Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0437000 |
| Transcript ID | LotjaGi2g1v0437000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LURP-one-like protein; TAIR: AT5G41590.1 LURP-one-like protein (DUF567); Swiss-Prot: sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17; TrEMBL-Plants: tr|A0A151R561|A0A151R561_CAJCA UPF0706 protein family; Found in the gene: LotjaGi2g1v0437000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93345197..93346342) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGATCTATAAAGTATGTTTTTATTAATTCTTTACAAACGCTGTCCCTGTTACTGTGAACATTATATAAACACCTCCC TCGAGCCAAAGAAAGAGTATCAAGGAACACAGAAATAAAATAAAAACAGAGGAAAACAAAAAAGAGTTAGCAGAGAGATA AAGAGATGAAGATGTTTTCCAAGTTCAAATCTCTTTCACGAACAGTCCATGAAGAGCAGGAGCAAGAGCCTATGGAGCAA ACTACATACCCCAGGATCAGAAACGAAGGAAAAAGCGTGTGCTGCACCACATCCCTAACCGTTTGGAGAAAATCCTTGTT AATCAGTTGCAATGGATTCACAGTTATTGATTCTAATGGAAATCTGGTTTATCGAGTTGATAACTACATGGGCCGCACTG ACCAAATCACTCTCATGGACGCCTCAGGAAAATCCATCCTCACCATGTGCCGCCGCAGGGTATATAATAATATCTTTATG CTTTTCATTTAATTAATACTACTACTTTTTGGACATATATTGATATAATATAATAGAGTGTGTTCATGGTGATAATTGTT TATGGTTGTCAATTGGCATATGCAGAAGCTTGGATTGTTAGTTAGCTGGTTTATGTATGAAGGTGAAATGGGGAACAAGA GTAGAAGGAGGTCCACGTCATCAGAATCTGAGAGTCCAATTTGCTGTGTGCGGAAGCATTTTAATATTCTAAAAGGCGGC AACGTTCAGGCGTGCGTGTACCGTACGGATAAACGGCGGTGTGCGGCGTTTGTGGTGGAGGGTTCATACGCGAACCGGAC ATGTAAGGTGATGGATGAAAGCAGAAGGGTTGTGGCTGAAATTAAGAGGAAGGAAGCTGATACCAAACATGTCTCCTTTG GGGTAGACATTTTTCAGTTGATTGTGTACCCTGATTTTGATCCAGGATTTGCCATGGCACTTGTTTTGCTCCTTGATCAA ATGTTTGAGTAACTGTGTTGTTCATGTGCTCTTCATACTTCATGTATTGTTAATATTTTTGGATGAAATGAAGTTAGTGT GTGCCTGCGAGATCAATTCTAATAGAGTATAATCAATTTTGGATGAAATATGAATGTTTAAATGTAATTTTAGAGAATTG ATTTATTTCTCAATTCTATTATGTTG
CDS sequence (LotjaGi2g1v0437000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGTTTTCCAAGTTCAAATCTCTTTCACGAACAGTCCATGAAGAGCAGGAGCAAGAGCCTATGGAGCAAACTAC ATACCCCAGGATCAGAAACGAAGGAAAAAGCGTGTGCTGCACCACATCCCTAACCGTTTGGAGAAAATCCTTGTTAATCA GTTGCAATGGATTCACAGTTATTGATTCTAATGGAAATCTGGTTTATCGAGTTGATAACTACATGGGCCGCACTGACCAA ATCACTCTCATGGACGCCTCAGGAAAATCCATCCTCACCATGTGCCGCCGCAGGAAGCTTGGATTGTTAGTTAGCTGGTT TATGTATGAAGGTGAAATGGGGAACAAGAGTAGAAGGAGGTCCACGTCATCAGAATCTGAGAGTCCAATTTGCTGTGTGC GGAAGCATTTTAATATTCTAAAAGGCGGCAACGTTCAGGCGTGCGTGTACCGTACGGATAAACGGCGGTGTGCGGCGTTT GTGGTGGAGGGTTCATACGCGAACCGGACATGTAAGGTGATGGATGAAAGCAGAAGGGTTGTGGCTGAAATTAAGAGGAA GGAAGCTGATACCAAACATGTCTCCTTTGGGGTAGACATTTTTCAGTTGATTGTGTACCCTGATTTTGATCCAGGATTTG CCATGGCACTTGTTTTGCTCCTTGATCAAATGTTTGAGTAA
Protein sequence (LotjaGi2g1v0437000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMFSKFKSLSRTVHEEQEQEPMEQTTYPRIRNEGKSVCCTTSLTVWRKSLLISCNGFTVIDSNGNLVYRVDNYMGRTDQ ITLMDASGKSILTMCRRRKLGLLVSWFMYEGEMGNKSRRRSTSSESESPICCVRKHFNILKGGNVQACVYRTDKRRCAAF VVEGSYANRTCKVMDESRRVVAEIKRKEADTKHVSFGVDIFQLIVYPDFDPGFAMALVLLLDQMFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 6 | 225 | 220 | 1.7E-91 | – | |
| PANTHER | 6 | 225 | 220 | 1.7E-91 | ||
| MobiDBLite | 9 | 23 | 15 | - | – | |
| Gene3D | 36 | 226 | 191 | 7.0E-49 | ||
| SUPERFAMILY | 41 | 225 | 185 | 1.46E-41 | ||
| Pfam | 42 | 219 | 178 | 5.3E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0437000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…