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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0445500 |
| Transcript ID | LotjaGi2g1v0445500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transport factor 2 (NTF2) family protein; TAIR: AT1G71480.1 Nuclear transport factor 2 (NTF2) family protein; Swiss-Prot: sp|P00947|SDIS_COMTE Steroid Delta-isomerase; TrEMBL-Plants: tr|A0A151SD15|A0A151SD15_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0445500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94060063..94062731) extracted from Lotus japonicus Gifu genome v1.2.
ATATTGATCCTCTTTCTTTAGAGGTTTTGGGCTTTTTGTTGGGCCTTTGGGGCTTGGATTTGGGCTTCATTTTTGTACAA GATTGAACGCTTGGGGTTGAAGAAAACGTTGTTGTTCATCATGTACCACTCATCATAATCATAGAGATTGGAAGCTAAAA TGTCAAGTGTGAGTTCCAGTTACAGTTACAGTTACAGTTACAGTGTGCGGTTTTGGACCTCAGATTCAGCTGCGAGTGCT TTATCACTGTCTTGTTCTTCACTCAGAGTTTCTCCTTCTGATTCTGGTGATGTCTCTTTTGTTGCTGTTCGGAAGCTTGA AGGAGGAGGAGGAAGAAGAAGACGGAATCGAACAAGTGTGAATACGAGTGGTGAGGAGCGGTCGGTGACAGTTGCATCAC CAGATTCCGCGAGTTTCGGTGATGATAAGGTTGTCGACTCAGCTGAATCTGTTGTGCGGAATTTCTATGGAGGAGTGAAT GTGCATGACGTGGATTCTGTGGAGTATCTTATTGCTGAGGATTGCGTGTATGAAGACCTTGTCTTTTCACAACCCTTTGT GGGTCGTAAGGTACAAGTTTAATGTTTAATTCACATCTATATAACTACCTAAAAGTGATTCTGGTCAATGAGAATTGATT TTAAGGCTCCTGAATCAAACACACACAATGAAACATTTGTGGGGTGAGAAGTTATTCCAACTCATTTGTAAGTCTAGTAC CAACTACCTATGTGTTTGGTTTAGAGTTGTCATGATTAATTGTGGATAAAATTGATTGGGTAAAGTTAATTATGGCAAAA GTGAGTTGAGAGGGAAGTAGTTCATGTTTGGATATAAACCGTCTAAGAGAATGGGCCAAAATTGATGTGAACTCTCATAA TTGATTATATCCTCCGGAAAAGCTAGATTTGTAACTTTATTCTGATCTTAAAGCTATTAATAAGCTGTGAAATGAAGTCC AAACACCCAAAATTGATTCTGCTAGTGGAACTAGACATGCTATACCCTGAATTGTCTGTCTTTTATACCGTACTTTTATT TTCTCTTGGTGAGGGGTAGGGGAGGGAGTGCTAAGCACTAACTTACTGCTCTACAACTATAATGTTATCAACTAGATTCA ATTGTTTCTATGATTTCATAAGGTTACTTTGTTATTTAAGTATAACTATGAGGCATGATCATCATTGTCCTATTTCAAGG AGTTAGTTTTTGCTTTAATTATTGTTTCAGGAAATTATAGAGTTCTTCAGAAAGTTCACTAAGTCTACCAGCACGGATCT GCAGTTTGTTATAGATGATTTGTCCACCAAGGACTCCTCATCAGTTGGGGTGATATGGCATTTAGGTGCATAACAAGTTA TAATGTTCTTTATCTCCCTTATACACGGGTTCTGATATGATTTATATTTATTTTATTACTTTCTAAAATATTACTAATAT TTGGGAATGGCTACAGAGTGGAAGGGCAAGCCTTTTCCCTTTAGCAAAGGATGCAGTTTTTATCGTTTGGAGGTGATAGA TGGCAAGAGACAAATAACGTAAGTGATACTGTATCATTTGCATTAACTTGTTGAAGCTGGAGCATTTGAAGTTTCGCAAT TTACATTTATTCCCTGACCCCTATTCTGCATCGCTTGTTGTATTGTTTAAGTAGCTAGTTTGACACACTTAGTGAAAGGG GCATGTTTATTGTGTTTTAAAAGTGTTGTTGGATGAACTCTTCACATCTCAGTGCAAATAGCCTGCAAGATTTTCAATGG GATTCTTGTTTAGATGATGGTTTTATGATTGTTTTTTTTTATCTGATAACAGATATGGGCGAGACTGTGTTGAACCTGCA ATCAAGCCTGGGGATGCAACTTTGGTATGAGTCAGTTCTGGCTTAGCTTTCATATTGGTCGTCATTTAACACAATGACTC AGTGTAGAGTGGAGAAGATCTAGAACATACAGATCCTGAAGAAATACTTAAATATTGTTTCCTCATTCTTTAACTGAGTT TGATTATCTTGGCTAACAACGTAACAATCTATATGCAGGCTGTGATAAGAAGTGTGACATGGATTCTGCAGCAGTTTCCT CAGCTGGCAGACAGGCTATAGTGATAAGTCTGCATTGTTTTCTCCTTCACAGGATTAGTATGCTGATTTGATTGAAATTG GGTTGTGTAACATAAACTTCCCCAGCGCAGAAAAGGTGAAAGGGCTGTAAATAAAAAAGGAAAAAAGATAAATTACAATG TAAATGTTGTTAAATTTGCTAAATTTGTAAACATATGTTTATAATGTAAAAGTTCTTAACATAATCTTTGTATTTTTTTA AGGTTCTTTTAGTATCTGTATTCTGTAATTTAATTAATTTTTAGCCAGGTTCCTACTTTCCTGAAAATATATAATTAGAT TCGTTAATATGTGATAGCTCTGACACAGTAAGGTTGAGTTTTTGGCCATTCTACAAGGGCTAAAGAGCTGTAGGAGGAAT GCTGGATTTATGGGAATGAAGCCTCTCTCATTTCATCTTGGTCTTAAATCTTGTGCAGAAGCCTATTCCTGCTATCTTAA TGCTCCTATCCTGAAAGCTTTTAGTAGACTATTGTTGTAATAATTACTTAAGTAGTAATAATTACATAGTGTTCCAAAAT GACAAGTGTGTTGATTTGCATTGAATGGA
CDS sequence (LotjaGi2g1v0445500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGTGTGAGTTCCAGTTACAGTTACAGTTACAGTTACAGTGTGCGGTTTTGGACCTCAGATTCAGCTGCGAGTGC TTTATCACTGTCTTGTTCTTCACTCAGAGTTTCTCCTTCTGATTCTGGTGATGTCTCTTTTGTTGCTGTTCGGAAGCTTG AAGGAGGAGGAGGAAGAAGAAGACGGAATCGAACAAGTGTGAATACGAGTGGTGAGGAGCGGTCGGTGACAGTTGCATCA CCAGATTCCGCGAGTTTCGGTGATGATAAGGTTGTCGACTCAGCTGAATCTGTTGTGCGGAATTTCTATGGAGGAGTGAA TGTGCATGACGTGGATTCTGTGGAGTATCTTATTGCTGAGGATTGCGTGTATGAAGACCTTGTCTTTTCACAACCCTTTG TGGGTCGTAAGGAAATTATAGAGTTCTTCAGAAAGTTCACTAAGTCTACCAGCACGGATCTGCAGTTTGTTATAGATGAT TTGTCCACCAAGGACTCCTCATCAGTTGGGGTGATATGGCATTTAGAGTGGAAGGGCAAGCCTTTTCCCTTTAGCAAAGG ATGCAGTTTTTATCGTTTGGAGGTGATAGATGGCAAGAGACAAATAACATATGGGCGAGACTGTGTTGAACCTGCAATCA AGCCTGGGGATGCAACTTTGGCTGTGATAAGAAGTGTGACATGGATTCTGCAGCAGTTTCCTCAGCTGGCAGACAGGCTA TAG
Protein sequence (LotjaGi2g1v0445500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSVSSSYSYSYSYSVRFWTSDSAASALSLSCSSLRVSPSDSGDVSFVAVRKLEGGGGRRRRNRTSVNTSGEERSVTVAS PDSASFGDDKVVDSAESVVRNFYGGVNVHDVDSVEYLIAEDCVYEDLVFSQPFVGRKEIIEFFRKFTKSTSTDLQFVIDD LSTKDSSSVGVIWHLEWKGKPFPFSKGCSFYRLEVIDGKRQITYGRDCVEPAIKPGDATLAVIRSVTWILQQFPQLADRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 57 | 79 | 23 | - | – | |
| PANTHER | 59 | 240 | 182 | 1.2E-85 | – | |
| PANTHER | 59 | 240 | 182 | 1.2E-85 | – | |
| Gene3D | 76 | 207 | 132 | 2.0E-21 | – | |
| Pfam | 95 | 213 | 119 | 8.5E-15 | ||
| SUPERFAMILY | 96 | 209 | 114 | 1.8E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0445500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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