Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0451000 |
| Transcript ID | LotjaGi2g1v0451000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAP annotation release 2, NERD domain protein; TAIR: AT1G65020.1 plasma protein; Swiss-Prot: sp|P24612|MEC4_CAEEL Degenerin mec-4; TrEMBL-Plants: tr|I3SQD7|I3SQD7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0451000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94431472..94435613) extracted from Lotus japonicus Gifu genome v1.2.
CCCGACTCTAATAAAATGACCTGACTCGAATAAGATTGTGTTAATGAAGAGAGTCACGAAATAAAATAGGGTTATGTTAA ATGGAGGGGTAGTTCCTAGTCCCTACTTTACTATTTGCATTGCAAAGAACCTTAATGGTTAAGGCTTAAGAATAACATAA CCAAGTTAGCTAGATTCTCCACAATTCAATACCCTGATTTTGACTAGAGTGAGGAAGCAGAACAGAACCAGAGAAAAACA ACACAAGTGAAATTTTCATTCATGTTTGCAGAGAGCAAAGAGATGTGGGCAGCGATAATCTGCGGTTTGGTGATCTACAA ATTGTTCAGACGCTTCATGTACGATGATGACATTCTTGACATTGAAGGATCTGATTCTTCAGCTCTATTCTCCGTCGCTG ATAGGTTCAATTTCTCACCCCTCTTCTCTCTTTAGGGCACACAATTTCCCTTACAGTTTATCATTTTTGCAGGCTTAAGA AGCTTTACGGAGGAAAGGTGCATGTGGGTCTTCGAATTCCTGATGCTGATTCTGCTTCTCGACAGACCATTGATATAGTT CTCGTCACCAAACAGTATCAATTTTCACCCTCTTAATCTCTCTTCAATTGATAATTAATCAAAATTTTGTTTCAATTTTT TGTATTTTTTTTGAGTTTCAATTTAATGTTGCAGAGAGCTAGCAGTGATTTCTGTGAAGAATTTCTCAGGAATTTTGGCA GTTCATCGTGATGGTAGTTGGGTCTCTGAAAAGCCAGGCAAGCATAAACAAGAGACTCACCCTGATCCTGTAAGGAACCT GCTTGAGTTTCTTTGTTCTTATAAATGCAGAATACTAGCTGTTTTTCTTTTTCTTTTTCTTTTGGCTAAATGTTGTTTTG TAAGATGGCATTGATTAGAATTTAGACACTAATTTCGAATTTTTATCATGTAGTATGTATGGACATAGATTTGGATTTTC ATTCTGTTCAAGTTTTGTAATTGAGGATGCATTAAATGTGGAAGAACATGGGAATAAGTAATTTTCTGAATTAGTTGTTT TCTCGACTTTTATACAGGTGGAAGAAGCTAGGAAGCAAGTTTCTATCCTTGAATCGTATCTCAAACAAAGAGGGGTCGAT TTACCTAAAGGATACATATCCTATAAAGTTATACTTCCAAATCCTAAATTATGGTATGATTTTGAATCTTCTGGTTATAT TATTACTGGCTGTAAATAGGGTCACCTGTGTCAGTTTCTATGCTTCTCTCTTTTGATTCATGATTTCAAATTTGCCAAAT CCGGCTTCGTTGGTTGACCTATAAAATAGCCATTCTTCTCATTATATGTTTCATGCATTCTATATGAAGAAATGAAATAC TGTGCAATATCTAGTTAAAGTTATGCATAAGTTGGGAGTGTGTTGACAAGATTGTAAGTGTTAGTTTAATGATCACTTGA CTAGAAGGATTTATGACAGGAAGAAACATATATGCTTATCTAGTTTTACTCTAGTTAAAAGGTACTGATAATTTGTTTTT CTTTTTCAACTGTTTTCTAATGTATGTTAAAGTTCATCTCTTTATTTGTATTTGCAGTACCCTTCCTGCAAGTGATTTTC CACCTGAAGTTATCACCCATGAACAATGGGTTCAACTTAAGCCAGGGCATAAGAGTATGTTTTCTAGTTGGGTAAAGAGT GCCTTTGGTGCTGGGAAGAAGGATATGCAAGAATCTACTCAGAATCTTGATTTTGTACTCAGCACAGCTCCAATATGGGA TAGGTTAGTTAACTTTTATACTTGACACGTTTCTTGTATTTTTTTTTTCTATTAGTAAAATTTCCTGCAACTCAATTCTG CTAATGGGGCCTTGTCAAAACTTTGGCTTAGGGAAGTAAATCTGTCAATCCATTTGTTAGCTATTTGATGTTAGCTTGCT AAAAGTTTGGTTTGACTTTGCTTGATTTCTGTCAAAACCAATTCAACCTCAAAGCAGCAGGTGAAGGCACAATGGTGGGT TTTTATGTGTGACAGAATAACACACCTACTCAACAAGGGCGTAGTGCTCCACCTACTCAAATATTAGATACTTTCTTATT GAATAAAAACTCGTCATATAACTATCAGAACTGCCTCAAATGTTTGCACTGAATTATTTCCAGACATCCTAATGAATTAT TTCCATTCTAAGTTTGAATATGATATTCTTAAATAAAATAAAATGCCATAAGTAGAAAATAAAAATATCTAATCTCAAAC TGGAAACCTTAATTATGGAATTAAAAGTAAATGACAAAACTGGCTGTAATGATTTTTGGTACAACTTTAAAATACATGAA AGGTAACGAAAAATGTGTGGCTTCCTCTCTTAAAAACTAACCCCAAGTGTATGGTTATTAATTTTATCGTGTGGCTTTTA TCAGAAACATGATGGGCTCTTCTTAAATTTCATAACTCTTCGTGTGAATTATTTCTTCCTACTAAGCACTGAGGCTTATC AGGAGAGCACCCTGTTGAAAGGAAGGAACACTCTTTGCTTCTGTTCTGCATCTGAATCAAGAACAAATCTTTAGTACTTT GGGAGGACTGAGAATTCAGTACTCCTTCACAAAAGTAGTTCTAGTTTACAGTTCTTCTATTTTTCCATTTTCTTTTTAAA AAAAAAATCAGGGAAAACTAACCATATATAAACATACTGCAGGAAAACTATAAATTTTTCAGTGAATCAGATTCTGCAAT TCTGATAAAAGACTTTTTAATATTTTAATTACAAATGAGATGTGCATGCCTTCAGATTTGTGTACTTTTGGAGCTTTGTT AGCATCATTTAATATTACTGTGTCATGAATATTCCCTAACAAAACAGATTGTTTGGCTTGCAGGCTGGAACTGAAAGGCA GCAAGTATGTATTGGGAGAGTTCCTTGAGTTTAAGGGAAAGCAAGAAGATATTGAGGCTTTAAGCTATATTAGAAGATCA AAAGTCGGTCGTGTGACAATCCAAAAGACAAGCATGTTTGGACTAGGTAATCTTCTGGGAAGAAATGATGCTTTTGCATT CTAGTTGTATTCAACAGAAATTCATAATACATATTACTCATGGTTATTACTTCAAATATTTTACTTACTTACAATTCCCT TGTTGTCACTTACTATTTATTAAAATCTTGATACATATTTCTTGCTGTTTCTAAATTAATCCATCTATAGCTTGAGTTTA CATCTAGTTGATATATCGTATAATTACCAGTGGTATAAATCTAGTGTACTGATAACCTGTCTGTGATGAAGGGGAAAACA TCAAGAAATGAAGCTTTTTTGTTGTTGCATTGTTATGTTTTGTGGTTTCTTTTTTTTTTGAATTAACTTGGGGACGATTT GTTTGCAGCTCCTTCCAGGCTTCAAGTCTTATACTCCTTGCGTGATTATAGAACTGAAGGATCATCAACACCACCAGAAT TGAATGAAGTAAATGTAAGATCAAGCACTGAGATCGTTTTTCAGCCAGAAAATGCTTCTAAAGTCAGAAAGTTTAAGCTT TCTTCAGTGACCTCCATGCTTCTTAGCGCATGAAGTTTTACTCAAACTAAGATATCAAATTTCTGTTTGCTCGACATAGA AGCTACTCCTGCCAGCTCTCGTTATGCATATATATTAATATACAGTTTTGTATACACATGTGAGATTCATATTTAGGCTT TAGACATCATATATAACATGTGCTTCTAAAAATTTGATTATTTTGCAAGAAAAATTATCTGAGATAAAGCATTGCATTGA ATTGAAAACAGAGGAACCTAAACCTTCTATGGAGTAGTGCTTGGGTGCGCCATAAGTGTGCTCCTAATAATAATAGTAGT AGCAGTAGCAGCCGTGGTAGTAGCATAAACCGAAACAGAACAAGTGGTAGAAATAATAATAATAATAGTAATAGCAAATT TTTTTAGTTTTATTTTCAGAAACTATTCAATCTATTTGCCTTCTTTGTAGGGTCCAAATGAAAAGAAGTAGTCTTACCTA ACCGGTAACAAAAACACTTGACTTTGTATCAAAAGATAGACTATGAATAAGTTATTGAAAGAAGAACACACTAACTTCAC TTTTTGAGTAAATTATACCATTTGATTTTCGTTGTTGCTTATTTATTGTCAAGCTAGGTGGA
CDS sequence (LotjaGi2g1v0451000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGCAGAGAGCAAAGAGATGTGGGCAGCGATAATCTGCGGTTTGGTGATCTACAAATTGTTCAGACGCTTCATGTA CGATGATGACATTCTTGACATTGAAGGATCTGATTCTTCAGCTCTATTCTCCGTCGCTGATAGGCTTAAGAAGCTTTACG GAGGAAAGGTGCATGTGGGTCTTCGAATTCCTGATGCTGATTCTGCTTCTCGACAGACCATTGATATAGTTCTCGTCACC AAACAAGAGCTAGCAGTGATTTCTGTGAAGAATTTCTCAGGAATTTTGGCAGTTCATCGTGATGGTAGTTGGGTCTCTGA AAAGCCAGGCAAGCATAAACAAGAGACTCACCCTGATCCTGTGGAAGAAGCTAGGAAGCAAGTTTCTATCCTTGAATCGT ATCTCAAACAAAGAGGGGTCGATTTACCTAAAGGATACATATCCTATAAAGTTATACTTCCAAATCCTAAATTATGTACC CTTCCTGCAAGTGATTTTCCACCTGAAGTTATCACCCATGAACAATGGGTTCAACTTAAGCCAGGGCATAAGAGTATGTT TTCTAGTTGGGTAAAGAGTGCCTTTGGTGCTGGGAAGAAGGATATGCAAGAATCTACTCAGAATCTTGATTTTGTACTCA GCACAGCTCCAATATGGGATAGGCTGGAACTGAAAGGCAGCAAGTATGTATTGGGAGAGTTCCTTGAGTTTAAGGGAAAG CAAGAAGATATTGAGGCTTTAAGCTATATTAGAAGATCAAAAGTCGGTCGTGTGACAATCCAAAAGACAAGCATGTTTGG ACTAGCTCCTTCCAGGCTTCAAGTCTTATACTCCTTGCGTGATTATAGAACTGAAGGATCATCAACACCACCAGAATTGA ATGAAGTAAATGTAAGATCAAGCACTGAGATCGTTTTTCAGCCAGAAAATGCTTCTAAAGTCAGAAAGTTTAAGCTTTCT TCAGTGACCTCCATGCTTCTTAGCGCATGA
Protein sequence (LotjaGi2g1v0451000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFAESKEMWAAIICGLVIYKLFRRFMYDDDILDIEGSDSSALFSVADRLKKLYGGKVHVGLRIPDADSASRQTIDIVLVT KQELAVISVKNFSGILAVHRDGSWVSEKPGKHKQETHPDPVEEARKQVSILESYLKQRGVDLPKGYISYKVILPNPKLCT LPASDFPPEVITHEQWVQLKPGHKSMFSSWVKSAFGAGKKDMQESTQNLDFVLSTAPIWDRLELKGSKYVLGEFLEFKGK QEDIEALSYIRRSKVGRVTIQKTSMFGLAPSRLQVLYSLRDYRTEGSSTPPELNEVNVRSSTEIVFQPENASKVRKFKLS SVTSMLLSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 329 | 322 | 8.8E-128 | – | |
| ProSiteProfiles | 37 | 154 | 118 | 17.71 | ||
| Pfam | 44 | 139 | 96 | 7.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0451000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…