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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0462300 |
| Transcript ID | LotjaGi2g1v0462300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Laminin-like protein epi-1; TAIR: AT5G25070.1 neurofilament light protein; Swiss-Prot: sp|Q8CDM4|CCD73_MOUSE Coiled-coil domain-containing protein 73; TrEMBL-Plants: tr|A0A0B2PWK8|A0A0B2PWK8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0462300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95571068..95577598) extracted from Lotus japonicus Gifu genome v1.2.
ATACCATTTTTATCTAACCAGTTGGGTAAAAGGATATAAAGGGGATTTTAGTTGCTAGCACAGATCGGGGGTGAGGACGA CGAACATGGCTGATGGGAAGGAAGGTGAAGATATGGATTCGCTATTTGAAGGGATGGTACTGTTTAACCCCACTGAAATA GAAGCAGAGCGCCGACCAGACAATCATAGTGAAGATGATTCTCTTCAATCCCGTCAAAGTGATGCGATCACAACTTCAGC CGTACCAGCATCGTGTTCATCGCAGCCCCTTGACGAGAATCTCTTCTCGGACCTCACGCTTGTCGTGGATCCCCTCCAAA ACTTAGAAGTGGCTGAAACCGAGCATGATCTCCAATCTCCTCAATCATGCATCAAGCCGCCATCAATTATCTCGAGACAG GGCTCCAGACGGAGAAAACGATCTGGCTTGAGGATAGGATATGGTAGAGACAACAATCTATCTGACTCTCCTTCTGCGCT TCTCCAACCCACTTTTACAATTTCTGATTCTATAAACTACGACACTGTTGGAGAAACTCCCTCGATCACCACTGATGTTG CTGTACCTGTTACCCAGCCATTCAGTGAATCTTCCAACTCGGAGAATGAGAATGTGATACACGCAGAGGCAGAGGGTGGT GAAACTTTTTCTGAGGCAGATTTTCGGCAAATTAAGGCCACCATAAATGATAAGCTTAACCTTGCCCGCCAACTGGTAAA CTCTGCTTCTGCTGCCCGAAAGGATTCGATCAGGAATAGAAGAAAAGCCGTTGAGAATGTTAGTCTTGCTTCTCTCAAAT ACATGGAGCTCGAAAAGCAATTGGAAGAAGCCTGCGATGCTGAAGATTTTGAAGGGCTGAACAGGTTACCGAAAGCTGCC GAGAAAGAGAAACAAGCTTTCACGAATTCACTAAGAGATGCGGATGCCTTCATCGACGCATTGGAATTAAAATTGCAGCA TGCCCTCGATTCTTACATAGCTGCCGAGGAAGAATGTGCAATCTTACTCGACCATTATGCAACGGTTAGTGATAATAACA AAGAACCAATAAAGTTGGCTTTCACATTATTCATATTTAATCGGCCTTTCCCAGCTTACTCTTATCTTCTGTTTTCTAAG AATTGTATATCCACTTTATCTGTTCTCTTCCATGACATCGTTTTTAAGCTCAGATAGAATTTTGACTAGGCGTGAGTGAA ATATGACTGTCTAGTTTGCAGAATTTGTATTTCCTTTTAACTTCACATAAATCCATCTATAAAATGAATGTGATACATTC TAGACGATCATTTTCCAAGTTAAACAAAAGTTCTTACTGCCAAGTGTTCTGGCAGCTTGCTGGTGTGACTAATTCCAATA TTTAAACCAATGCAATTTAAGAAGGTTGATTACTCATAAAATGCCCTTAAACCCAAAACTGACTGTGGCCATATTTGAAT GAGATGGAGATTGATATTTGTATCTTCTTTTAGAAAAGAACCCGTGAACTTACATACAGTAGCATGACCTAAATTCAACC ATTTGTTTTAATTGTTTGAACATGGTTAACGCTTCTGATTTTGTTTTCAAAAGATAAATCCAGGTGAACCTAGAGTGTGA GTCAACAAATGTGATATAATAGTGAAGACCATTAGAAGAAGTAACAAGGGCAGGACCCCACAGGAGAAGAGATTCAACTT CCTCCGTATCGAGAGGATCAAAACGACTCTATACTCCGATACTTGTAGTCACAAGACACAACATCACTTACCCCCAATAA CAGATCTGGCACCTGCACGTTGTGGTCTCGACCACGGCCTCTGCCACCGCGATCACCAAACTAACCACCATAACCACTGC GAGGACAAAAATCACCTCCTCCACATCCAAAAGCTCCAGAAACAAAATTCGCTTGTGTAGATGCAGCACATTATGCTTTT TTTTTTTTTTTTTGCAAATTGGAGTTTGTAGGAGCTTGACAAGTGTCAAAACAAAAGCATCTCCAATCTGCTGCTTCTTT GTGCACTCAATTATGGCTTTATGAGCAATTATCATTGCTTCAAATTCTGGAATTGAACATGGAGAAGTACAATTGTGAAC AACAGTCATCAATGAGCTGAGTTCTTGTGGATGTCCTTCGAAAATCGCTTCAAGATGATCTCTGTGACTTACTTGATCTC CCACTGAAATCAAAGTGTTGATAATTGTCTTAATTCTTTTGAGATAATCAAAATTAGATCTCAAGCCTTTGGTAATGGTC CTAATTTCAGATCTAGGCTATGTGGACTGAGCTTGAGATTGAGCTTAGAAGAAGTTGTGAATCTCCTCCTAAACTTGCCA AGAGTGAATACAGTTGATTACTTTTGGACGAAAAGAAGTGAAAAGTGAAGTAAGTAACCAAGTAAAGAGCAGAAAATGTT GCTGCTCCTAATCTAGGTATGCTGGATTCACCGAATCATTGTCGCTATCTTCTTTAGTGAAAAATCAAAGAGGAATATCA GGATTCTACTTGTGCAATTCGTGAACTCTGATTACACCTTCTACTTGCTGGCCCCATGAAAGAAAGATTGATTCATCAAG CTTTATGTTGATCGAATGAGAAAAAGTGATAAGAGCATTTGATGATGTTTTGTTATCAGAAGAAGAAAAATAATTGCTAA AAGAAGCCATGGAACAAAGACTGAACCTTGCTCTAATGCCATATTGAGAAGAAGAGGAACAAGGTTAAGATAGAATCAGT GGGAGGAAACCGAGTATGGAAAGAACCTATGATATTTGATTTGATTAAACCACTGAGATATACAAGAGAAGCTCCTGAAA ACTAAAACTTCCATTAGAAGCTTACAACGTAATATCATTTAGCATAACAATAACTAACTGTAACATAATCTAAAACAGAA AACTAAATACAACAAACCAAGGATGTTAAACTTGATAGTTTACGTTTTTTTTTATAAACACTTGAGAGTTTACGTAAACT TGTCTCGTAAACTTACGAGTTTACCTCATGCAAAAATAATATTTAAAAAACCAAAACATTGATGCAAGCACCAATAACAG AGATGAATGCTCTGTTCTAACAGAATTGTAATTTGTCATTTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTTCTG CTTTTTGAACAGGGTTCTATGGTCAGTCCGCAACCCCTGGATGGATGCCGAAGGCGTTCTTGGGGTAATCCCGATCCAGC AGAACAACTCATGATGGTGTGCCATATCAGTTAGCCATAAACTTTGCGTTTGTGGATAAATTGGCAGTTTTTGATCCTTT TGATCTCGTTCTTGACCCAATGTGCTGCTGAAACTACGCGAAACTATCACAAGGGCTTATGTACAAAGAAGGGAAACTCT CCATCATCTTTCTTTGGCTGAGTGGCATGTATTTCCACGGTGGTCTGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTG ACTCTACCGGGACTAACCAGTAAAAGGTCTACAGTCGGAAGAACTTTGAAATCATAATTTCCTTCAGATTGAGCCGACAT CCGTTGCGGTGCAAATTTCTTTTCTGTCGATACGGAAACAGATTCATTTTGCAAGTTCGTTATTACAAGCCATTGACTAT TTCTTGAAGCTCGATCTCTCCCCCGGATGCCATCGAAAATCGATTTTACGGTATAGACCTAGGGCAAATACTGACCTCAG TGGAAAGGATAATTCATTCGGATCGCTTGCCCGACCGCCTTTATACTACGTTCATAGTATAAACAGTTTTTAACTGACTT TCTAGTTGTCTATAACAGGCTCTGACTAACCCTAACAGTTGGCTGTAACAGTTCCATTGCAATTATAGCACATGCAGAAA CACCTTAACAAAAACTTAGACTGATCTAACAATAACAATTAGCTGTAACAGCTTTATAACAATTGTAACACATACAGAAA CACACCTTAACTGAACAGAGACTGCACATCTGGGCAGTACACTCTAACACTCCATAGTCCAATGATCATTGAAATCTGTA ATGTTAGAATAATTTAAGCAGTTCCTTTATGTATTTTAGTTCCGCTACTTGTAATTTCATTATCTGATGACCTGTTAATA CTAGTATGTGCATGATAGATAATCTTCCAATGCTCTGAGGAAGATTGTGCTCATACTGTTAAGTGACGTCCAACACTGTA ATTTTATTTGTATAATTTTGCATCTCCTTGTTGGCTCTTTTCTTTAGGCTGCTCATTCGACTTATAGTTATAATTTCTAA CATGTCTATATTCTTTTTTCTAGAATGCTTTAAATAATTCGGATTCTTCCTTGAAGAAAGCAACATCATTGCATTCAAAA GAAATGGACCAGTGGCTTTCATCATCTGAAGCCTTGGAGGTTAAAAAGACGGAGTTGGAGATTGAATCACATTTTATAAG TGAAGCTCATTTAGAATTGGATAATACTATTAAGCACTCAATCAAGGATAACAAGAGAGAAAAAGAGATCCTTTGTAAAA GAAAGAATATGCTAATTGGTGAATTGGAAAAACTTCTTGTTTTAGTAAAACAGAAAGAAAAGGAGATAGCAGACAATGAC ACTAATTTAAAAGCTGTAGAGGATAAGATAAATAATGTTGTCTCTGGATTTCAAGAGGTTCAGTCAAATGTTAATGTGAA GTATGACGAATTGCAATCTCTACTTGCTCAAGTGAGATTAGAGATTGAAACTTTGGCACTGAAGAAGGAGGAAATTGACA ACTTTCTCACAAAGGAAGAAGAAATGGGAGCAAAACTTAGGGAAATTGCTAGGATTTCTGAGGAGGAAGGTAAAGGATAC CGGGAAATTGTTAAACTACGAAGAAGTTTGATGTTATCTATAGTGAAGTCTAGGGAGGACAAACTAACACTTGCAAACAA TGAGGAAAAGCTTTCCGGAGACGTGAATTTGTGTCAACTGGAGGTTTCTGCAGCAAGAGCTTCCTTGCAGGTTAATTCTT AAACTGGTTTTTTATGTGTTCTGAATTATGTAAATGGCTGAAATGTGATGAATAATCACAAGGAGACCTTTCATCATGCT AGGTACCTGTGCACCACCTAGTAATAAAAATTTGAAATTATACACAAGATCTGAATATACTTTAGGTTGAGACTGCTATA AAATGGCACCGCATCTATCAAATCCATGATATCTTATTTTTATGTTGTTTATTTAAAACAAAACAAGGTCTATTGACATT TCTTTTTCCACTGAAAGATTTGTTGTTACTTGTTCACAAATGTCATTACACTGTTTTCAGGAGCTATCTTCAAGAAAGTC AAGCATCCAGCAAGATATAGCATCCAGCAAGCAGAGGATTATTTTCATAGATAAGAGAGTCCCAGAACTTGAAGCAGAAA AGAAAGTTGCTACTGCAGCAAGAAATTTCAAGGATGCTGCACGAATAGCTGCTGAAGCTAAGTCACTCTGTGTTGAAAAA GAGGGCATGCAGATAGACATGGACACCGCCACTTTAAATCTTGAGAAGCTTGAGGAAGAAATCAAAGACACCCTTAATAA ATTGCAGGAGACCGAGGGAATGATCTTAGTGAAGGAAAAAGAGTTGGCAATGGCTAGATATCAGAGGCTACTTCTGACAG CTGCTATGGCTAGAGCTGAAAAAGTTGCCGCACTAGAAATGGGTGATGTGGAAGAAGCTAATCTCCTGCTTGCAGAAGCT GAGGCAGCAGACTGTGAAGCTGAGAAACTTCAATCAACATATAGTTTCAAGGCGGAAGACCTCACAAATGTATGGAAACA TTTAATTTCAATGGATCTTGTATCGCATGTTGATCAGAAGCAATTGCAAGAATTGGCAGTCACACTTAATCTATATACTG AGTGATTCGAAACAAGATTTTTGTGGATTTAGTGATAATTGGTACAGGTGCTGTTGCGAATTGGAGAGGGGGAACGTGAG TTTTGGGATATTCCGACATTTTGGAACCGTGGGAATCGACCTTGGCTTCGAGCAGGAAGTTGGCATTGACTAGTTACTCG TGTTCTTCCTATTTTCTTTATCTGATGTAAAAGTTCCATTTGTGTACTTCTGCTGTATTGAGTATGAAACCGTAATCCTG TAAGTTAGCAGTAAAATACGTGTATTCTTGGTGTGTTCTTTTCTGGTCTAACGTTGCATTTAACTATGAGGAATGAGGAT ATTGATTTGCTGTGACGATTCTGTTTATTGTCAGGGGTAGATCCATGATTCCACGTTGAGATCATTATTTCAAGGTTTGA TTTATTCACACATTTTTTTCTCTTCCATCTCATTTTCATCCACTATCTCTGTTTATCTCTCTTATTTTTCTATTGCATCA CTCATCATATCCCTCAATTTTCTCTCTTTTGTTCCATCTTTTTTTTTATAAATACTATTTCATCTTATTTTCACTCACTA TCTCTTTTACCTCTCTTATTTCGTATCACTCGCTCCTCACATCCTCAAATTTTTCTCTTATATTCTTATCTCTCTAGTGG GCGTGGATGGAATGGATGTGAATATATATTGTTCCTAAATTTCATTTAAAC
CDS sequence (LotjaGi2g1v0462300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGGGAAGGAAGGTGAAGATATGGATTCGCTATTTGAAGGGATGGTACTGTTTAACCCCACTGAAATAGAAGC AGAGCGCCGACCAGACAATCATAGTGAAGATGATTCTCTTCAATCCCGTCAAAGTGATGCGATCACAACTTCAGCCGTAC CAGCATCGTGTTCATCGCAGCCCCTTGACGAGAATCTCTTCTCGGACCTCACGCTTGTCGTGGATCCCCTCCAAAACTTA GAAGTGGCTGAAACCGAGCATGATCTCCAATCTCCTCAATCATGCATCAAGCCGCCATCAATTATCTCGAGACAGGGCTC CAGACGGAGAAAACGATCTGGCTTGAGGATAGGATATGGTAGAGACAACAATCTATCTGACTCTCCTTCTGCGCTTCTCC AACCCACTTTTACAATTTCTGATTCTATAAACTACGACACTGTTGGAGAAACTCCCTCGATCACCACTGATGTTGCTGTA CCTGTTACCCAGCCATTCAGTGAATCTTCCAACTCGGAGAATGAGAATGTGATACACGCAGAGGCAGAGGGTGGTGAAAC TTTTTCTGAGGCAGATTTTCGGCAAATTAAGGCCACCATAAATGATAAGCTTAACCTTGCCCGCCAACTGGTAAACTCTG CTTCTGCTGCCCGAAAGGATTCGATCAGGAATAGAAGAAAAGCCGTTGAGAATGTTAGTCTTGCTTCTCTCAAATACATG GAGCTCGAAAAGCAATTGGAAGAAGCCTGCGATGCTGAAGATTTTGAAGGGCTGAACAGGTTACCGAAAGCTGCCGAGAA AGAGAAACAAGCTTTCACGAATTCACTAAGAGATGCGGATGCCTTCATCGACGCATTGGAATTAAAATTGCAGCATGCCC TCGATTCTTACATAGCTGCCGAGGAAGAATGTGCAATCTTACTCGACCATTATGCAACGAATGCTTTAAATAATTCGGAT TCTTCCTTGAAGAAAGCAACATCATTGCATTCAAAAGAAATGGACCAGTGGCTTTCATCATCTGAAGCCTTGGAGGTTAA AAAGACGGAGTTGGAGATTGAATCACATTTTATAAGTGAAGCTCATTTAGAATTGGATAATACTATTAAGCACTCAATCA AGGATAACAAGAGAGAAAAAGAGATCCTTTGTAAAAGAAAGAATATGCTAATTGGTGAATTGGAAAAACTTCTTGTTTTA GTAAAACAGAAAGAAAAGGAGATAGCAGACAATGACACTAATTTAAAAGCTGTAGAGGATAAGATAAATAATGTTGTCTC TGGATTTCAAGAGGTTCAGTCAAATGTTAATGTGAAGTATGACGAATTGCAATCTCTACTTGCTCAAGTGAGATTAGAGA TTGAAACTTTGGCACTGAAGAAGGAGGAAATTGACAACTTTCTCACAAAGGAAGAAGAAATGGGAGCAAAACTTAGGGAA ATTGCTAGGATTTCTGAGGAGGAAGGTAAAGGATACCGGGAAATTGTTAAACTACGAAGAAGTTTGATGTTATCTATAGT GAAGTCTAGGGAGGACAAACTAACACTTGCAAACAATGAGGAAAAGCTTTCCGGAGACGTGAATTTGTGTCAACTGGAGG TTTCTGCAGCAAGAGCTTCCTTGCAGGAGCTATCTTCAAGAAAGTCAAGCATCCAGCAAGATATAGCATCCAGCAAGCAG AGGATTATTTTCATAGATAAGAGAGTCCCAGAACTTGAAGCAGAAAAGAAAGTTGCTACTGCAGCAAGAAATTTCAAGGA TGCTGCACGAATAGCTGCTGAAGCTAAGTCACTCTGTGTTGAAAAAGAGGGCATGCAGATAGACATGGACACCGCCACTT TAAATCTTGAGAAGCTTGAGGAAGAAATCAAAGACACCCTTAATAAATTGCAGGAGACCGAGGGAATGATCTTAGTGAAG GAAAAAGAGTTGGCAATGGCTAGATATCAGAGGCTACTTCTGACAGCTGCTATGGCTAGAGCTGAAAAAGTTGCCGCACT AGAAATGGGTGATGTGGAAGAAGCTAATCTCCTGCTTGCAGAAGCTGAGGCAGCAGACTGTGAAGCTGAGAAACTTCAAT CAACATATAGTTTCAAGGCGGAAGACCTCACAAATGTATGGAAACATTTAATTTCAATGGATCTTGTATCGCATGTTGAT CAGAAGCAATTGCAAGAATTGGCAGTCACACTTAATCTATATACTGAGTGA
Protein sequence (LotjaGi2g1v0462300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADGKEGEDMDSLFEGMVLFNPTEIEAERRPDNHSEDDSLQSRQSDAITTSAVPASCSSQPLDENLFSDLTLVVDPLQNL EVAETEHDLQSPQSCIKPPSIISRQGSRRRKRSGLRIGYGRDNNLSDSPSALLQPTFTISDSINYDTVGETPSITTDVAV PVTQPFSESSNSENENVIHAEAEGGETFSEADFRQIKATINDKLNLARQLVNSASAARKDSIRNRRKAVENVSLASLKYM ELEKQLEEACDAEDFEGLNRLPKAAEKEKQAFTNSLRDADAFIDALELKLQHALDSYIAAEEECAILLDHYATNALNNSD SSLKKATSLHSKEMDQWLSSSEALEVKKTELEIESHFISEAHLELDNTIKHSIKDNKREKEILCKRKNMLIGELEKLLVL VKQKEKEIADNDTNLKAVEDKINNVVSGFQEVQSNVNVKYDELQSLLAQVRLEIETLALKKEEIDNFLTKEEEMGAKLRE IARISEEEGKGYREIVKLRRSLMLSIVKSREDKLTLANNEEKLSGDVNLCQLEVSAARASLQELSSRKSSIQQDIASSKQ RIIFIDKRVPELEAEKKVATAARNFKDAARIAAEAKSLCVEKEGMQIDMDTATLNLEKLEEEIKDTLNKLQETEGMILVK EKELAMARYQRLLLTAAMARAEKVAALEMGDVEEANLLLAEAEAADCEAEKLQSTYSFKAEDLTNVWKHLISMDLVSHVD QKQLQELAVTLNLYTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 60 | 60 | - | – | |
| PANTHER | 3 | 733 | 731 | 3.7E-243 | – | |
| MobiDBLite | 25 | 41 | 17 | - | – | |
| MobiDBLite | 42 | 60 | 19 | - | – | |
| MobiDBLite | 85 | 101 | 17 | - | – | |
| MobiDBLite | 85 | 130 | 46 | - | – | |
| Coils | 283 | 303 | 21 | - | – | |
| Coils | 401 | 421 | 21 | - | – | |
| Coils | 440 | 460 | 21 | - | – | |
| Coils | 541 | 561 | 21 | - | – | |
| Coils | 602 | 636 | 35 | - | – | |
| Coils | 675 | 695 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0462300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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