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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0002100 |
| Transcript ID | LotjaGi3g1v0002100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT1G73110.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|I3T3C1|I3T3C1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0002100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:279455..286924) extracted from Lotus japonicus Gifu genome v1.2.
AGATAATAATTGGGATTGAGTTGAAGCCGTTATGTGGCGGGCAAGGGGTGGGAAATGGAAATCTAATCACTCATGCATCA GAGTCACATGGCGAAGGTGTTACCGTTATGGATTCCGGTTCCGAACTCTAAACACGCATTCAGATCGCAATTGAGTGTTC GTGTTCGTGTTCGTGTTCGGTGCAGCAGTGATAATAATAACAAGAAGCGGTTGTCACAGCAATCATCTTGGGAAGCGAAA GATGCAGAGGGAAGAGACTATCTCTACAGGCTTGGTAAAGAGGCTGATAACATGAACATCGCCGTCGGCCAGCGTGCCGG CGTCATCGATGATCTCTTCGCCGGCAATTTTCTCGGCAAAGATTGTAAGCAATTATGCATTTTCATTCATTCTTCTCCCT CCCTCCCACACAGACACACTCAATTTTCTGTGTTGCATTTGCATGCAGCCGATATCGTGTTTGATTATCGTCAGAAAGCC ACCAGATCCTTTCAATACCTTCAGGGCGATTATTACATCGCTCCTCTCTTCATGGTAATTTTATTTTATTTATTAAACCC TTTCAAATTAATTAATATTAATATTCCTTTCTTCACTCACTACTTTCTCAATGCACTGCTATTAATCTATTAGCTTCTCT TCACTTTCTTTTCACAGGACAAAGTTGGTAAGTTCTCTCAAAATGGGCCAATATCAACATTCATAAGTCATTTTGATGCA GTAAGACAGCTTGGTAAAAGTGATTTATTTGCTCTCTTGTACAACTCATTGTAACTTGATAACATTTGTCATCATCCTGT ATCAAATCTATTCTCTATCAGTTATGTACTTTCAATGCTGGTTCCTTCTAGATGCTTGTTCTCCCTTTCCTCGTAAAAGT GAAAATATATCAAAATCACAAAGTTCATACTTCCTGGATTCCTCTCTGTTTTTCCTTATGTACAGTACCATATTCTGAAG TCATTTAATATTATAAATCTTCAAATTTTACTTATACATGATGCACATTATTGTAACCTTTTTCTGTGAATGCAGTATGT CACATTGCAAAGAACTACCTAGCTCATCTCCTCAATGTTAAGGTTCCTTTAATTCTAGGTATAAACCAAACTACAAATTA ATTTTCATGTAGCTTATATATATGACCCTAAAGAAAGTAAAATAACAATGTTTAGGGATTAAATTTAGAGAGTTTCTTTT CACAAGTTTGTATTTGTGAGGTCTCTGCTCGCCTGCTGCAAGTAAGATCTGTTAAAAACTGTTCTTATCTATTAGTCTTA AATGTGATATTAGTGTTCATACTGAAAACGTCTACCATGATTATCCTTAGTCCAATATAAGTTCACCCTGATAATTTTAA ATTTAACCAGGCTGAAAACATATGCACACAAAGAAATCTTCGGGATCAATATAAATACATATAGAATTGTTTTTATGCAT TCTGTTTTAAAAGTTAACGTGTATCTTCACTTTATTTCAGGTATTTGGGGAGGAAAAGGGCAAGGGAAAACATTTCAAAC AGAACTTATATTTCAGGCCATGGGTATGGAACCTGTAATTATGTCTGCTGGGGAACTAGAATCCGAGAGAGCTGGTAAGT TGTTTGCTTTAGTAAACAGTTCTCTCAAGGAAATAAAAAAGTGAACAAAGTCATGCATATTTTCATGATATAATTGGATT TTGATGTTCACTAATCCTCACACGGTCACACCTAACAGTTGAAAATGATTGATGGAATTATTATTTTTCATTCCAATGTT CATTTTGTTCTTCCTCTTTTTTTTTTCAGAATGTGTATAGTTACGCATTACGCATATCTGTATGGTTTTCTAAATTTTGA TTTATGTAATAAATATGTGTAACTGACAGAACTCCACCATCCTACTAACTTCCATTAACAGGAGAGCCAGGACGGTTGAT TCGTGAACGCTATAGAACAGCATCTCAAGTGGTCCAGAATCAAGTTAGGAGTTTTAAACTTTTGCGTATGTCTTTGGTTT TTTACTTCGTGCTTAATTACACAACTTTGGCTTGGGAAACGATAACATTCCATTCTTTCATAGAAGTCGAACACTTTGAT TTTGTCTTCTTTCTTAGGTATTGCGAAAATGTTGCACTAAGCCATAATTTCTAGGGTGAAAGAAGTAATGTTTTCACAAA AGACAACTTTGAAGACATTTCAATTTAAACATAGATATTTCAAATCAGTCTTTCTTGCCTTTACCTTCTCTATGTTGTAT GCAGAAAATTATGTTAATGTGATTGATTTTGAAGAAAGTGACATCTGTGCTTCAGTTTGTGCTAGTTGACCTCTAACGCT GGTCACACAAAAATTGTTTTGCATCTTCTTATTTTTTTTTCTGCTTGCCGTTTCTCTTTTTGGGTATGTGCTTATGTACT AATTTTCATCTACTATCAAAGGAATTTAGGTTACAAAGAAGGGAGCCCAACATGCTATCTTGCATCTTTAACAGGACTGT TTTTGTGTCAAAAACACGAACATAGCATTTGGTAGACAGGTTATAACAGAACATAACATGTTTTTTAATATATTTGATGC ATATTAAAAGTAGAACGGAACATGACATAAATTAAAAAGTAGTGCATTTTACTAAAATGGGTAGAGCTAAATTGAACAAG CTATCCTCCATTCCATTTTTTCTGTGTTAAACACTACCTTATTAATGACTTTTTGAAGGCTGATGTGTCCAATTTCCATC ATATAATTTGTCTGAAATGGTTCAAAATTCTTCATACCAGTTTTACCTCTAGCTGTAAAACTTTTTAGTTACACAATGTT ATGGCAATTTCTTAATCTGCTAACTCAGTCTAGTACTGTTTTCTTTATACAGGGAAAAATGAGCTGTTTGATGATCAATG ACATTGATGCTGGCCTTGGTAGATTTGGTAAGCTACTATCTGATTTAGAATGGAGAAACAAATTTCTCTGTAATTTCTAT TCCAAATCCCTTTTTGTTTCTTCCACTATTTTGAGTGTGTTCACGCACATGCACATATTGCATCTCCTAGTATTGCAGTT ATTTGGTCAATTCCTTATTGAACATATCCTGTTTTTGTGCAGGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTT GGGACTCTTATGAATCTGTCTGACAATCCTACAAGAGTAAGCGTTGGCCAAGATTGGCGAGAATCAGATATCACAAACAG AATTCCAATCATTGTAACAGGGAATGATTTTTCAACTATTTATGCTCCACTGATACGTGATGGAAGGATGGATAAATTTT ACTGGTAAATTGCTATCCATCTTATTCTAGGATTATTATACTTACCATTCATGAGTTAAAATAGATTAGTACAGCAGTTA GTTAGTTATTAACAGAAGGTTCCAGCAATTAGTTAGTTGTTAACAGAAGATACCAGAAGTTAGTTATTCATGAAAGAAAA CCTATTATTATTGAATGAAAAGAATAGGAGGGTAATATCCTTCAAGGGTTTTCCCCCTTACAACTAAACCAATGCTCTGT TTTCCCAAATCTGAAAACAAAATGGATTTCCCCCTCTAAACTCACATCCCCTATTTATACATATAACTGATCCCCTCCTA GTAACTGCTAACTAAAACAGCCCTAAGTTGGAGTAACTACCAGGCCCAATCAGGCTGTCAAATTACATTACATCAATCCA TTGCGTTATTATGCATTACTCTATGATCTGTCAAACCAGTTAGGAACTAAGGATATTTGATTTAAGTATTAGTTGTTAAT TCACTCTGTTATTAGGGATTATCTATTATCATTCTATTGTTAGGAATTATATGTTACTTAGAAGTTAGAAGTTAGCTAGG ATAAATAGATTTAAATGTTAGTTTTTTCTGTGAGGAAAAGGGGCAGTCAGTATTATTTGGGGATTGAAAACTCCTGAGTT TGTAAAGAGGACTTCCCTTGTGAAGAAAGTCTTTCCTTCTTGTTTCCAGTAATATTGAAATTCCTTTGCCTAGGGTGTGA AAGCATCAAATCTCTGTTTCTGGTTGGCTTGCATTGATTCCTAACAAAAATACACCTGTCAATCTGTGATTTTTCTACAC AAATACATCCTACTAAATCCAAAAAGTAACTACCATATTTTGAAAACATAAGTGCCCTGCCCCATGCAAAAAACATAACT GTTCTACTAATATAAATGGTAACTGTCACCTATGACACATAACTGTCTTATAACTGCCTCTCAGTTTTTTCTAACATAAA CCTTCATTGTCCTTGGAAGTCTCCATTACTGACCTATCAGAATTTGGCTTATCAGATATCATATAAAATTTCTTATGTTA ATGACTATGAAATATCCGATTTCATGGAAGTAGGTAAACCACATCATTCTTCCCTAAAATATTATCTGTAAATGTGCATC AGGCAACCTAACCGTGAAGATATCCAGAATATTGTTCACAGAATGTATGAGAAAGATGGTATATCAAGGGATGAAGTTGA AAGGATTGTGGATACTTTCCCTAATCAAGGTACTTATCTATGTTTTGTAAATCCAGAGAAGTTTTATTTGTCTGTTTACC CTCTGTTATTACATTTTTTGAATTTTAATAGTATTTCATTTCATTATTTATCTGAAGTAACTTAAATTTTTCATTCACCA AATCCGTACTGAGGATAGAATTTGGAAGGTTGATATCATTCACCAAATCTGTACTGTTTCCGATTTATGTTGTTATTGAC AGCATTGGACTTTTATGGAGCTCTAAGATCACGTACCTATGACAAGTCTATTTTAAAGGTACGCAGATACCCTTACATCA AGATGTTTCTCATCTATCTGATATTTCCATTTCAATAGGGCAAGAAAATTTAATTACCTTCATTGTTTATTATTATTCTG TTCAATATTAATAGTAGGTTTTGATACACCAAGAAAAATGATAGCCAAAAAGAAGAACAAAAGATATGCATTGTTGAGAA GTTCCACATTGACTAGAGATATGGTCTAATAAATGGGAGGATAATCCTCACTTCTAAGCTAGCTTTTGGGATAGAGTTAG ATCTGGCCCAAATTCGAAGATCGTATCAGTGCTTATCCTAGATCCGTAATATGGGTCACCTGCATATTCATTCCTGCAAA ATTCCTGGCTCCAGATGTCATCCCCGGGTGTGTGAGGGGGTGCATTGAGAAGTCTCACATTGACTAGGGACATGCCCTAA TAAATGGCTGGAAAATCCTCACCTCTTAGCTTTTGTGCTAGAGTTAGGTCTAACCCAAATTCTAAGATATACCAAGACAT AATCTCTCATTATGTAACTCCCGAGTAGTTAATTGGTATGTACTTAAAAAAACCAATCGCAACTTGTCTTGGATAATTAG TTCGAGTTGCTTGCATAGAGACAAATTAATGACATATCATTTTGCCTTCTTTCTCCTTTTTTTAATGTTTTGGAGTTAAC CAATCGATGGTTGTCCAATTTGTGTCATGACTGTAGAGAGAAAGGATCTAGACTTAGAACCCTTATTCCGTATGAACTAT AAAAGCATATTGCATATGCACCTTTTATCTCTTTTCATCTCATATTGCAAGCGTGTAGACGGTGTAGTACAAGAGTATCA ATCAACTATGATGAATGAAGACATCTACTTAAGTGATAGTGAGATAGTTGAAGTTGCTAAAAGCCCTTGAAACTATCCCG TGTTTGATAATGGCTTTCTCTGGCAAGATTGGTTTATATATCTATTGCACTCCTCCCACACGGAATAAATGCACATGCCC ACTTTAGCCTGTATTGAAATTCAGTTCAATTATGAAGGTTGGGAGCAATAAGGATTAAACTCCTGAATGTGTCTTAACAG TCAAAGTATACATAACAGTAAACAGTTACGAATACAAATATATGAAATAGTTGATATTTTATTACGACAATGGCAAGCTG CCATTATATATGACAGCTGAAAGGGTAATTTTAGAGATGCCCAACTTTATTTTTTCCATAAAGATCATTCTTAATAACAG GCACAAATTTATGGTTGAATTTTAGTGGGTTGATGACATTGGAGGTGTTGAAAATTTTGGAAGCAAAATTCTCAAAAGAA GAAAGGACCAGAACCTTCCTGTGTTTATTCCTCCAGAGGTAAATTAATCAGCCCTCTTTTCCTGATCTATCCATATTCTG TGTCCTTTTATGGAAGTTTAACTGATTGGAATTAGTTGTTGATCAAATAAATATTGTTAAAATATTGTTTGAGCTCATTT ATTGGTTGAAAATTATAGGTGAGCATGAAATGTTAAGATATAAATATAGCCAAAAGATAATTAGGGTCGCAGTTTTTCTA TTCTGAATTTCTGATGTTATTAAAATCGACTTGACTAATTCGTTCTAGCATTAGAAAAAATATCTTTAAAAAGATAAGAT ATAATGATTATGAACAATTATTGATATTATTATGCAAGCATGTCTATGTTTCCCATTGAATAGATAAGAAAATCAATAAT CTCGTCTTCTTGAATTGAATTCATCAAGAGAATGTTGTGAGCTGTGATTTTCAACATTATAATGTAACTTAACTTCGCGA ATTTATAAAAATTAAAGAAAATCTATTCTTTGCAACATTTGGGTGTCCTCTGCTACATTAGGCATGTACAGCTCTTGACT AATTCTTGTAATTTGAATATTTCATTTCATTCATGAGAAAAATCATTCTTGAGGAAAGTGCAAATGTTTTTGGGAAGCAT ATATGTAAATTATCTGTTTGGCCATCTTTTCTTCTTTCTTTTCCTTTGTCTATTTGTAGTATTTTTAAAATTCGTTTTTT CCTTTTTATAATGTATTGATTTGGTTTTTGTGCAAATAATGCAAATAAAGTTGACTGCCTTTGTATTTGGTTATATAGCA AACAGTGGATGCCTTGCTGGAGTCAGGTTATTCTCTGATCAAAGAACAAGAGTTGGTCATGGAATCTAAACTTTCAAAGG AATACATGAAGAACATGGAAGACTGACATGAAGGGTCTGGGTGCTGTGATGAGAGTCCTCAGGAATTAATTATAGTTGTA AACTCACCATTATCATATGGGATAAGGTCTTCTTTCCAATGGAGTACTTCACTGTGTATATCTCACATTAGCATTCACAA AAAGCCACTTATATGATCGTGTTATCTTTAGCAATCTCAAGCTTCATGTGTTAAAGCATAAATTACTGTAAATGACGCAA TGAATGAAGCCCCAAACTTCAATTTTAAAGACATTTGACGGCTAGAATCATTCTCTGTTTGAAGTTTGAACATAATGATG CTTGGACTGTGGCCAATGGTGGTGCTGTCTCCATAGAAATTAATAACACCATCAAATTGCATTCGTGGGCACAAAAGGAC TTGTTTAGCCACCACAGAATAAGAATATATGCAAATCTTTAGATGATTTGGATTTTAAAATTTTTGTGAATGATAATAAA GGATAAACCGGCAACTTTGCTTCTTCATTG
CDS sequence (LotjaGi3g1v0002100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCAGAGTCACATGGCGAAGGTGTTACCGTTATGGATTCCGGTTCCGAACTCTAAACACGCATTCAGATCGCAATT GAGTGTTCGTGTTCGTGTTCGTGTTCGGTGCAGCAGTGATAATAATAACAAGAAGCGGTTGTCACAGCAATCATCTTGGG AAGCGAAAGATGCAGAGGGAAGAGACTATCTCTACAGGCTTGGTAAAGAGGCTGATAACATGAACATCGCCGTCGGCCAG CGTGCCGGCGTCATCGATGATCTCTTCGCCGGCAATTTTCTCGGCAAAGATTCCGATATCGTGTTTGATTATCGTCAGAA AGCCACCAGATCCTTTCAATACCTTCAGGGCGATTATTACATCGCTCCTCTCTTCATGGACAAAGTTGGTAAGTTCTCTC AAAATGGGCCAATATCAACATTCATAAGTCATTTTGATGCAGTAAGACAGCTTGGTAAAAGTGATTTATTTGCTCTCTTG TACAACTCATTGTAA
Protein sequence (LotjaGi3g1v0002100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHQSHMAKVLPLWIPVPNSKHAFRSQLSVRVRVRVRCSSDNNNKKRLSQQSSWEAKDAEGRDYLYRLGKEADNMNIAVGQ RAGVIDDLFAGNFLGKDSDIVFDYRQKATRSFQYLQGDYYIAPLFMDKVGKFSQNGPISTFISHFDAVRQLGKSDLFALL YNSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 130 | 94 | 3.3E-43 | – | |
| PANTHER | 37 | 130 | 94 | 3.3E-43 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0002100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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