Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0003800
Transcript ID	LotjaGi3g1v0003800.3
Related isoforms 3	LotjaGi3g1v0003800.1 LotjaGi3g1v0003800.2 LotjaGi3g1v0003800.4
Lotus japonicus genome version	Gifu v1.2
Description	Galactoside 2-alpha-L-fucosyltransferase; TAIR: AT2G03220.1 fucosyltransferase 1; Swiss-Prot: sp\|Q9M5Q1\|FUT1_PEA Galactoside 2-alpha-L-fucosyltransferase; TrEMBL-Plants: tr\|I1M5Z1\|I1M5Z1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0003800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:491989..495580) extracted from Lotus japonicus Gifu genome v1.2.

AATGTTTAAAATTAAGGTAGCGTTTGGTAGACATGTGGAAGGCGAATAAAACATGACATTGAGTTTCGTTCTATGTTTGT CATATTTTTAAGATGAAACGAAATATGACATAAAGCTCTTGGAACAAAATATTTTGGTTCCATGGAAAGTAGTAGAACGG AAGAGAACAAAACATAACTTTCTCTTAAACATTTTTCACGGTAAAATTGCTCCGAATTTATATTTGAAATTATGTTTTCT TGACAATGATATATAAAGGAGTTGTCTAAATGACCCATGAGGAAGTTTGTGTTAAATAACTCATTATTCAATCACATTGA AGATAAGTGAGATATAAATTTCAATTCGCTTATCTTCAATGTGATTGGATAATGAGTTATTTAACCCAAATTTCTCATGG GCCATTTAGACAACCTCATACATAAAACATACACCTCACTATTATAAGTAAAAATTAACATTTTAGATTCATTAAATAAA TGATGTATGACTAGATACATCATTTATTGAATAAATATAAAAATTGTTTTTGCTTATAATAGTGACGGGAGGGTGTAAGT TTTTTTTCAAAAAGGTATTATGCTTGAAACTTAAAAAAAAAAGGTATTATGCTTTGAAAGTTTTGTAGGAGGCAAATGCT TATATATAATTGGTAAAAAAAAAACGCGACCGATCTGGTCACAGAGAAAGCAATTTCTTTATTTTTTCTCAATTGACTTT ATGTCGATCCAAATTTGAGGATCTACTTTTGGGGCTCTCACTACCCTTTCTCTGATGAGATGAATCACCGACGCCATTAA CACCAAGGTTTTTTTTTTCTTTCCCATTCCTTGCTTTTCATGGATTTACTAGCTGCTTTATTTACTCACTCTGTACAACA ACTAGGACAATCAAACATCGAATATGAATGTGGTGCTATTTCAGTGTACATGTTATGTTATGGGTAATTATTTGATATAT CTGAACTCTGAATTTACTTGCATCTCTATGTTGAAGGTAGTTTGATTACTAGAGTAGTAGCCTTCAACGATTTTGGCCAT GTAGAATCCTGGACAACTTTTCAAGTATAGATGGATAAAATGGGATTAAGTTTCAAGAGATTCAGAACATTAGTGGTTCT GGGTTCCATAACCTTCTCTATTTTAATCACATTTTCTCTTATGCACCAAAACTCAATCTTCCAACTTGTTGACGGGTTTT CGAAGATTGACGTTTTGGCTGCAAGGCCCCAGAATGCTACTACCAATGTCTTGGAACAAGGGGATACAACTGTCACAGTT AAAGCTGGGGGTGGAAAAGATCAGAATATCACAGAGGTAGGTAAGGGCTACCACTGCTTACAACCTGTTATTGTTGACAA CTGCGATGTTCGTCATATTTTGTTATCATCATGTGTTTTTGATTCATCATTACTTAGTTACTTCATTTGATGTCCTTAAC ACCTGATCTATAACTTGTCAGATAAGGCGTTGAGAGACAAAGATCAAAATGATATGCCTGGGATCTTCCCTGAACAAGCT CATACACAAACAATCTCAGATATTGGTATGACTCTCGGTTGCAGCTTAATTTCAGCCCATTTTATTTGTTGATTTGCCTA CTTCATTATTCATTGTTTCATGATCACTATAAGGGTCTATTTGTCGCAAACACTTGACTATTGAACTTAAAGATGGCGTA ATTATTGAGTTGAACTTGAGAAAAATACCAATTAATAGCAGCATCGGTAGGTTACCATTGGTTAAGGCACTCAGATTTTT AAATCTAGCTGGATCTTATATTAAAACTAGCATTATGATGCTTTTATCTAATGCATTCACTTCCAAAGGTCCAAAGCTAT CATGAGTTAAATAAGATTTAACATTGTGATCTGGAGTTGAATGTTACATAGAATTGTGTCTGACTTTTATTTTTATTTTC TTCATGTCCACATCTACAGGTCCGAAGAATCTTTCATTTGAAGACAAGAAGAATGACCCATCCCTATCTACTACGAGCAT TACTAATGACCAACTCCTTGATGGACTTCTTGTTTCCACATTTGATAAAGCAATGTGCTTAAGTAGGTTTCAGTCTCACT TATACCGCAAAGCTTCCCCTCATAAGCCTTCTGCATATTTGATATCCAAGCTACGAAATTATGAAAGTCTTCATAGAAGT TGTGGACCTCATACCAAATCCTACAACAAAATAATGAGTAACGGCGCAAAATTTAGCAAAAACAGTGCAGGCATAAAGTG CAAATACCTTGTGTGGACAGCTTCCAATGGCTTAGGGAACAGGATGTTAACCTTGGCTGCAGCATTCCTTTATGCTATCC TCACAGACCGTGTGCTACTTGTCCAATTTAGGGCTGATATGTTTGATCTCTTTTGCGAGCCATTTCCTGATTCCTCATGG TTATTGCCCAGGAATTTTCCTTATTGGAAAGATCAGAGACATATTGAAACTTATGAAAATGTGCTGATGAAGAGCAAGAA AAACATTTCACCAGAGGTTTTGCCACAATTTCTTATTCTTAATCTACAACACACCCATGATGGTCATAATAACTTCTTTC ATTGTGATCGAAGTCAAGGACTTCTCCAGAAAGTTCCTGTGCTGATATTGTGGTCCGATCAATATTTCGTCCCTTCTCTG TTTATGATTCCATCATATAGACAAGACTTGATCAAAATGTTCCCTCAGAAAGACACTGTTTTTCACCATCTGGGACGTTA CCTTTTTCATCCATCAAATGAGGCATGGGAACTAATAAGCAGGTCGTACAAGGCGCACTTAGCCAAGGCGGATGAGAAGA TTGGCCTGCAGATTAGAGTATTTAACTCTCGCAATCACAAGACACCACATCAAACCATTGTCAATGAAATTATAGCCTGC ACCAGCAAGCATAAGCTACTGCCTGAGTTAGACATGCAAAAATCAGCAACTTATTTGAAGAAACAGACATCAAAAGCTGT TCTAGTGGCATCTTTATATTCAGTATATGGTGAGAAACTGCGGACTATGTACCTGACAAACACAACTGTGACCAGGGATA AAGTGATAGAAGTTTTTCAGCCAAGTCATGAAGAGCGTCAAAATTCAAATAATGACACGCACAATATCAAGGCATGGACT GAAATATATTTGTTGAGTTTGTGTGATGCATTGATTACAAGCTCCAAGTCTACTTTTGGGTATGTTGCTCATAGTCTTGG AGGTATGAAGCCATGGCTTCTGCGCAGGGCTTATGGGGAAACCATCCCAGATCCACCTTGTAAACGAGTCAAGTCCATGG AGCCTTGTTTCCACTATCCTCCCAAATATGACTGTAGGGACAATAGAACGGTTGATTTTACTTCCCTCTTTCATTACATG AAGCATTGTGAAGATGTAACTAGTGGACTGAGGCTGGTCAATGCTAATAGCTAGGCCACAGGCACAAACTAACTATTGAT TGAATTATTTGCTACACTAACTAATATCAATAGTCCTTGTTCTGTTAAATATTTCAGTAATTCACTTTCTCCCCGCAACT ATGAAGATTTGTTGAACTCATCATAGATCTTACAACAGAACAATGGTAATTCTCTAAAGATTAAAGACCAAC

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0003800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTGGGATCTTCCCTGAACAAGCTCATACACAAACAATCTCAGATATTGGTCCGAAGAATCTTTCATTTGAAGACAA GAAGAATGACCCATCCCTATCTACTACGAGCATTACTAATGACCAACTCCTTGATGGACTTCTTGTTTCCACATTTGATA AAGCAATGTGCTTAAGTAGGTTTCAGTCTCACTTATACCGCAAAGCTTCCCCTCATAAGCCTTCTGCATATTTGATATCC AAGCTACGAAATTATGAAAGTCTTCATAGAAGTTGTGGACCTCATACCAAATCCTACAACAAAATAATGAGTAACGGCGC AAAATTTAGCAAAAACAGTGCAGGCATAAAGTGCAAATACCTTGTGTGGACAGCTTCCAATGGCTTAGGGAACAGGATGT TAACCTTGGCTGCAGCATTCCTTTATGCTATCCTCACAGACCGTGTGCTACTTGTCCAATTTAGGGCTGATATGTTTGAT CTCTTTTGCGAGCCATTTCCTGATTCCTCATGGTTATTGCCCAGGAATTTTCCTTATTGGAAAGATCAGAGACATATTGA AACTTATGAAAATGTGCTGATGAAGAGCAAGAAAAACATTTCACCAGAGGTTTTGCCACAATTTCTTATTCTTAATCTAC AACACACCCATGATGGTCATAATAACTTCTTTCATTGTGATCGAAGTCAAGGACTTCTCCAGAAAGTTCCTGTGCTGATA TTGTGGTCCGATCAATATTTCGTCCCTTCTCTGTTTATGATTCCATCATATAGACAAGACTTGATCAAAATGTTCCCTCA GAAAGACACTGTTTTTCACCATCTGGGACGTTACCTTTTTCATCCATCAAATGAGGCATGGGAACTAATAAGCAGGTCGT ACAAGGCGCACTTAGCCAAGGCGGATGAGAAGATTGGCCTGCAGATTAGAGTATTTAACTCTCGCAATCACAAGACACCA CATCAAACCATTGTCAATGAAATTATAGCCTGCACCAGCAAGCATAAGCTACTGCCTGAGTTAGACATGCAAAAATCAGC AACTTATTTGAAGAAACAGACATCAAAAGCTGTTCTAGTGGCATCTTTATATTCAGTATATGGTGAGAAACTGCGGACTA TGTACCTGACAAACACAACTGTGACCAGGGATAAAGTGATAGAAGTTTTTCAGCCAAGTCATGAAGAGCGTCAAAATTCA AATAATGACACGCACAATATCAAGGCATGGACTGAAATATATTTGTTGAGTTTGTGTGATGCATTGATTACAAGCTCCAA GTCTACTTTTGGGTATGTTGCTCATAGTCTTGGAGGTATGAAGCCATGGCTTCTGCGCAGGGCTTATGGGGAAACCATCC CAGATCCACCTTGTAAACGAGTCAAGTCCATGGAGCCTTGTTTCCACTATCCTCCCAAATATGACTGTAGGGACAATAGA ACGGTTGATTTTACTTCCCTCTTTCATTACATGAAGCATTGTGAAGATGTAACTAGTGGACTGAGGCTGGTCAATGCTAA TAGCTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0003800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPGIFPEQAHTQTISDIGPKNLSFEDKKNDPSLSTTSITNDQLLDGLLVSTFDKAMCLSRFQSHLYRKASPHKPSAYLIS KLRNYESLHRSCGPHTKSYNKIMSNGAKFSKNSAGIKCKYLVWTASNGLGNRMLTLAAAFLYAILTDRVLLVQFRADMFD LFCEPFPDSSWLLPRNFPYWKDQRHIETYENVLMKSKKNISPEVLPQFLILNLQHTHDGHNNFFHCDRSQGLLQKVPVLI LWSDQYFVPSLFMIPSYRQDLIKMFPQKDTVFHHLGRYLFHPSNEAWELISRSYKAHLAKADEKIGLQIRVFNSRNHKTP HQTIVNEIIACTSKHKLLPELDMQKSATYLKKQTSKAVLVASLYSVYGEKLRTMYLTNTTVTRDKVIEVFQPSHEERQNS NNDTHNIKAWTEIYLLSLCDALITSSKSTFGYVAHSLGGMKPWLLRRAYGETIPDPPCKRVKSMEPCFHYPPKYDCRDNR TVDFTSLFHYMKHCEDVTSGLRLVNANS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31889:SF43 View details on PTHR31889:SF43 Search for proteins/transripts with this domain View external data on PTHR31889:SF43	14	507	494	8.2E-299	–
PANTHER	PTHR31889 View details on PTHR31889 Search for proteins/transripts with this domain View external data on PTHR31889	14	507	494	8.2E-299	IPR004938 Show description in modal box View details on IPR004938 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03254 View details on PF03254 Search for proteins/transripts with this domain View external data on PF03254	27	477	451	7.5E-181	IPR004938 Show description in modal box View details on IPR004938 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.11350 View details on G3DSA:3.40.50.11350 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.11350	288	447	160	2.5E-11	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008107 View details of GO:0008107 AmiGO InterPro QuickGO	Molecular function	Galactoside 2-alpha-L-fucosyltransferase activity	Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R.	Subterm of View details of GO:0031127
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575
GO:0042546 View details of GO:0042546 AmiGO InterPro QuickGO	Biological process	Cell wall biogenesis	A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.	Subterm of View details of GO:0044085 View details of GO:0071554

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0003800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0003800.3