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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0008700 |
| Transcript ID | LotjaGi3g1v0008700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LURP-one-like protein; TAIR: AT3G15810.1 LURP-one-like protein (DUF567); Swiss-Prot: sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12; TrEMBL-Plants: tr|I3SEB8|I3SEB8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0008700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1002774..1005290) extracted from Lotus japonicus Gifu genome v1.2.
GTCACTGCTTCCAACCCCACCAAAAATAATTGTTTAATTAATTGGTTCCATAAATATTGCAACACACACACAATGGTTTC CCATTATTTGCGAGCAATAAAGTGGAATAGAAATTAACACTCTATCATCCATCATCCTTTACCCACTTCACAATCATTCA TTCATTCGTTCACGTGCCCCTTTTCATGATGGCTTCTGATTCTGACTCTTCCGCCGCCGCAGAAAAGATGAAAGACAGTT TCGTCGTAGAAGATGAGCATGTTTCCAACGAAGAGATCCATCTCACGGTGCTAAAAACCTCCCTCTTCTTCGCCGGTGAT GGATTCACCGTGTATGATTGTAAGGGTGAACTCGTTTTCCGCGTTGACTCGTATGGACCTGACAGCAGCGACACGGATGA GCTTGTTCTTATGGATCCCAACGGTCGTTGTCTTCTCACCGTTCGCCGGAAGGTACGCACGCACAACCACCACTACCTAG TTATCTATATATCTTCTGAGTCCAGTAATCGGATTCAACCTTGGAAATTGTTATCAAAATTCAAGGTTTTTTTTTATCTT ATTAATTACATAACTTTGTTATTTTTTTATTCTGTTTACATCTCAATTCCATTCAAATAGGTAAATAATGTGATATAGAA AATAATAGTGATAAGAAGGCAAAGTGATAAGAAAATTGGAAAAAAGTGTGAATTATGTAATCCGATTTCATTCCTCAAAT CTAATATGTGTTTGAAAAATTGATAGCAAAAATTGATTTGTTTTTTAAACAGAAAATAAATATATTATTGAAGAAGAAAA CGCATGAGAACAACCCTCTCATAAGAACAAACCGAAACAACCTCACACAACACGCAAACTCATACTTTTTTTTTAAAAAG TGTATGTTGAATTTGGTTTATGAAAGTGAAAAGTGAAAATCTCGAACAAGTTAATTGGTTGAAGCTGAAAAAACTTCCCA CAAACCTCTAAATGTATCGAATGTCATGTCGGTTAAATTAGTCTTTATGTCGACGCATGGACTAATTTAATACACATGCA TTTGATAAGTAAAGGATTGTGAGATGAGAGTATTTCCTTTTTCTAGAAACTAATTTACACTTTTATGAACTAAATTGAAC ATTTTTTTTACTCAATTTCCATTTTTTTCAAAATTATAAATGATTTTATTTGTTTACTAGAATGTGGTTTTTTTTAATAG ACACTAGACTGTGGTTAAATTCTTGGTAAATTTGTGTTCCATTTGTAAAAAAAATACTATTGGTAATTTTATTGAAATAA AATTTATTGGTATATTAGACAACTCTGAGAATAACTGAGATAGAGTACTAATTTTGTTGTGTTTTTTGGGTTCATTAATT TGAGTGGACTTAGTGAATTAACATCTAATTGTGAAGCAGAGGCCTAGTTTACATCAACGGTGGGAAGGCTTCAAAGGTGA GAGATCGGACGGTGACAAACCAATCTTCAGCGTGAAGAGAGCATCGATCATCGGACGATCGAGTGTGACAGTGGAGGTGT ACAATAGCCCAGGTGAGGAGTACCAGATCGAAGGGTGCTTCTCGCAGCGTTCCTGCACATTTTTCAACATGATGAAGGAA TCAGTGGCTGAGATTCATCGTAAGGTGGACCCCACCACAGGTGTCATGCTTGGGAAGGAGGTGTTTTCTCTTAGCGTGAA GCCTGGTTTTGATGCTGCTTTTGCCATGGGTTTTGTGCTTGTTCTTGATCACATCAGCGGTGAGAGTTTCTTTGATGATG ATGATGATGCCACAGCTGAGCCTACAGTGCACCCTACTATTACTACACAAGATTAGCAACTCCTCTACTATTAGTTATGG TGCATTGCAATTTGCAAGGTTAATCATGCAATTTGGTAACTATATATTTTGAATGAACTTTCTTTAAATTTTTCATGGCA TGGGGTTTTATTTAATTTAACCTGCTAATAATCTTTGGAATTTGGAGTGTCCCTTAAAAAGGGAACATGTGCCCCTTCTT TTGTGGATCATGCCCTTGAAAAAGTGATGTTTCTATTTATTATGTGATCGTGTAAATTTTATATTTATTCATAAAAAGTA TACACATTCTGCTCCAGCTTACCTGCTCTTAATCAAGGTTATTTTTTTCCCTATAATATGAGAAATGTTTGGATTTAGTG AGTTTTTTTATCCGAAAATAATGAGCTGACATACAGAATTTTTCCCCTTCTAATATATTACATTAGCAACGGTAAAAACT CGCAATTTTCACTAATGGGTATATCGTAAGAGTGTTCGAAGAAATTTAGATATTTACATATCATCACTATTTACTCTTAT TAAATTAGCTAACAAATGAATTATACGTTAGTAGTTTATATATTTAAAAGTGTAAATGGCCTGAAGAGAAGATATAAGTA TGAAGAATGTACTGTTATTGGGCTTACAATATTTGTATCAGGTGGGCTTACCGAATTTGTACTATTGGTCCAGGCGACCC ATGACCCGAACGGGTCAAAACTTCATAATATATAAAG
CDS sequence (LotjaGi3g1v0008700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTTCTGATTCTGACTCTTCCGCCGCCGCAGAAAAGATGAAAGACAGTTTCGTCGTAGAAGATGAGCATGTTTC CAACGAAGAGATCCATCTCACGGTGCTAAAAACCTCCCTCTTCTTCGCCGGTGATGGATTCACCGTGTATGATTGTAAGG GTGAACTCGTTTTCCGCGTTGACTCGTATGGACCTGACAGCAGCGACACGGATGAGCTTGTTCTTATGGATCCCAACGGT CGTTGTCTTCTCACCGTTCGCCGGAAGAGGCCTAGTTTACATCAACGGTGGGAAGGCTTCAAAGGTGAGAGATCGGACGG TGACAAACCAATCTTCAGCGTGAAGAGAGCATCGATCATCGGACGATCGAGTGTGACAGTGGAGGTGTACAATAGCCCAG GTGAGGAGTACCAGATCGAAGGGTGCTTCTCGCAGCGTTCCTGCACATTTTTCAACATGATGAAGGAATCAGTGGCTGAG ATTCATCGTAAGGTGGACCCCACCACAGGTGTCATGCTTGGGAAGGAGGTGTTTTCTCTTAGCGTGAAGCCTGGTTTTGA TGCTGCTTTTGCCATGGGTTTTGTGCTTGTTCTTGATCACATCAGCGGTGAGAGTTTCTTTGATGATGATGATGATGCCA CAGCTGAGCCTACAGTGCACCCTACTATTACTACACAAGATTAG
Protein sequence (LotjaGi3g1v0008700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMASDSDSSAAAEKMKDSFVVEDEHVSNEEIHLTVLKTSLFFAGDGFTVYDCKGELVFRVDSYGPDSSDTDELVLMDPNG RCLLTVRRKRPSLHQRWEGFKGERSDGDKPIFSVKRASIIGRSSVTVEVYNSPGEEYQIEGCFSQRSCTFFNMMKESVAE IHRKVDPTTGVMLGKEVFSLSVKPGFDAAFAMGFVLVLDHISGESFFDDDDDATAEPTVHPTITTQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 211 | 197 | 1.0E-99 | – | |
| PANTHER | 15 | 211 | 197 | 1.0E-99 | ||
| Gene3D | 17 | 206 | 190 | 1.7E-61 | ||
| Pfam | 19 | 197 | 179 | 2.2E-56 | ||
| SUPERFAMILY | 19 | 201 | 183 | 6.02E-50 | ||
| MobiDBLite | 208 | 227 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0008700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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