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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0027400 |
| Transcript ID | LotjaGi3g1v0027400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein IQ-DOMAIN 1; TAIR: AT2G26180.1 IQ-domain 6; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|A0A1J7I825|A0A1J7I825_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0027400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2968877..2972018) extracted from Lotus japonicus Gifu genome v1.2.
AGTCAACTCAGAGCCTGTGGGGCGCGAGATTTTGAAATTTGAGCATCCAGTTTGGTTACCGTTATCACCATTCCTCTTTC TCTTTCTCTTTCTCTTTCACCCCACCATTCATTTTCAAATTTCAAATTTTCATTCTGTCTCCCTCTCACTCTCACTCTTC CTTAATTAACCCAAACAACAGTGACCACAAAATCTCGTACACACAAGACAAAATCATCAAAACTCACTCTCTCTCTCTCT CTGTTTCTATTATCAACTACTTGCTGCAACACAGCAGAAGCTACCTCTGATCTGCACTCTACTCATTCACCTCTGCAAAA ACGGAATCTTTTCTCCAATGGGTGCCTCAGGAAGATGGTTTAAATCTCTTCTTTCTCTTAGAAAACCCTCAACCACTGAT CAAGTAATAACTTTTTTTTTGTTTTGCTTTGATTTTTAAGCTATGATCCTCAATTATGGTGTTATTTACTCTCTACTTAG AATTGTATGATGTGTTGTTGTTCAGGAAAAGTGCGGTGGTGATACCAAGAGTAAGAACAAGTGGAAGAAGCTATGGAGGA CCTCTTCAGAAGGGTCCTCCATGAAGAAGGGTTGTGGTGGTGCTGGTGTTTCTCATTCCTCTCCACTTACTGCTGCGGTG GCTGTGGTGGTTCGAGCTCCACCCAAGGATTTCATGCTTATCAAGCAGGAATGGGCTGCAATTCGGATTCAGTCTGTGTT TCGAGCCTTCTTGGTAACTTCCTCTCCTCCCCTTCTCCTCTAACTTCAAGCCTTTGCAGTTGCATAACATTGTTAGCTTT GAGCTTGTTGTATGCTATGTATGAGTTTTTGCTTTCTAATTTCTTCAATTGTATTTTCATTGCACTAGATCTATGTTTCC TGTCCAGCAAATACATAATTGGGCATGAAATTCCAATTCCAATTCCAATTCCAATTTAGGATCAGGAGTTAGGAACATTA GCATGAACATTACCTCCAAAATTAGAATCCCCCCCCCCCCCCCAAGGCCCCCATAAATTTTGTGCAAAATCCACTAATAG ATTGAAATTACAATATGATGCCTATGTTTTCAACTTTCTAGAGTATTATGACCTCTTCTTTGTTTTATGGAAAGATAAAT GTCTCAGGTTTGATTTGGATGGTTTTGGTGCTACTGGACTATGGGAAATTGGGAACATTATTCAGAACTGATTTTGGTTT CTTTTGATTTTCCAAATCTAGCACTTTGTTTATGACAGAAAATATCTGTTCATCACTTCATTGCTTATTCTAGGCTTAAT TGCTGATGTTTTTGCTTTCAATTTTTCTTTCTTTCTTTCAAATTGATCTTACTTGTATTTATACACATTGCAGGCTAGAC GAGCTTTGAGGGCCTTGAGGGGAGTGGTGAGGCTGCAAGCTATATTTCGCGGCCGGCAAGTGAGAAAGCAAGCAGCTGTT ACTCTAAGGTGCATGCAAGCTCTTGTTCGAGTTCAGGCACATGTAAGGGCTAGGAATGTGAGGAAGTCTGAGGAAGGGAA AGCGGTGCAGAAATTACTCGATGAGTATCGCAACCAAGCTGATCCTGTTAAGCTGGCTGAGGTATCATAATGTTAAATTC TCTAATGTTTCTCAGTTTTAAGGAGATGCTAACATATTGCATATTTTGACATGTTATTATCAGCATGGATGGTGTGAAAT TCCTGGAACTGTGGATGAAGTTAAAACAAAGCTAAAGATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCTATGGCAT ACTCTCTCTCTGCACAGGTAATGTTGTAGAGAAGATCTAATGTATATAATTCTGTTCCTTCGGTAAGATTTATAGCATGT TTGGATCCACTTCTCTTTTCACAAAATCAATTTCGGCACTCAGAAGCTATTGTAGTTTCTTCCTATAATTGATTTTGGCT TCATATTCAACTGTGGAATAATATCCAAGCATGCCCTTAATAGTTGTTTGGTTGCACAATTTTCAAAGAATCTAAGTCAA ATTTACTTTAAACCTCAGACTTATAGCCTCTAACCAGAAGTGATTTTAGAGCGTTTCACTGTGTAACCAGACATGTTATT AGATAAGTTAGAATTATTGGCAAATTCATTTGATTCCAATGACTGTGTTTGCTTGTAGCATTCAAGACTGAGTGCTAGTC CAAACTCCAAAGCCACAAAATCAGTGACTCTTCTCAAGCATCACAGCATAGACAACAAGAGCTTAGGAAGCAGCTTGTTA GAAAAATGGATGGTGACCAAGCCCTGGGAGAGTCCAATCTCAAGGAAGAGTGAAGACCTTGTTCCTCACTTTCAATCAAG AAGGAATGGTGTGACGACTAGGATTTCAGTTAAACCCCTTGCAACATGTCAACCAACTTCATCATCATCAACCATAAGCT CTGAGTATGATGATAGCCCTGCTGTATCAACTACATGCACATCTGCATCTTTGCCATCCACCAACACTGCTATGGTGGAA GCAACAGAGGAAAGAGATGTTCATCAACCTAGCTACATGAATTGGACTCAATCAACTAAGGCTAAATTGAAGTGTTCTTC ACAGAATTCAAAGAAGCTTGGAATGGAGGATTGTCTGTCTCATAGTACAACAACAGTAACAAATGGAGATAACAGAAGCA GTTCTGGTTCTGATCCTTCAGTGAATTTGTGGAAGGATCTTTGTTCTACACCTCTAAGGGCAAGGTATCAAAAGCGATAT GCTGGGCCAGGAAGATGAAGAGCTTCAACTTTCAATGAGTTCAACAGCTTGTTGTCCATTGTCACCTTGACATAGTTGTT TTGTGTGAAGAATGAAATACCAAACTAGTACAGTAGTTCAAACTTCAAGCTAGTTGTTTTGTGTGAAGAATGAAATAGCA AACTAGTACAGTAGTTCAATTTGGATGGTGTTTTATACATTAGTATATTATATATACACATGGTAGATCTATGTTTGAAC TATCTAATAGAATCTCAATGTAAGAATGAGTCTTTTGGGATAAGCCAGTCTTTTAAAAATAGACATTTCTAGTGGCATTC GGTCATAATTGGAAAAATTAGCTGAGAATCCAATTGGAAAAGCTTAGCTCAAACTTGTGCTTGATTAGCAAATTATTCAC CTAGGAAATATTGACTCTATTG
CDS sequence (LotjaGi3g1v0027400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCCTCAGGAAGATGGTTTAAATCTCTTCTTTCTCTTAGAAAACCCTCAACCACTGATCAAGAAAAGTGCGGTGG TGATACCAAGAGTAAGAACAAGTGGAAGAAGCTATGGAGGACCTCTTCAGAAGGGTCCTCCATGAAGAAGGGTTGTGGTG GTGCTGGTGTTTCTCATTCCTCTCCACTTACTGCTGCGGTGGCTGTGGTGGTTCGAGCTCCACCCAAGGATTTCATGCTT ATCAAGCAGGAATGGGCTGCAATTCGGATTCAGTCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAG GGGAGTGGTGAGGCTGCAAGCTATATTTCGCGGCCGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAAG CTCTTGTTCGAGTTCAGGCACATGTAAGGGCTAGGAATGTGAGGAAGTCTGAGGAAGGGAAAGCGGTGCAGAAATTACTC GATGAGTATCGCAACCAAGCTGATCCTGTTAAGCTGGCTGAGCATGGATGGTGTGAAATTCCTGGAACTGTGGATGAAGT TAAAACAAAGCTAAAGATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCTATGGCATACTCTCTCTCTGCACAGCATT CAAGACTGAGTGCTAGTCCAAACTCCAAAGCCACAAAATCAGTGACTCTTCTCAAGCATCACAGCATAGACAACAAGAGC TTAGGAAGCAGCTTGTTAGAAAAATGGATGGTGACCAAGCCCTGGGAGAGTCCAATCTCAAGGAAGAGTGAAGACCTTGT TCCTCACTTTCAATCAAGAAGGAATGGTGTGACGACTAGGATTTCAGTTAAACCCCTTGCAACATGTCAACCAACTTCAT CATCATCAACCATAAGCTCTGAGTATGATGATAGCCCTGCTGTATCAACTACATGCACATCTGCATCTTTGCCATCCACC AACACTGCTATGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAACCTAGCTACATGAATTGGACTCAATCAACTAAGGC TAAATTGAAGTGTTCTTCACAGAATTCAAAGAAGCTTGGAATGGAGGATTGTCTGTCTCATAGTACAACAACAGTAACAA ATGGAGATAACAGAAGCAGTTCTGGTTCTGATCCTTCAGTGAATTTGTGGAAGGATCTTTGTTCTACACCTCTAAGGGCA AGGTATCAAAAGCGATATGCTGGGCCAGGAAGATGA
Protein sequence (LotjaGi3g1v0027400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGASGRWFKSLLSLRKPSTTDQEKCGGDTKSKNKWKKLWRTSSEGSSMKKGCGGAGVSHSSPLTAAVAVVVRAPPKDFML IKQEWAAIRIQSVFRAFLARRALRALRGVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAHVRARNVRKSEEGKAVQKLL DEYRNQADPVKLAEHGWCEIPGTVDEVKTKLKMRQEGAIKRDRAMAYSLSAQHSRLSASPNSKATKSVTLLKHHSIDNKS LGSSLLEKWMVTKPWESPISRKSEDLVPHFQSRRNGVTTRISVKPLATCQPTSSSSTISSEYDDSPAVSTTCTSASLPST NTAMVEATEERDVHQPSYMNWTQSTKAKLKCSSQNSKKLGMEDCLSHSTTTVTNGDNRSSSGSDPSVNLWKDLCSTPLRA RYQKRYAGPGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 406 | 406 | 8.0E-203 | – | |
| PANTHER | 1 | 406 | 406 | 8.0E-203 | – | |
| Gene3D | 83 | 124 | 42 | 1.9E-5 | – | |
| ProSiteProfiles | 83 | 111 | 29 | 9.285 | ||
| Pfam | 85 | 104 | 20 | 6.2E-5 | ||
| ProSiteProfiles | 107 | 134 | 28 | 7.766 | ||
| MobiDBLite | 369 | 388 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0027400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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