Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0027600 |
| Transcript ID | LotjaGi3g1v0027600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 5'-nucleotidase surE; TAIR: AT1G72880.1 Survival protein SurE-like phosphatase/nucleotidase; Swiss-Prot: sp|A1VY14|SURE_CAMJJ 5'-nucleotidase SurE; TrEMBL-Plants: tr|C6TGC8|C6TGC8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0027600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2991791..2995663) extracted from Lotus japonicus Gifu genome v1.2.
CTACAAACAAAAAACAATGTCTTGTTCATTGATTATCACTCTTCTTTATTTAAAGATCCCAATTATTTTTTCAAAGTTTC TCTCTCTGAAAGCAAACCACTTTCAATTTTCAATTTCAAAGCTTTGTTGTGTTGTGTTGTGCTGTGTTTTCCACGTAAAC GCCGTTAGAATCGCTCTATTATCCATCCATCCATTTTCCATTCCAATTCTCTTCCTCCTTTTTTCTCTCCCTTTTCCCTT CCCTTTCTCTTCCACTCCAATTTTTTAGGGTTTTTCAATCTTCCCCCAATTTCCCAATTCAACGTCGTCGTTTCAACATG ATGCCCCCGGGCCTCGTTTCCAATCTCCAAGAAGCGCTTCTCAACCGGAAATCCCCCCAAGAACCACCGCAAGAACAACC ACCGCAATCCACCAACGACACCGCTTCTTCCGGCGAGGAGCCTCTCGAATTTGATCCCTCCAAGCCCATTGTGTTGGTCA CCAACACCGATGGGGTTGAATCCCCTGGCCTCACGCACCTCGTTGAAGCTCTTGTTCAACTAGGCCTCTACAATGTCCAT GTCTGCGTTCCTCAATCGTGGGTCTTGTAAATTTCAGCTATTTTGAATGTTTTGGTTTGTGGGTTCTTGCTATATTTGGT TATTTCGTTCAAAGCTTGGAAATTTTCTATGATTTAGGGATAAATCAGTTTCTGGGCACTCTGTCACCTTTGGAGAAACT GTGGAAGCTTGTTCTGCCAAAGTTACTGGTGCTACAGCATTTGAAATTTCAGGTTTCACTTGAATTATATTCTCTTCAAA TGTGTTTTTCATTCCCTATGTATATAGTTCATGTTAACTTAGTGCATATATGATGTGGATTTACTGGTCTTTGTTAATTT TTGTATGATTCATATTTTGGGTGGCTTTATCAACATAGTTGCAGATTCTTGGTTTATATTGTAATACTAATGTAGTTACA TTAATTTCTTGTTGTTTTCTAATTTTTAACCCTAGGAACTCCTGCGGATTGTGTTTCACTAGCATTATCTGGGGCATTGT TTTCGTGGTCAAGGCCTATGCTGGTTAGTGTTTCTATATTGTACAATTGAAATTGATCTCTGTGGTTGTTCACATAATTG AATGCTGAGATTTATAAACGATGATATGATTAAAATTTCAGGTTATTAGTGGGATTAACCGGGGATCAACCTGTGGTCAT CACATGTAAGTTGCTAATTATGGTTAGAGATTAATATATAAGTCCAATCTAACTTAACACACAATCTTCACCTTCCCAAA TGTGATGTTCTATCTTGGTTTCATTTCAAGCTCTATATATATTCTCAAGAATCTGTAGGACATGTATGGACATGTTTATC TCATGCTTTACAATACCCCAGGTTCTATTCAGGGGTTGTTGCTGGAGCTAGAGAGGCAGCATTATCTGGTGTACCGTCAT TATCAATATCATTAAACTGGTAAGTCGATATTTATATACTTCTCAGGGATGGAACTGCATGCATTAAAAATTTGGATTCA CCCTCAAAGAGAATATCTCCAAATGTTGTATTAGCCCCCCTCAATTTTATGCTACATTCTCCAATTAGCCATTGTTGATT TTGGTTAATGTGTTAAATTTTCGCCCCCTTACCCAATATTTCATGTTCCATCCCTTGTATAGGTCTAGTTACTGTGCTTT CATGCTAGAGATTATGAATCTGTATCATATCCTGTTGTAGGAAGAAGGATGAAAGTCAAGAGTCTGATTTCAAGGATGCA GTAGCAGCCTGTTTACCATTAATAAATGCAGCTATCAGGGATGCTGAAAAAGGATCTTTTCCCAACAACTGCTTTATGAA TATAGAAATTCCCACGTCACCCTCAAATAACAAGGTGTGCAGATTTTATTATAAATGTTTTTTTTTTTCAAATGTCCTGC TGCTGTATTACACGAATGCTCTAGGTTTTGGGTCATATATTGTAATGAATTTAGTGTGCATGGTTTATTCTTGGCTGTTA AATTCTAATGATTAAAATGTTTCATGGCTGTTAACGTGGCATATTGTTAACGTAGATCCTGTGCAATCCTTTTATTAACA GGGCTTCAAATTGACCAAGCAAAGTATGCGGAGATCCACACCAAACTGGCTAGCTGTTTCAACTAGCCGCTATCCACCTG GTCATTTCTTGGCCAATCAACAAGGTGGCTTTGGTCTTCAGTTTGCTCAGCTTGGCCGAGATGCTTCTGCTGCTGTAAGT GCCATGCACACTTAACAAATCATATCTTTATGTTCTGTGTATTTAATGCGCGTCTAATCTGTTGATGCTGATAATGAAAT CTTCCTCATCTGTGTACTTCAGGGTGCAGCTCGTCGATTGACCACCCAGAAAAAGAATTTGGAGATAATTGAATCAACTG GAGCTGCAGGAAAACCTGATTCCAACAGGGTGAAGAAATATTTCAGACTAGAGGTAAATTGGAGGGGAAAAGAAAACAAA ATCTTTAAGAGTTTGTGATCATCTTATACGAACGTATTAACATTGATGATTGAACTTACCCTGGTTTTCAATGCTGAGTA TAACAGATAACAATTTGTCAAGAAGAGATTATTGTAGAAATTTGTAATTATTTTCGTGATACATTATCTGTAACCTTGAA AAGATTCATTTTTAATTCTAAGTACACATGATTCCGATTACTCATTTCCCTTCTTGCATTTATTTTTAAATTATTTGAGG TGAACCTTAGCTATATTCTATCCTTGTATCTTCAGTTTTTGGACAAGGAGCAGGAAGAAACAGATGACGATCTGGACTAC AGAGCACTTGAAAATGGATATGTAAGTCAACATTAAATAAATTTCTCAATTAACTAATATTTTTATGTCCTTAATGGTGC ATGTGATTTGGTGAAACAGGTTGCTGTTACTCCACTGTCTCTTTCTCCTCATATTGAGACTGATATTCAAATGGCAGCTT CAGATTGGATCTCTGCTGTACTTCCTGGTGAACAATAAATCAGAAGCTTAGCATGATTGTGTACATCTGAGATTTATGAT AATTCTTTCTTTTCATTTCTTTTTCCCTTAAAGCAAAGATGGAGCAGAAGCGGTAGTCACACACGACTTTCAATAGTTCA TTTTCAATTTGTATTTTTTTTAATCCTTTTTGGCTTTACATTTTTTAGTTTTGGGTTCCCTTCTTCATTGTTTGAGTTCC TTTGGTGAGGTAACTTTGAAGCAAATGCTTCTTGTAATTTCTTGGGCATGTTTTAGAAAAATGCCATTTGGTCTGTTTGT AATAGCTTATAGCATCCATTACACGCAGAACACTGGAAGAGTTGTTGTAATTTTCCCTTTCATTTTAACTTTGGATTTAC GATTTCTGAAATGTTGTCTGATATCTAGCAGTGCTCTAATGAAAGAAATGGTTACACTTTAGTTTCAATTTTGTAACTGT GAGCATATAAAGTAATGTTTCAAATGCAATTGTGTCTGAGCTTTTAAAAATCAGTATCTGTGAAAAGCTTAATTTATGGT GTTAATTGTAGTGATGGGATTGTATGATAAAAAAAGTGATTCTAGGTAAATTGTAATAACTGAGACGTGAAAGGTACAAT AACGTTTGGTGCATCCTAAATCAAAGGACTAGCATGAACGGGGTACAAACAAGTCAATGTCGGCAGAATGGAAGCATTGA AGGTTCTCCTCCTCGCCCAAAGTTTGGGTTTTACTTTGCTTACCTAAAACCAGCTAGCTATCCACTAACCCTAATCATTG CCAATTTGAAATTATTCACCTCTCTCACTGGACCATTTCCATATCTATGTAATTTCTTTGAGATGAAATGCACTGGTCCT TGATATGTTATAGCATCAATCATTGTATCCATT
CDS sequence (LotjaGi3g1v0027600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCCCCGGGCCTCGTTTCCAATCTCCAAGAAGCGCTTCTCAACCGGAAATCCCCCCAAGAACCACCGCAAGAACA ACCACCGCAATCCACCAACGACACCGCTTCTTCCGGCGAGGAGCCTCTCGAATTTGATCCCTCCAAGCCCATTGTGTTGG TCACCAACACCGATGGGGTTGAATCCCCTGGCCTCACGCACCTCGTTGAAGCTCTTGTTCAACTAGGCCTCTACAATGTC CATGTCTGCGTTCCTCAATCGGATAAATCAGTTTCTGGGCACTCTGTCACCTTTGGAGAAACTGTGGAAGCTTGTTCTGC CAAAGTTACTGGTGCTACAGCATTTGAAATTTCAGGAACTCCTGCGGATTGTGTTTCACTAGCATTATCTGGGGCATTGT TTTCGTGGTCAAGGCCTATGCTGGTTATTAGTGGGATTAACCGGGGATCAACCTGTGGTCATCACATGTTCTATTCAGGG GTTGTTGCTGGAGCTAGAGAGGCAGCATTATCTGGTGTACCGTCATTATCAATATCATTAAACTGGAAGAAGGATGAAAG TCAAGAGTCTGATTTCAAGGATGCAGTAGCAGCCTGTTTACCATTAATAAATGCAGCTATCAGGGATGCTGAAAAAGGAT CTTTTCCCAACAACTGCTTTATGAATATAGAAATTCCCACGTCACCCTCAAATAACAAGGGCTTCAAATTGACCAAGCAA AGTATGCGGAGATCCACACCAAACTGGCTAGCTGTTTCAACTAGCCGCTATCCACCTGGTCATTTCTTGGCCAATCAACA AGGTGGCTTTGGTCTTCAGTTTGCTCAGCTTGGCCGAGATGCTTCTGCTGCTGGTGCAGCTCGTCGATTGACCACCCAGA AAAAGAATTTGGAGATAATTGAATCAACTGGAGCTGCAGGAAAACCTGATTCCAACAGGGTGAAGAAATATTTCAGACTA GAGTTTTTGGACAAGGAGCAGGAAGAAACAGATGACGATCTGGACTACAGAGCACTTGAAAATGGATATGTTGCTGTTAC TCCACTGTCTCTTTCTCCTCATATTGAGACTGATATTCAAATGGCAGCTTCAGATTGGATCTCTGCTGTACTTCCTGGTG AACAATAA
Protein sequence (LotjaGi3g1v0027600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPPGLVSNLQEALLNRKSPQEPPQEQPPQSTNDTASSGEEPLEFDPSKPIVLVTNTDGVESPGLTHLVEALVQLGLYNV HVCVPQSDKSVSGHSVTFGETVEACSAKVTGATAFEISGTPADCVSLALSGALFSWSRPMLVISGINRGSTCGHHMFYSG VVAGAREAALSGVPSLSISLNWKKDESQESDFKDAVAACLPLINAAIRDAEKGSFPNNCFMNIEIPTSPSNNKGFKLTKQ SMRRSTPNWLAVSTSRYPPGHFLANQQGGFGLQFAQLGRDASAAGAARRLTTQKKNLEIIESTGAAGKPDSNRVKKYFRL EFLDKEQEETDDDLDYRALENGYVAVTPLSLSPHIETDIQMAASDWISAVLPGEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 10 | 373 | 364 | 2.5E-186 | – | |
| PANTHER | 10 | 373 | 364 | 2.5E-186 | – | |
| Hamap | 50 | 371 | 322 | 24.598 | ||
| Gene3D | 51 | 268 | 218 | 1.1E-53 | ||
| SUPERFAMILY | 51 | 359 | 309 | 1.83E-52 | ||
| Pfam | 52 | 245 | 194 | 7.7E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotidase activity | Catalysis of the reaction: a nucleotide + H2O = a nucleoside + phosphate. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi3g1v0027600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…