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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0032800 |
Transcript ID | LotjaGi3g1v0032800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger, B-box; TAIR: AT1G06040.1 B-box zinc finger family protein; Swiss-Prot: sp|Q96288|BBX24_ARATH B-box zinc finger protein 24; TrEMBL-Plants: tr|I3SAY6|I3SAY6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0032800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3473455..3476922) extracted from Lotus japonicus Gifu genome v1.2.
TAGCCACACAAACATGCTTAGTGCTTTGTTGATGTATCCACAGCCACACACACAATGCAAGTTGACCCCACTAGCTCGTG TTGTTTTCATTACCCTTGTCACAATTTGATGCCTTTGAAACCTCATCCATGCATTTCATTTTCTGCCTCCAACACCTTCT TCCTACATTAAATATCTATGTTCACATCACAAACTTCAAATGTTATGTCTATGTTTTTTGTGGTTCTCATATAATCTTTC TTCTACACCATCATTAACTATATTTGGCTAAACAACTATAGGACTATAGGTTCTAAATCTTTCCTTTCTGGGAAGAGTTG TTAGCAAATAGCTAAGCTAGCTGTCACTCACTCCCTCTAGAGTCTTGAAATATTGTTCCCACTTGAGAAGTTCAAGTTTC ATAAGGAAAGGAAAGGATATTATGAAGATTCAATGTGATGCATGTGAGAAAGCTCCGGCTACTGTGATTTGTTGTGCAGA TGAAGCTGCTTTGTGTGCTCAGTGTGATGTTGAGATTCATGCTGCTAACAAGCTTGCTAGCAAGCACCAGAGGCTTCTTC TTGAAAGTCTATCAAACAAGCTTCCAAAGTGTGATATATGTCAGGTTAGCACCTCAATTTTCCATGTTAACTTCTAGTTT TATCATGCTATTAAATTATTACTCATAAATTGTTGTGCTTGGATGGTTTGACTGTGCTGATTTTTCTTAGTTATAGATAA TTAGATATCAATACATGTTTTGACATGAGAAACTAGGAGGTAATTCAAGTTCTATTGTTTTACTTTTAAGCTAGGCCAAA CTTACTATTAGCATGTTTGGACCGACCTCTTGTTTTTAGAATTAATTCTGACAGCAGAAGAGCTTATCCACATAATTGAT TTTGACTTTAAAATTAATTGTAACAAAGATTTCCAAACATGCGCTATGTTATTGGAATCACCACCAGTGAATGGCCAATG GACTGAGATTTATGTTAGAAAAAGGCTTATTCAATGAGCATCTGTTCATCAATTTATCTGAGAAATTTAATAAGATAAGC TCAAAGGAGTTTAGGTTATAAGATAGGGCTGGTACATAGTGAACCATGTATTTTAATACTGGTCCACAAGTGAACCATCA TATTTGGAAGGTCAAATATAATGGTGCACCATTGGACCACTATAAAATGGTCCACCTTATAATATCCCTATATGCTATTC TAATAAATTTAACCAAATATATACTTAATTGTTGATATCCCAAGATAAGTTCAAATAAACTCTAGAGAAACTCTTCCTAA AAACATATTATTAGGTAAAGTAAACATTCTAGATGAGAATGTTGCTTGATATTTTCGACATTATTGTGAAATGTGGACAT TTGTTGACTCCATTTTACTGTTAACACCTGGATTTTGAGCTGGGCTAACTGTTGAAACATGAATTAGGATATCTGAAGTT GCATCTATGACTATGAGTTAATACCTTCTCTCAAAATGGATTTTACATTGTTTTATGTTTGTCTAATGTCTATGGATGTT ATATTAAATATTAATTATCCAATAACTATTTCTCATTTTGCTATTTTCTATATGTAACCACAGGAAAAGACAGCTTTCAT ATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATGCACCTGGAAGCATCTCTGCGAACC ACCAGCGCTTCCTTGCTACCGGTATCAAAGTAGCAGGGAGTTCAAAATGCACCAAAGATGATGAAAAAAGCCACTTGGAG CCACCTAGTAGGAATGCATCTAAAATTTCTGCAAAAATTCCTCCTCAGCAAGTGCCTAACTTCACTGAAAAAATTCCTCC TCAGCAAGTGCCTAACTTCACTGAAAAAGTTCCTCCTCAGCAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACT TGTTGGATATGGAGTTATCAAGCTTTGATTCCCCTGATAAAGTAAGACAGCTTTATTCCATAATTAGAGTTATATAAATT GTCTAAATTGACTTGGAAATTAATGTGTTTTTAATGAAAGATCTTAGTACCATTAGCATGTGGTATTTATTGTCCCAATT GAAATTCCACATGGTTGTAGCTGATGATCCTGACACAATAGTACATGTGAACATTAAAATCAGTTTTAGTAAAATGTGGG CATTTTGATTTATCACATCAAGATAATTGGTTAGTAGATAAGGGGAATTTGGATTGCTAACTGCAGTGAAATCCTAAATT CACACAGTCAAGGTATTTGAGCTATAAGATCAAAATCAGACGGCTCAAATGTTTAATTTATCTGAGCTGTCTGATCTTGA TAAACCCTAACATGTGCGAACTTAGGATTGCATCGACTGTAGGGAACCAAAATCGGTAGCTATGAAGGTTATTGATTTTT GTGATGAAGACAGATCAATCCAGTTTTTTATTTGGTTCTTGATTATTTGAAATATACTTTGAACTATATGTAATCATGGC TATGATATAGAAATTTTCATACTGGCCTTAATAAGTAGTTAATCAGTTACTTAAATATGATGTGCCTCCAGCACCTTATA ATATTTATGACTCTATTTTTTTTTCAGTATGCTCAGAAGGACTCTCTGCAGTTTGGAGAGCTAGAATGGCTTGCAGATGA TGGTCTTTTTGGTGACCAATTTTCTCAGGAAGCATTGGCTGCAGCCGAAGTCCCTCAGCTTCCAGCAACTTATACCAGCA GCAATGTTGCTTCCTACCGAACCTCCAAATCCCCCATGTCAAACAAAAAGGCTAGGATTGAAGTCCTACATTATGATGAA GATGATGATGAGTACTTCACTGTGCCTAATCTTGGCTGAAGCACATGACCATGTGCATGGGACCAGTTTTGGAAATATAC ATTATTTTTTTCAATAGCTCTTAATTTAAAGATGTTGTAAAAAAATAATTATTTCCCCAAAAAGTTATGGCAACATTTTT CAGTTCACTCTATGCTTCAATAATCTGACAGACTTAGCTATGGAATAATCAAAACATACATATTATACCTGCCCATTATT CAAAAATAAACTTTCTTTGCAAATAATCCTCTAAATGAAACAAGATTACTAGATTTTGTTCCAAGTTCAGTAGGTTCAGC TGCTTAATCTTTATGATATGTATCTAGGTAGCCTGAGTTCTTGGCATGGCCCAGAACTCTTAAGTTACATAGAAAATCAT TTTTTCCTGTTCATCAATGCTATGAGCATCCTATAAAAAAGGATTTGGAAATTCATATTCATATCATCAAACAAAGTCCT AAAATTAACCCAAGTTTCTCTCATAAGATGGCCAAAACAATTCCAACTAAACTCTTCTTTCTCTCTACTCCATGCTAACC ATAACTCTATGTCTTATGCGAACACAAACCCTCTCATCTACCCTTGAAGCTGATAGCATTGTCCTTCGTGAGATAAAACG TGCCATTGATCCAAACTCGGTCACCCCA
CDS sequence (LotjaGi3g1v0032800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTCAATGTGATGCATGTGAGAAAGCTCCGGCTACTGTGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTCA GTGTGATGTTGAGATTCATGCTGCTAACAAGCTTGCTAGCAAGCACCAGAGGCTTCTTCTTGAAAGTCTATCAAACAAGC TTCCAAAGTGTGATATATGTCAGGAAAAGACAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGT GATGAACCAATTCATGCACCTGGAAGCATCTCTGCGAACCACCAGCGCTTCCTTGCTACCGGTATCAAAGTAGCAGGGAG TTCAAAATGCACCAAAGATGATGAAAAAAGCCACTTGGAGCCACCTAGTAGGAATGCATCTAAAATTTCTGCAAAAATTC CTCCTCAGCAAGTGCCTAACTTCACTGAAAAAATTCCTCCTCAGCAAGTGCCTAACTTCACTGAAAAAGTTCCTCCTCAG CAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACTTGTTGGATATGGAGTTATCAAGCTTTGATTCCCCTGATAA ATATGCTCAGAAGGACTCTCTGCAGTTTGGAGAGCTAGAATGGCTTGCAGATGATGGTCTTTTTGGTGACCAATTTTCTC AGGAAGCATTGGCTGCAGCCGAAGTCCCTCAGCTTCCAGCAACTTATACCAGCAGCAATGTTGCTTCCTACCGAACCTCC AAATCCCCCATGTCAAACAAAAAGGCTAGGATTGAAGTCCTACATTATGATGAAGATGATGATGAGTACTTCACTGTGCC TAATCTTGGCTGA
Protein sequence (LotjaGi3g1v0032800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIQCDACEKAPATVICCADEAALCAQCDVEIHAANKLASKHQRLLLESLSNKLPKCDICQEKTAFIFCVEDRALFCQDC DEPIHAPGSISANHQRFLATGIKVAGSSKCTKDDEKSHLEPPSRNASKISAKIPPQQVPNFTEKIPPQQVPNFTEKVPPQ QVPNFTSSWAVDDLLDMELSSFDSPDKYAQKDSLQFGELEWLADDGLFGDQFSQEALAAAEVPQLPATYTSSNVASYRTS KSPMSNKKARIEVLHYDEDDDEYFTVPNLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 92 | 92 | 6.0E-7 | – | |
PANTHER | 1 | 270 | 270 | 1.8E-97 | – | |
ProSiteProfiles | 1 | 47 | 47 | 9.414 | ||
PANTHER | 1 | 270 | 270 | 1.8E-97 | – | |
CDD | 3 | 47 | 45 | 6.26891E-8 | ||
Pfam | 4 | 44 | 41 | 8.7E-6 | ||
SMART | 4 | 47 | 44 | 2.6E-10 | ||
ProSiteProfiles | 52 | 99 | 48 | 9.015 | ||
SMART | 52 | 99 | 48 | 1.9E-13 | ||
Pfam | 52 | 95 | 44 | 8.4E-8 | ||
CDD | 55 | 98 | 44 | 6.3168E-9 | ||
MobiDBLite | 108 | 128 | 21 | - | – | |
MobiDBLite | 108 | 122 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0032800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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