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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0035000 |
Transcript ID | LotjaGi3g1v0035000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin responsive SAUR protein; TAIR: AT3G12955.1 SAUR-like auxin-responsive protein family; Swiss-Prot: sp|Q9SGU2|SAU71_ARATH Auxin-responsive protein SAUR71; TrEMBL-Plants: tr|C6T5U1|C6T5U1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0035000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3721065..3722305) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAGCTCTTCCTTTCTGGGTGGCATGGGCATGAGTAGTGGGGTTCAAGTCCTTGGCCAGAATCAAATTGGTTCAGAG AAACAATGGGCTCTCTACTTGAATGCCTGACCTGGTCAGTGATGAGTGACAAGAGCAATTCAGTTTGTGTCTGCAGTCTG TCTGTTGTGAGTGTAAGTTAAAACCACTCTGCCCTCAAATGTATCATCCAAAAGATGACTTGTTTGTGTCACTAAAAATG TTTGGTTGCAAATTGACCCCACACTTCTAGCACCGGAAAACAATGACTTTGCACCCACCTCACCTCTCTCACTCTCTTTA AAAGTACCTTAACACTTTTTCTGAGTGTATTTTAAGCCTCTTTCTCCTCTCTTTTCATTTTCTTATTCATTGGTTTTTCC TCTCTCTGATCCTTTCCTTCCCTGAATCTCAACCCCAAAAAACAAGAAAGAAAAAGCATGAAGAAGATCAATCTATTACT GAGAAAGTGCAAGAGCTTGTCAAGGCAACTTGGAAGATCTTCATCATATAGTAGCTTGAGGTCCAAATCTACCAAGGAAG ACTTGTGGGCAGGACATGGCATAATGCAAGAAGATGAACATTGTGAAACAATATTTGTTGGGAGCACAAGGAAACGGTAT GTGATCAGCTCCAAGTACCTGAATCACCCTCTTCTAAATGCTCTGATCAACAAGTCAAAGCAAAATGATAGTGATGAAAA TGTTTTGGTGGTCAACTGTGAGGTGGTTCTCTTTGATCATCTATTGTGGATGCTAGAAAATGCAGATCCTAAGCTTGGTT CTGAGTCTTTGGAGGAATTGGCTGAACTCTATGTGTTTTAAGAGTTGTCAAAGTGTAGATTTCAGATACCAAATTTATCT TGCAAAATGTAATGATTGAGAGTCCTTTTTGTTTTCTTGTACAATGACTTTATATCTATGGTGCATTAAATGGTCATAGC TGAATTATGTTCTAACTCACTGAGTTTTCAAGAGCCATATGCTTGATTAAGGCCATTAACTTGTTTCTTTGGGAAATGGG CATGTGCAGATGGCTTTCTTAGAGTTCAATTCAACTCCTTTTGTTTTAGTTTGGTGATTATTTTATAATGTTGACGTTTG TAATGATGACTTTAAATTTAAAATTTGGCATAAATTATATCTCATCTCGCTGTTCCTTCTTCATTTAGTTATCAACATGA ATCCCACTAAGTATTTTATAATGCTGATGTTTGTAATGCAC
CDS sequence (LotjaGi3g1v0035000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGATCAATCTATTACTGAGAAAGTGCAAGAGCTTGTCAAGGCAACTTGGAAGATCTTCATCATATAGTAGCTT GAGGTCCAAATCTACCAAGGAAGACTTGTGGGCAGGACATGGCATAATGCAAGAAGATGAACATTGTGAAACAATATTTG TTGGGAGCACAAGGAAACGGTATGTGATCAGCTCCAAGTACCTGAATCACCCTCTTCTAAATGCTCTGATCAACAAGTCA AAGCAAAATGATAGTGATGAAAATGTTTTGGTGGTCAACTGTGAGGTGGTTCTCTTTGATCATCTATTGTGGATGCTAGA AAATGCAGATCCTAAGCTTGGTTCTGAGTCTTTGGAGGAATTGGCTGAACTCTATGTGTTTTAA
Protein sequence (LotjaGi3g1v0035000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTKEDLWAGHGIMQEDEHCETIFVGSTRKRYVISSKYLNHPLLNALINKS KQNDSDENVLVVNCEVVLFDHLLWMLENADPKLGSESLEELAELYVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
PANTHER | 5 | 118 | 114 | 2.0E-39 | – | |
PANTHER | 5 | 118 | 114 | 2.0E-39 | – | |
Pfam | 35 | 106 | 72 | 2.9E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Response to auxin | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. |
Expression pattern of LotjaGi3g1v0035000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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