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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035900 |
| Transcript ID | LotjaGi3g1v0035900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PH-response transcription factor pacC/RIM101 isoform 2; TAIR: AT1G16520.1 interactor of constitutive active ROPs protein; Swiss-Prot: sp|Q93W28|Y4554_ARATH Uncharacterized protein At4g15545; TrEMBL-Plants: tr|A0A151QXB5|A0A151QXB5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0035900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3878636..3884699) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTTTCTTAAATTTAATTTTATCCATGTACACAATACATTTTCAAATATTTTGTGGAAGTGTTTTTTGTGAGTCTG GTTTCACACTTCGCTCAACATAAATTTAAAGACAAAAATCCTAACACGTAAATGAAAAATCATCAATGTGGAGTGTTGAG GAAAATGTGAATATGGGCACACTCCAACCCTTACACAAACATACATGTAATACAAAGACTAACATATTGCATCTTGTAAT GTGACCGCTTCGACTCTTCAGATCGTTCTGGTCCTTAATAGTGGGTAAGAGATCCTCTGCCGATCTGTGAATGTTTGTTC CATATCTTGCACCGGTAGGAGATAAGAGACGAGCTTTTGCGAGGCTTCAAACCCTAACCATCAAACGATAAAGTATAATA TACATCAATAAACTCATAGATAAATAAAATAAAAATAAAAAATTCCCTAGCTCTAAACAATTGTTGAAAATGGTCTGGTT CTTACAAACAACAACATTTGTTTATTTGTCTCCTTTGTTCTCCCAGACAGCTCTCTCTCTCTCTGTCTGTCTACAACACA GATAGCCAACACCACCCACTCTCTTCCTCCATTCTTCCCTCTCCATCATCACTGACTGGAGAGTGGTGGTGGTGGTGGTG GAAGAACCTATCAAATCCACAATCATCATGTCTCAGGGTTCAGGAAATGGCGTCGATTTCGACCTCCCCGACGAGATTCT CTCGGTTATTCCGACCGACCCGTATCAGCAGCTGGATCTCGCTCGCAAGATTACCTCCATGGCCATCGCTTCCCGTGTCT CCTCTCTTGAGTCCGACACCACGCGCCTCCGCCAGAAGCTCCTTGAGAAGGACCGCCTCATCGTCGACCTTGAGGACCGT GTCTCCTCCCTCACCCGCGCCTCTCACAACGCTCACTCCGCCCTCAACACTGCCATAGAAGAAAATGTTCGTCCAATTCC ATCTTTTCAATTTGGTTTAGAGTGAACTCTCATTTATTTGTTTTCACAAATTATAGATTTTTAAAAAAATAAGTGAGAGT ATGTAAGCTACACTATGTGTACACAACAATGGTAAATGAAAATTGCAACAAATGCAAGAAAGGTTAATGTGGTAAAATTA ACTGTGTTATTTGGCAGAAATCATAGGGTAGTGGTGATAACTATCACTTTTTAGTGTTTTTCATGTGTATATTGTTGAAG ATTTAAGTGTGAGTTGGAGTTCTACATTGGTTAAGAATGGGTGAGGTGAGGATAATATAAGAGAAGTGACCCATTAAACC CATTGGCTTAAGGGTTTTAAATGTGGTGTCCGATTCTCTTGGTGTCTTTACTCTTGGCCCGTTGGTGCTTTGAGCTGCCC TTGACTCCCTAACCCCAACACGTGGTATTAGAGCTGATGGTTGGTGTGGCCATTGTGACAGGCAACTTCTGCTGGGGGGG GGGGGGGGGAGGAGTATGATTATGTGGTGGTGGCTCATACTTGATAAATTATATATCCTAGTGTTTGAATAATGAATAGG GCTAGGTAAGAGTTAAAGAGACTTATTTATGTTGAAGAGTGGGACTTTTTTTAAATTCTTTGTGCGGATTGATAAGAAGG AAGATGATATTGTATTTTACTTTGTGGTTGTAGGTAAAGCTTTCCAAGGAGAGGGATGAATTAGCAGCAACAGTGAAGAA GCTAAGTCGAGACTTTGCAAAGGTGAATATTTGTTTTGTTTCTTTATCCTGTCTTGCGTTTTGATTTATTTGCAATGTTT CTGTCTGTCTTTAGTTACTTTGTGCTTGAGCTCTGCCCAGTTTACTATCACTTCCTATGTTCTACTTTTTGAAGATTGTT AAAACTTAAATGTTGTCCGACACATGTTACATGTTATCAATCATAAAAGATATTACCCCAATTCATGGTTGTGGTAATAT CTGCTTCAATGGTTTATTTAAATGGTACCATTACTTGGTGTATGCCTCAAAGTAAGATATTGCAACTTTTGGATCACAAT GGAGTTTGTTTTGATGTGCATAAAAGTGAACAACTATTGATGTCGCTTACTGATAGGCCGTGATTTCAGTTTAATGATTC ATATCCTTGACCACTTCATATTCTACTGGTAGAGCCTTGAAATATGTTGGTTGGTAATGTAAAACATGCCCAAAGCCGTT TGTTTTGATCACAATGGAGTTTGTTTTGATTTGTCCAGTGTGCACATCTTTTATGGGGGTAAATTACACTCCTCCCCTAA GAGATGCTCAAATTATGCAACCATCTCAACTCTATTTTTAAAAATTACACTGACAACATTTGAGATATGTAATGTGTTAA ACTTTGATTTCTTTTAATGTAAAAGAACCTCTTAGCCATGGTGAACGACTATGAACAAGCCTCCTGACATCATTTGTCCT CTCTTTACAACTTTCAGTATCACCAGCAATTTATTTTGAACACCCTATTATATTAGGACTTAAGAAGATGAAACCTAGTT TTTGATACCCTTACTGTAGGTTTGCAACGTCACTTAAAACCTTCATTTCATGTTTTTAAGTCCCAACTCAACAATAAGGG TTCAAAGCTAGTTGTTAATGATGTTGAGAGCCACACAAGAGAAAGATTGCCCTTACTACTCATTCACATTAAATTAGATG AAGGTGTAGCACATACTATTCTCTGAGGGGAGGGAATATAATTTTACAAACTAAAAGAGAAAGTGTCATTTAACCATTTC TCGGGGAAGAATAGAGTAATTTATCCTTACTTTATTCACTAGTGGGATTAATATATCTTTTTTCTTTACTTCTATGATTT TGAACTCATGCAACAATTGACATATATGTGCCTGTGTTTGTACTTTGTACAAATTTTTCCTTTATTTTATTTTATTGCAT GCATTTTTTTCCTTGCATATGTACACATGACGCTTATGAGAGTGAAATACTATTACTTTTTTTTATCTCTTCTCTCCCAA ATTTCTGTATACCTGACAACTTTTCTTTTTTCCTATTTTTTGATAGTTGGAGACATTTAAAAAACAACTGATGCAGTCGC TAGCTGATGACAATCCATCTGTAAGACATCAATATATTAACTTAACCATACTTATTATAATTGCAATTGATTTTGTTGCT GAAAATGACCAGTACTATTCTCCTAAACGAGTTTTCCCCCTTTATTGTTTTTCATTTCTCTCGGGATTGGGACAGCAAGC TGAAACTGTAGATATCCGAACCTGTGACCAGTCAGTTCCAAAGGCATATCCTGATAAGGGTACCTCCCCTCTCATTGATT ATTTGATTATCATTTTCACATATAGCCTTTCTGCTGAAATGATATTTCATAAATGTACTTGTTAAAATTGTTTATATCCA TTTTTTATATGCATTGCCCACAGATGATGATGGGAGTGGATATACGACTCATCATTCATACAGTGGCCCTGCAGATGTGG GTAAAACAATTGATGAAGGTAGATGAATTTCCTGGTGTATCATTGATTGTAGATTAAAATCATGCTATTTACTGTTGTTG TTAATTTTCCTAGAATTCAACTATATTCCTGGATACAAGTCTTATCCTGCATAAGAAATAATGTAAAAAGCTAAAATTAA TCCTTACTATTTAGCATTCTGGAAATGAATTCTATTATCTATCATCCTTTGATCCTACTTTGGTTGCACGCTTGTCTGAA GTTATTGTATAGAGAAAACTGAAAAATATTGTATTTCATCAAACCAAAAATGGAGAAGCAGGGTATTTCGCTGGAAAGTA ATAAGTGTATGGATTTTTCTATTGGACATAATTTAATCTGACTGGAAAAAACTATTCAACAATGGATACAATAAAAGTAT AGCTGGAAGTCTGGAACCATGTATGAATGAGGAAAATTGGCCTTTCAGATATTTTAACTTTTAATTATGACATGCATATT CATTGCCTTTTATTTACTTTTTCTCTTTGATCCTATAGCAACCAAGTATTCAGGGCAAAGGTTTTCTATGACCCCATTTA TCACACCACGTCTTACCCCAACTGGAACTCCAAAAGTGATCTCAACGGCTGGGTCTCCAAGAGGATATTCTGCTGCTGGA TCACCCAAAACTTCTGGGGCCACCTCTCCCACAAAACTTCCATATGATGGACGGTCATCTCTCTCATGGTATTCATCAAG TCAGCAGTCATCGGCTGCAAACTCTCCGCCTCGGGGACGATCAATTCCAGGTTCAAAAGAGTCATTGTTAATCTGCATAC AATTTTTTCTCCCCTCTTCATCTACTAAGATAGATCCTGGATGTTTTTCAAGCTTCTTTGCTCCTAGTCCTTGTATTTTA CTGTAATTCTTGATTGGAATGTTATGTACATTATGCTGCTGATTAGGGTATTATTCTATATGAACCATGTGGCATAAAGG GGGGGGGGGGGGCACATCTTCAATGTGTTCCATTCTTACATTATTTTCAGTTGATTATTCTTCATAACTTCTAAAAATAT TTTTAGGTCGTACTCCAAAGATTGATGGAAAGGAATTTTTTCGTCAAGCCAGGTAACTTTCTTTCTCTCTGCTGTCGTTA AGTGACTTTTTACTTCAGTTTATATAAGAAGCTAAGAAAATGGATTACATGTATCACTTATTTTCAGGAGTCGCCTTTCA TATGAGCAGTTCAGTGCGTTCCTTGCTAACATCAAGGAATTAAATGCTCAAAAGCAAACGCGAGAGGTAAGTAAATATTG AATAGTCAGAAGCATTGGATCTTAAACTGAAACTTTTTCCAATTAGTAGATAATCGTTCAACATTTTCTGTATTCTTTTA GGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTTTACCTATCTTTTCAAGGATTGCTTAACC GGAATGTACGCTAGTTCTGAAAGCAGTGTTTCCTGGAATTGTATGAGTTGGTATGCAAATCCTTTGGTCACCGTATCTCT CTTTGTTGCTCTGTCTCTGCACATTTTTTTTATTGGATTGTGGATGAAGTTGCAGCTTTTTGGCATGCTATCAACAAGCT TTCATTTATAGCCTTAAAAAACCTGACATCATGTTATTAGCTATTCTGCTATTTGCTGCCTTCCATTTTGAGGATTTGAT AAAAAGATCTTGGTCTTATTCCATGCTGTCACTTTAGTCAGACTATCCCACATTTTGAATTTTAGGCTTTATAAATTATA AGTAGGGATTGGGTGCAATGCTAATATTTAGTGTAGGGGGAAGTGGGCTTCATTGGCCCATTAAGCTATAGTGATAGAAG CCCTACTTAAAAAAAAAACTTCATATCCAATAATTTGATATTATTTTTGTATGGGTACTGAGAAATCCTAGCAGTAAGTT GTTTCTTTGTTTTTTCAAATAGTTGCCTTCAGCATATTAGTATGAAACAATTTTGATTAGTGATTACAACTATAGATAAT TTCATATATTTTTGTTTAATTGACTATTACAGTGATTAATTGTTTTTTAATTGACTATTTTTCAGGTTACTAACCCAACT CATCTTTCTTGGACTGATGATTTGACTCATTCCTCTTTGATCCATTGGATCAAAATCCATTTTAAGCCCTGATATGAGCC ATTGAATTTGAGAATATATACTGGCTTTTTTCCTCTTAATCTTTTTTTATTCCCTGTTGCATGCTGTGTGTATAGAAACT CATTATTTTCTGAATGACATGCCCAACAAGCTAAAATGCTGATTGAATTTCGGAAGATTATGGTTTCTTGTACTAGTGTC AGGTGTGTAATGGGAACCTTTTTTAGATGAATTTGACAACTCTCTGTTGTCTGTGATGTGCAGTCAGAGAAATGGTCTGA ATGTTTAGTGGCAATGGCGGTTGGTGCAAAAACTAAGTTATGTCCAAGTGAAAACAAAATTCTAAATACAGTTTAAAGTT CTATGCTTAGGAAGTAATACCATATAAATTAGACACTGGATGAGGTTTTTACATATTGATGATCTTGCTAGTTAAAGAAT CCAGATTCCTTTGTTTTGAGAACCCAAAATCGCAAGATTTGTGGGTGCACCTTCCACCTTGAAG
CDS sequence (LotjaGi3g1v0035900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAGGGTTCAGGAAATGGCGTCGATTTCGACCTCCCCGACGAGATTCTCTCGGTTATTCCGACCGACCCGTATCA GCAGCTGGATCTCGCTCGCAAGATTACCTCCATGGCCATCGCTTCCCGTGTCTCCTCTCTTGAGTCCGACACCACGCGCC TCCGCCAGAAGCTCCTTGAGAAGGACCGCCTCATCGTCGACCTTGAGGACCGTGTCTCCTCCCTCACCCGCGCCTCTCAC AACGCTCACTCCGCCCTCAACACTGCCATAGAAGAAAATGTAAAGCTTTCCAAGGAGAGGGATGAATTAGCAGCAACAGT GAAGAAGCTAAGTCGAGACTTTGCAAAGTTGGAGACATTTAAAAAACAACTGATGCAGTCGCTAGCTGATGACAATCCAT CTCAAGCTGAAACTGTAGATATCCGAACCTGTGACCAGTCAGTTCCAAAGGCATATCCTGATAAGGATGATGATGGGAGT GGATATACGACTCATCATTCATACAGTGGCCCTGCAGATGTGGGTAAAACAATTGATGAAGCAACCAAGTATTCAGGGCA AAGGTTTTCTATGACCCCATTTATCACACCACGTCTTACCCCAACTGGAACTCCAAAAGTGATCTCAACGGCTGGGTCTC CAAGAGGATATTCTGCTGCTGGATCACCCAAAACTTCTGGGGCCACCTCTCCCACAAAACTTCCATATGATGGACGGTCA TCTCTCTCATGGTATTCATCAAGTCAGCAGTCATCGGCTGCAAACTCTCCGCCTCGGGGACGATCAATTCCAGGTCGTAC TCCAAAGATTGATGGAAAGGAATTTTTTCGTCAAGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCGTTCCTTGCTA ACATCAAGGAATTAAATGCTCAAAAGCAAACGCGAGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAAC AAAGATCTTTACCTATCTTTTCAAGGATTGCTTAACCGGAATGTACGCTAG
Protein sequence (LotjaGi3g1v0035900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQGSGNGVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDTTRLRQKLLEKDRLIVDLEDRVSSLTRASH NAHSALNTAIEENVKLSKERDELAATVKKLSRDFAKLETFKKQLMQSLADDNPSQAETVDIRTCDQSVPKAYPDKDDDGS GYTTHHSYSGPADVGKTIDEATKYSGQRFSMTPFITPRLTPTGTPKVISTAGSPRGYSAAGSPKTSGATSPTKLPYDGRS SLSWYSSSQQSSAANSPPRGRSIPGRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDN KDLYLSFQGLLNRNVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 335 | 330 | 8.9E-146 | – | |
| PANTHER | 6 | 335 | 330 | 8.9E-146 | ||
| Coils | 86 | 113 | 28 | - | – | |
| MobiDBLite | 128 | 176 | 49 | - | – | |
| MobiDBLite | 128 | 142 | 15 | - | – | |
| MobiDBLite | 192 | 258 | 67 | - | – | |
| MobiDBLite | 192 | 272 | 81 | - | – | |
| Coils | 295 | 315 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0035900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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