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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0050200 |
Transcript ID | LotjaGi3g1v0050200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger protein; TAIR: AT3G60520.1 zinc ion-binding protein; Swiss-Prot: sp|Q6ZV73|FGD6_HUMAN FYVE, RhoGEF and PH domain-containing protein 6; TrEMBL-Plants: tr|I3S2U1|I3S2U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0050200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5238239..5240162) extracted from Lotus japonicus Gifu genome v1.2.
CACCGACTCAAACCAACTCTTCCTTTCTTTTCTCTCAATATATAAACTCTCTCACTCCCATCCCCTCTCTCTCTTAATTT CTTTCATCTCCAAGCGGCGAAGTTTCACTCCCATCTTCTAATCAATTCATCACATATCTCACTGCTCTCTTGATTTCAAG CTAGCTATGGTGGATCTTCAAACTGTTTGCTGCATGTGCGGCGATATTGGTTTCCCTGACAAACTTTTCCGCTGCAATAA GTGCCGCCACCGATTCCAACACTCGTAAGTATACATATGCTTTCCTTAATCATCATCATCATCATCATCATTCATTCTGG CATAACATCTTACATGATGTACACACATGCATACATCATCACCGATCTTCCTTTATCATAATAGAATAATATTGATGGAT ACATATAACTACATCCATCCATCTTTCGGTGATTCCCATCTCATTAATTAAAACATCAAGGTATGTGTCCTATCATGCTA TGATCAATGATCCATATATACACAACACATGCCATGCATATAGACAATGTTAGTCCAAAATTTCTTTTATATATACATTA TTCAATTATTTCATGTTACATATCTTTCATTAATGTCGCTACTTCTTTAGAAAACAGTTACATGTTTCTCCTAATAAATG TTTTTCTTATGATTCAAACTTGTGTGTTCTTCATTCTTACGGGGTCACAAGTTTACATATATATGTTAATCAATTACGCG ATTTATTATTTTAATAATAAATTTAATTTTTAACGTGTTTTAATTTTTTTTATTAATTGTGATTTTGATGCTATTATCTT AGAGGTAAATCGAATTGTGCTTAATTAAAGTAGAATTTATCTTTAATTTCAGGTATTGCAGTAACTTCTATGGGGAATTA GCTGAGATAGGACAGTGCGATTGGTGCCAAAGCGAGGTGAAAAATTCAACAAATGTTGTTGTTGGCTCGAATTCCAAGAA ACCGGTGCTCGTCGCCGTGACTGGAATAACTAACCGTTCTGAATTTGCCGGTGAGAGAATCAAACAGCATGACGTCTCAG AGAAGGGGAAGAGCCCAACTCCTTCGCCCCGGAGTACACGCAGGTACAAGCTTCTCAAGGATGTCATGTGTTAAAAAAGA GTGGAAAAAACCCATCATGCCATTAGTTAGTATTAGCTAGCTAGCTAGGTGTATTTTGTTTTGAAGTGTGTTATCTTTAT AGTAGCGAAAGAAAACGTAAACAACTCACTCAATAGTAGAGACCATTTTCTAACACTCGACATGATGTCTGAAAATGAGC TGCATTGTTGAGTGGTTTGTGTACGAGAGCTCTTGTAGTAGTAGCTTTGCCAACGTTAATACTAAGTTTACGAGCCTTGT ACTTCTCTTGCTTTAAGTGGCCTTTTCATTTAAGTTGTGAATACAAGAACTATGTAACTTGATGTTACCTATAATCTATG GCTTCAAGTTCCCCACCTTTTTCATTTTCCTAATTGTGATACTTTCTTCAACTAAACTATTTAATTATTAGGTGCATACT TAATTATAAATACAAATCTGCAGATTCTTCATGCCATCCTAACTTTTAAACTCCGCGTGAAATGCATGTACATGAATCGA TATCAGCATCAGATTTGTTAGCAGAATTGATAGAAAGATGATATTATATAATAACCCAAATTTTAGACTCAACGTTTAAA ATATTTTTTTGTAAAAAAGTTTGATAGAATTGACATGAGTAGAATGTTGGGAGACCTGTAGAAACCACTTTTAAGTAGGA GCATATTAGAGGATCTTCTTGAGAAAAAGAAAAATTACCGAGTTAATTGAAATTTTACTAGACACAAAATACAATCACAT TTAGTTCCTAAACAATATTCATATATGGTAATTAATTTGGTCAATTAGTATTAAACAAATTAGTTTTAGGGTCCTTTTTT TTTT
CDS sequence (LotjaGi3g1v0050200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGATCTTCAAACTGTTTGCTGCATGTGCGGCGATATTGGTTTCCCTGACAAACTTTTCCGCTGCAATAAGTGCCG CCACCGATTCCAACACTCGTATTGCAGTAACTTCTATGGGGAATTAGCTGAGATAGGACAGTGCGATTGGTGCCAAAGCG AGGTGAAAAATTCAACAAATGTTGTTGTTGGCTCGAATTCCAAGAAACCGGTGCTCGTCGCCGTGACTGGAATAACTAAC CGTTCTGAATTTGCCGGTGAGAGAATCAAACAGCATGACGTCTCAGAGAAGGGGAAGAGCCCAACTCCTTCGCCCCGGAG TACACGCAGGTACAAGCTTCTCAAGGATGTCATGTGTTAA
Protein sequence (LotjaGi3g1v0050200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDLQTVCCMCGDIGFPDKLFRCNKCRHRFQHSYCSNFYGELAEIGQCDWCQSEVKNSTNVVVGSNSKKPVLVAVTGITN RSEFAGERIKQHDVSEKGKSPTPSPRSTRRYKLLKDVMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 119 | 119 | 1.6E-58 | – | |
PANTHER | 1 | 119 | 119 | 1.6E-58 | – | |
MobiDBLite | 88 | 108 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0050200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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