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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0052000 |
| Transcript ID | LotjaGi3g1v0052000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP binding protein, putative; TAIR: AT3G08670.1 serine/arginine repetitive matrix-like protein; Swiss-Prot: sp|Q03386|GNDS_RAT Ral guanine nucleotide dissociation stimulator; TrEMBL-Plants: tr|V7AMS4|V7AMS4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0052000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5464147..5468676) extracted from Lotus japonicus Gifu genome v1.2.
TGAATCCCCCGACACACTCGGGTCGTGTTTTGTGATTGAAGTACAAATAATAGAATGATTTTGCTTAGCTTTCCATCTAC TGTACTGTACTCTCATTCTCCCAATCCATTCCAAGCTGCAGCATAATTTGCAGTATCCTTCACTATAATACAATACAATA CGTGTGTGTGAATTGGTGTGTGAATTGGCATCATGAACAGAAGGAATGTGAATGAGCACTATCACCGCCAAGGTCACACC TTCTATATGCTCCTAACTTCTAACATTTTCTTATGATCACTCCCTTCAATACCTTATTGCATTGTCATTAAGTTATGGTT ATGGGTTTTGAATCGCGTATGGAAGGGCTTATTTGAGTTTTTTCATTACGTACAAACTATTTCAAGCTTATTTCAATAGG CTTTTCAATTTAGTTTATAAATAAGCACTTATTAGCTGTTACCCAAGTGTACCCTTGAAATTTTTAGTTTCAGTCATATC TGCCCTTTATTAATTAAATTAGGCCATGGAATCTGCAACTTTCTGTTTTGTTTTGGAGGTGATCAAATCAGTGATGTGTT TTCAATGTGTAATTTAGCTTCACTAGTGTGTTTTTATGGATGCAGAATCAGCAAAACTGACCTTTGGGATTGATGATCTA TTGTTATCCACGGAAGGAGGAAAACATGATTATGATTGGTATAATTCTCACTCACTTCTAGTTTATCATATCTTTTGATG TTATTAGTTATTACTCCACTAGATAATGTTCATTTGTGTATCAGTTAAGAAGGTTTAATTGGGCAATTGTTGTACCAATA CGGTTGAGTTGAATCTCTTTCTTAAATTTGCCCTGAAAAATAAAGAATAACATATTAAGAAGACTAGTATTACACCTATT AGAGAAATTGGGAAGGGTGTGCATTCTTAGTTGCTTGGAGGGGGTAGAATCATATTCTTGTACTGTTTATTCTACCAAAT GCAGAATTTTTAATCTCATTTTCCACAATGCTTGATTCCATCATGTATAAGTAAATGAAACTAATTGAAAACAGACGCTT CACTAAAGATTCATATGAACTATTTTAGATTACATCGTTTTAGTGTGTTTACTAAGTTGATAAAAAACACATTCACTCCA ATGACACAAGACACATGAATTGGCAAAAAACAAATTCAAACTTCATTTGGCATATGCGCTGACAGAAATACAAATACACT CTTAGTGGTTGGCTTCATATTTCCTCGCCTTTTGAAGTGATATAGTACAACTTCTAATTGTTTTACTTATAAATTATCAC CAGAAAATAAAATATGGTCCCAGATGACAAATTTTGTCACATGAATAAACTATCATCTCTACTCTATTTGTAAATATTGC TACCCTGTGTCATAGGCTTCTCACTCCCCCGAGGACCCTTGATTTCCCATCATCAAAAGGTAAATCCCAGCAAACTTTGG TACCTCCAACTCCAAGAAGCAGTTTGGGTAGATCAACTTCGAACACAAATATTTCTAAGGTATGTTCATCTAACAATTTC TCATTTCCCTCATACAAGTTCAAGTTATAAGCCTAGTACTGTTGCCCACACTTTTTTAATGCTTGAATTAATATGATCTT CAACCTCTACTGAATGTTTACTAGTGATTTGTTTGATGAGCTATTAGTTATCAGTTCTGAGTGCGGAAGAATTAACAGTT TGGGGAGTCAAGCCACTTCTGTATATGACAATCCACCAGTAATTTTGACAAATTCAACTGCAGTTTTAAATATCTGTTGA GAAGTCTTAGCAACCCTAACCTCTAAGCTAGCTTTTGGAGTAGAGTTAGGACTAGTCCGAATTCTAATATTCTTAGAACT AGGCATAACACAACTTCTAATTAAGATGGTATCAGAGTCTATCCTAAATCTGTTTATTCGAAACCACCTGCATATAAGCC ACTCGCAGATGCAGATTCCACCCTTCAAATGTTCGACTCTGGGCATGATGGGGTGTGTTGAGAAGTCTCACATTGATTAC AGATATGACCAAAAGAGTACTTATAAAGAGTATAACAACCCTCACCCCTACGCTAAATTTTTTAGGGAGAGTTAGACCTA ACCCGAGTTCTAAGAATATCTGTTTACAACTCTCAGATATTAAACTAAGCATACTATACTCAAAAGAACAAAATGGTGCA ACATTTGTTGTAATTCCTCAGATTACCTGCATGGGGGAAATCAATATGAAACCAAAAAGAATCATGTACCAGGAGAAAAT ATTGTCTAGAATTAGTGAACCTGAAAGAGGACTTGTTGGAAAATGTGAGCTAGATGCTGTCTTAATTGATAATCACATAT CTTTCAGGTTTCAGCCTCAAACAATCAATCTAGACCAGCAACAAGAAGCAGTTCAGTGAGCCGGCCTACCATCTCTAGTT CAATGCGCAACACCAATTCTTCAAACAGATCCTCATCCATCCTCAAGAATAGGCCATCTTCCCCCATAATCGGCTCTCCG TCTGCAATAAGATCTTCCACTCCATTGCGACCCTCCATACCCTCCAGAGCACCCTCTCCTGCTGACAAAAGCAGACAATC CAATCCTACTTGCAGGCCTGCAAACTCACATCCCTCATCTTCTCGGTCACCTTCTTGGCCTTCTACTCCCACTCGCCGCC ATTTATTGCCATCTCCATCTCCCACAACAGCTTCCTTATCAACTGGACCATTAAATGGGCGCAATTCGCGACCCCAGCTA CTTGTTGTTCCACCTGATTTTCCCCTTGAAACACCACCAAACCTCAGAACAACATTGCCTAATAGACCTGTCTCTGCAGG GAGGTCTCGTCCCGGTGCTAATTCTGCTACTTTGAAGCCAAATCCTGATACACAAGCCTCAGTTACATCTATGTCAAGGA GAAATGGAAGAGTCCCACAAGGCACTGAGGTAGTTACACGGAAATCTGTTCAGGCTCCAATTTCTGTCACAGACAACAAT GGATTTGGGAGGGCAATCTCAAAGAAATCATTGGATATGGCTCCTAGACAAATGGTTAGTGAGAATTATATACTTCTCCA CTACTGTATAACTAGCAATCAAAGTTCAGAATTCAATGTTCACAGTTATACTATGCCACAACATCAAGTTATTATCTAGT ACTTTGAATTAAAAATAATGCATGGACTAAAAGTTATGTTTTGATTTATCATTCTCTTAATGATCCTGTATAATCTGAAT TATACCTCTATCATCATATTTTGATCATTTCATGATACCTGCCTGTCTTGTAGCATAACATTCTTAGCAAGAGAACAAAG ACCATAATATTTATATTCCCTTTTAATTTAGTCACAAAACTATCACTTTATCTTCACTTTCTTTTCAATTTTCAATTTTT TTTATAGGATATAATGAAAATAAATAAAAGTGGACTGTTTCTTGTACAAAATTTTATGAGTGACACTGCACACACACCTC ATTTTTTTTCTCTAACACTCACTTCTTATCTCATCACGTCATATTACATTCATTACTTCTCTTTCTTTTTTTCCTTTCTC CTTTCGCCCCGTGAGTGTTTACACCCATTAGGTGCATACCCAAAATTTTCCAATTTTAAAATCAGGATACAAACTTGAAA ACAATGTGACAACCTTTAAAGCTGGGAAACAAGGTGGCAACCAAAATATCTCTTGGTTTATACTTGGCTGCTATTGAATA AGAAGGTTGAAGCTAGTTGGTTCTGTCAAATTTACCTAACCTTTTATTTATTAATCAATTTAGGATACAAGGAACAGCTC AGGAACTGTTCGTTCACTTCCAAGTCCCACACTGTTTCCTCAGAGTATTCGAACTTCAACTCCCAAGGCCTTGAGGAGCC TGCAAACCAGAATCAATAGGATTATTGGAAGAGGAAGAGAGATAGATCATGAAAGACAACACTTTGCAAAACTAAGGGAA GTGGATGTGTACTAGAGTTCTCATCATTATGATGCACTATTGCGTAAAGAAGACTGGAGCAACACAAACTGGCTGCATAG TGGTGATGAGAAGTGTGATCAAGGGCACATATTTGATAAGGGATTTGAGTCAGTGCTTGAGCCTTTTGCCCTCTCATAGC ATAATTCCTGGGATGCTCCTTGTCCTAGACAAATTTGTAATAAGGAAATGATTGATGTACTTACAAAATCATGGACATAT TTTCGATATTTCATCTAATGGTGTTAACCGCTAAATGATATGTTGAAGCGCGAAAGTATTTTGCCCGATTTTGTATGTGG GTCTATCATTAATTACTCGGGAGAACCTAATATGCACCACTTTTTAGGTGGTGTAATTTTGCACCACCTACTTTGACTGG GTATAGCAGGTCAATACATTATTTTTTTTAAGAAAAAATATCATTAAAAATTTATCATATATTAAATTTATTTAAAAAAA ATGTGTTGACCTGTTATAGCATGTTAAAAAAAGTGGTCTAAAATTAAACCACTTTGAAAGTGGTCCACATTAGGGGTCAC CTAATTACTCTTTGTAATATGTATTTTATTTTTTTATGTTTCGGAAAGAT
CDS sequence (LotjaGi3g1v0052000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAGAAGGAATGTGAATGAGCACTATCACCGCCAAGAATCAGCAAAACTGACCTTTGGGATTGATGATCTATTGTT ATCCACGGAAGGAGGAAAACATGATTATGATTGGCTTCTCACTCCCCCGAGGACCCTTGATTTCCCATCATCAAAAGGTA AATCCCAGCAAACTTTGGTACCTCCAACTCCAAGAAGCAGTTTGGGTAGATCAACTTCGAACACAAATATTTCTAAGGTT TCAGCCTCAAACAATCAATCTAGACCAGCAACAAGAAGCAGTTCAGTGAGCCGGCCTACCATCTCTAGTTCAATGCGCAA CACCAATTCTTCAAACAGATCCTCATCCATCCTCAAGAATAGGCCATCTTCCCCCATAATCGGCTCTCCGTCTGCAATAA GATCTTCCACTCCATTGCGACCCTCCATACCCTCCAGAGCACCCTCTCCTGCTGACAAAAGCAGACAATCCAATCCTACT TGCAGGCCTGCAAACTCACATCCCTCATCTTCTCGGTCACCTTCTTGGCCTTCTACTCCCACTCGCCGCCATTTATTGCC ATCTCCATCTCCCACAACAGCTTCCTTATCAACTGGACCATTAAATGGGCGCAATTCGCGACCCCAGCTACTTGTTGTTC CACCTGATTTTCCCCTTGAAACACCACCAAACCTCAGAACAACATTGCCTAATAGACCTGTCTCTGCAGGGAGGTCTCGT CCCGGTGCTAATTCTGCTACTTTGAAGCCAAATCCTGATACACAAGCCTCAGTTACATCTATGTCAAGGAGAAATGGAAG AGTCCCACAAGGCACTGAGGTAGTTACACGGAAATCTGTTCAGGCTCCAATTTCTGTCACAGACAACAATGGATTTGGGA GGGCAATCTCAAAGAAATCATTGGATATGGCTCCTAGACAAATGGATACAAGGAACAGCTCAGGAACTGTTCGTTCACTT CCAAGTCCCACACTGTTTCCTCAGAGTATTCGAACTTCAACTCCCAAGGCCTTGAGGAGCCTGCAAACCAGAATCAATAG GATTATTGGAAGAGGAAGAGAGATAGATCATGAAAGACAACACTTTGCAAAACTAAGGGAAGTGGATGTGTACTAG
Protein sequence (LotjaGi3g1v0052000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRRNVNEHYHRQESAKLTFGIDDLLLSTEGGKHDYDWLLTPPRTLDFPSSKGKSQQTLVPPTPRSSLGRSTSNTNISKV SASNNQSRPATRSSSVSRPTISSSMRNTNSSNRSSSILKNRPSSPIIGSPSAIRSSTPLRPSIPSRAPSPADKSRQSNPT CRPANSHPSSSRSPSWPSTPTRRHLLPSPSPTTASLSTGPLNGRNSRPQLLVVPPDFPLETPPNLRTTLPNRPVSAGRSR PGANSATLKPNPDTQASVTSMSRRNGRVPQGTEVVTRKSVQAPISVTDNNGFGRAISKKSLDMAPRQMDTRNSSGTVRSL PSPTLFPQSIRTSTPKALRSLQTRINRIIGRGREIDHERQHFAKLREVDVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 265 | 249 | 9.2E-68 | – | |
| PANTHER | 17 | 265 | 249 | 9.2E-68 | – | |
| MobiDBLite | 47 | 274 | 228 | - | – | |
| MobiDBLite | 48 | 142 | 95 | - | – | |
| MobiDBLite | 149 | 205 | 57 | - | – | |
| MobiDBLite | 224 | 274 | 51 | - | – | |
| PANTHER | 267 | 340 | 74 | 9.2E-68 | – | |
| PANTHER | 267 | 340 | 74 | 9.2E-68 | – | |
| MobiDBLite | 304 | 330 | 27 | - | – | |
| MobiDBLite | 306 | 330 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0052000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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