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LotjaGi3g1v0056000.1

Overview

Field Value
Gene ID LotjaGi3g1v0056000
Transcript ID LotjaGi3g1v0056000.1
Lotus japonicus genome version Gifu v1.2
Description Fbd-associated f-box protein; TAIR: AT1G13570.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570; TrEMBL-Plants: tr|V7AG59|V7AG59_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0056000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:5875460..5880484) extracted from Lotus japonicus Gifu genome v1.2.

CAACTTTCTCCTTGTCAATTCACTTTGTTATAAAAAGAGATAAGACTCATAATTGTGAATTTTCTCTAATATTTCTTACC AAAACAAAGATAAATTTAGTTGAGAAAAGGCCTCCCCTCTGGCCGCAATTCTCTAAAGAGTGACTCGTACTGCTCAGATT GCGACCGATCTTCCGAACCAAGCGTCGGCGTGGCCTCGTTATCCACGCCTCCGATTAGATGAATGGAGGATTGACCGATC CGGGTTCTCGTGAGCATCGGCGGGTCATGGAGCACCAGGTATCTTTTTCCATATATTCTTGTATGTTGTAATTTTCATTT CGTAAAGTTACATACATTTTATGATTTACAAAGCTAGGGGAAGGGGGTAAGAGATTACTCTATTTTCCTGATCAATTCTG AGTATCAAGTATGAATTTGTATTCATTATATGGGTACTCAATTTTACTCCATCCCACTATTTCTTGATCTCTTTGTATGT ACATTTCTAGGAAATGATATAGATTTAAAATATAGCTTGAATTTTTTTCCTAGTCCTTTTTATATCGGCTTTGATTTTGA CTTCTCATCAAATAAGCTTGTTTGACATGGTTGAAACTACACAATCATATTATTTTGTAATTATATTTTTTAACCCTAAG TTGATTTGGTGATGGATCAATTTATTCAAGATCCCGTATAACTCATTTCAAATTGGAGTCTATAGCAGGTTGTTCGCGGA TTGGATTAGATAAAAAAAGACATCTAATCCAATTCCATCAATTTTTAATTTTATTCTCCAATAAATTTGTCTATAAATTC ATCCGGTCTAATATGATCTAATCCCATCCATGGAAGCTTGGACTAGATTAATTTTTTTGATTCAATTAAGTATAACTTGT TTCCTTTGAGCATGTAGTATAATTTTTTTTTTAAAACATATATGTAAATAATCACTTGCAACTCTATTTACGCAAATATA ATTTTATAAATATATATGTGTCATATAATTATATATGTATTTAGTTCAGTAGGATTAGTTGTTGTCGTTGTTTTTTTTTT TAAATCAAATGAGGGCCTTTCCTGGTCGTAGAGTCATAGGGGTTTTGGTTTGGCTTTAAAAGTATTTTATGGAGTTCTTT TAGATATCTTTAAGAGGGTTTTTCTGTAGTGGTTGAGCTTTTGCTATATGTATAAATAATTTTTTTTGAGTTTTATTTTA CTGTTTTTATTGGATTAGATCAGTTATAAACATTTTTAGCCTATTCAAACTTAATTTTCGATGCACAAAAAAATTTAGCA TAAGAATTCGTTTGGTATGTCATATTAGGCATGATAGTATAAGCTTATATTATACATTAAGGACTTACCCATTGTTTGGT GCTAACTTTGTATTGTATAGGCTTACACATCAACCCCCTCTTATACACTAAAATGATGGTTTATTTAATCCACCCTATAG ATAATGGATAAGACATGATAAGAGTGTGATATATAAGCTACATGAAGTATTTAACCACCGCCGCCACCACCACCCTCCAC CACTGCCACCACTATCGCCCTATCCACCACCACCTTCCAGCACTGTCATCATCGTCATTACTGTTATCGCCACTGCCACT GCTGCCACTACCCTCCACCTCCGCCACCACCACTACCATTTCTGCTACCACGATCGCTATTGTCACTACTACCGCCGCCA CACCCACCACCACTACCACCGCCACCTCCATCATCACCATCACCTTCCAACAACAACACCACCACCTCCACCACCCTCGA CCACCATCGTCATGGCCACCACCGCATACTGCCCTGACCCACCACCACCACCACCGTCCAAACCACTTCCCTCCACGTCA CTGTCACCAGCACCTGCACCAGCACCATCACCATCACCTTCCAACACCACCATTGCCGCCCGTCTCCACCATCATTACCA ACACCACGCGAACCACCACTGGTCTACAACATTGCCACCACCACAATACTCTCCACCACCATGACTTCCACCACTCACAT TTGCCATCGATATGCCACCACCACTACCTATCGCCACGACTCACCACCACCACTTCCACCAAAACCACTTCCCTCCACCG CCACCATCACTCAGCATCACCACTGTCACCTCTACAGCCACAATCACTCCATCACCGCCATTGCCGCAACCATCTCGACT GTCATCACCATATTTACCACCCATTAATACCATCCTCATTTTTATAATGTCTACCATTATTTAATATTTCACTATACATA ACTAGGTTTATATTAATTTAAACGAAATGATAAGTTATACAATGTATGATAAAACGTTGTATAGTATCAAATATTTATCA AATGTAATAATATTACTAGACCTTATATTATCAAGCTTTATACTATATAACACATCAAACGAGGTATAAGTAAAGCCACG TGGTCTTGTCTCGAATATGTGGGTTTTGTTTTAGGGGCAATATGTGGGTTAGTCATTCAAGATGTTAATTTAACATGCAT GATTAATAATATAAAGTACATGTATACGATTGATTTCTTATACTCTGTATTGCAAAGTATTTTATTTCCATGCGCATTTT TTATTCTAAACCTTGAGTTTTTTTTGAAATGAAACATTGAGTTAATGCAATTCAATTTAAATTTCTGGAATAGATTTTTG TTCCTTTAAAAAGGTTGATTATTTGAATTATTCGATTTGTTTAACGGTTGGAAACAAATCTCAAATATTCTTTTGAAGCC GTATTTGATGCATGACCCTAGGAAGAACTAAATTATTCTTTAGAGTGAAGAATATAATTTAGATTAGTCTTGTGATGTAA ATCTAGATATTTTCCCCTATACATAAAACATAGAATTTTGTTTTCGTTTCCTTAATTATGTCTATTTTAATGAGTTATGT TAGGGAGAAAATGAAGCCGGGGATGACAATGAAACACAACCACTTGAGATAGAGGAGAAGAAAGACATCATAAGCAACCT GCCTAATGAAATCATTGGGAACATTTTATCTCCTCTGTCAATCAAAGAAGCTGGTATGACCAGCATCCTGTCAAGCAAAT GGAGGTATCAATGGACCAATTTTTTTGGGATCTTGGACTTTGATAGTTCACTTGACACTTTTGAGTTGAGTAGAAAAAAT GCCTTACCTCTGAGAAAATGCAACATTTTTATTTCTAAGTGGGAGAACTTCATGAGAACTTTGGAGCTTGTGATGTCATC AGTAGAAAGTCCATGCTTGAAAGGATTGAGAATTTGCCTCGAGATAGGTTGCCCTGATAAGCTAGTTGAATGGTTCAAGT TTGCAGCTAAGAAGAATGTTCAAATTCTTGATTTGGATTTTTCATCAGTTAACTTCGATACAGAATTTCCCCCATTCAGT GAGACCATTCGCAATGTCTTGCCATTGAATTTTATTGAAAAGATTGAAATGAAATCATTGTGCGTCCTGCGTTTGGCTTC TGTGGATGTGAGTGGTGAGGTTGTTGAGTATTTGTTAAAACATTGTTCATCTCTTGAAACATTGTTTATCAAATCCTCAA AACTCCTTGTGCGCTTGAATGTTTATGGCGAAGCTCTAAGACTGAAACATTTGGAGTTGGTTAATTGTAACATTCTAAAC CTTAGCATCTCTGCTGAAAATCTCATCACATTCATATACTCTGGGAGGTATGGAATTTGTAGATTTGAATATATTCCAAG GCTCATGAAAGCTTCCTTTGGAGGGATGTATGGTAGTTACCTGCATACCAACTTGTGGAATGTGAGTATTTTTGGATTGA TATCCCAGTTAGAAGTTCTGAAATTGGAACTAAAACCATGGGATACGGTAAGTAGTTAAGTACATTACATTTTGGATTGA TATTTTTTTATATGTCATTTTGTTTTATTCATTATTTTCATGTCCATGATCCACACTCTAGGGAATTCTTCTTTATCAGC CTGAGTTCAATAATGTGAGGCATTTGGAGCTGCAAATTCCTCATGAATATGGAGGAGAACTTGATCGTCCTGTTTCTTTG CTAGGTGCATTTCCTTCCATATGTGTGCTTAAGATCAAGGTAAAAATAATCTTTTTTTTTACTTCTATTGCACCATTTAA TTTCGGGATTATGATTTATTCGCACCTCATTTTATCTCTTATCTCATTTCCACACATTTTTCTTTTTATTTCTTTATGTA TTTCTATCACATCACATATGATATCACTTATTTTTCTCAATTTTCTTCACATTTATTAAGGTGGAGCTGGAAAACTAGAG TCAACAACTCATTATAATTTTCGGATTATAATTCCTTCACACATCATTTTCTTTGTCATCTTATTTTCACACATTTTTTT ATTTTATTTCTCTCTGTATTTATGGTAATATCACATATCAAAATACTCATTTTTCTCAATTCTCTTGATATTTATTAAGG TCAACAGCTCATTATAATTTCCTTATGTCTTACTTTGGTCACAATGGTTTTCATCATATTTTATTTGATTCGGCAGTTCT ATAGGTTATCTCTTATGGTAGGGGAGCCAGAACAACAATGGGAAGCCAATCTGCAATGTGAGTTCCCAAACCTGAAAGAG TTGGAAGTGTCAGGATATAAAAAAGACCCAAGTCAACTTGAGTTGCTGATCAAGATATTTGAGAGGGCTCCTAATCTAAA CAAGATTATTGTAGATTCCCTGCATCCATGCCATGCATATAAGTCACCTGCTGTGAAGGCCAAGATTAGACAACTTTCTC ATGATGCTACTATATATTTTGCTGATGGTTTGAAACCATATGTGCCTCCACAAGTTGAATTGGTTGTCCTGTAATGGCAC CAATGGCCATTTAAATTTTGTCATGACAATGAGTTGCATGATTCTTCTGAGACTTCATGATGTTGCGGAAATTTCTAAAG TTTCCTGTGCAATTTTCCCTTTCAGGTTCTTGCTATGATCAAAACATTTTGTGTGATCATGATTCATACTTTTATGTTTG GAACTTTGTTGCTTTAATTTGTCATTTTGGTGGGACTCATAAGAGACCTTGAGATTATGTTAAAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0056000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGGAGGATTGACCGATCCGGGTTCTCGTGAGCATCGGCGGGTCATGGAGCACCAGGGAGAAAATGAAGCCGGGGA TGACAATGAAACACAACCACTTGAGATAGAGGAGAAGAAAGACATCATAAGCAACCTGCCTAATGAAATCATTGGGAACA TTTTATCTCCTCTGTCAATCAAAGAAGCTGGTATGACCAGCATCCTGTCAAGCAAATGGAGGTATCAATGGACCAATTTT TTTGGGATCTTGGACTTTGATAGTTCACTTGACACTTTTGAGTTGAGTAGAAAAAATGCCTTACCTCTGAGAAAATGCAA CATTTTTATTTCTAAGTGGGAGAACTTCATGAGAACTTTGGAGCTTGTGATGTCATCAGTAGAAAGTCCATGCTTGAAAG GATTGAGAATTTGCCTCGAGATAGGTTGCCCTGATAAGCTAGTTGAATGGTTCAAGTTTGCAGCTAAGAAGAATGTTCAA ATTCTTGATTTGGATTTTTCATCAGTTAACTTCGATACAGAATTTCCCCCATTCAGTGAGACCATTCGCAATGTCTTGCC ATTGAATTTTATTGAAAAGATTGAAATGAAATCATTGTGCGTCCTGCGTTTGGCTTCTGTGGATGTGAGTGGTGAGGTTG TTGAGTATTTGTTAAAACATTGTTCATCTCTTGAAACATTGTTTATCAAATCCTCAAAACTCCTTGTGCGCTTGAATGTT TATGGCGAAGCTCTAAGACTGAAACATTTGGAGTTGGTTAATTGTAACATTCTAAACCTTAGCATCTCTGCTGAAAATCT CATCACATTCATATACTCTGGGAGGTATGGAATTTGTAGATTTGAATATATTCCAAGGCTCATGAAAGCTTCCTTTGGAG GGATGTATGGTAGTTACCTGCATACCAACTTGTGGAATGTGAGTATTTTTGGATTGATATCCCAGTTAGAAGTTCTGAAA TTGGAACTAAAACCATGGGATACGGGAATTCTTCTTTATCAGCCTGAGTTCAATAATGTGAGGCATTTGGAGCTGCAAAT TCCTCATGAATATGGAGGAGAACTTGATCGTCCTGTTTCTTTGCTAGGTGCATTTCCTTCCATATGTGTGCTTAAGATCA AGTTCTATAGGTTATCTCTTATGGTAGGGGAGCCAGAACAACAATGGGAAGCCAATCTGCAATGTGAGTTCCCAAACCTG AAAGAGTTGGAAGTGTCAGGATATAAAAAAGACCCAAGTCAACTTGAGTTGCTGATCAAGATATTTGAGAGGGCTCCTAA TCTAAACAAGATTATTGTAGATTCCCTGCATCCATGCCATGCATATAAGTCACCTGCTGTGAAGGCCAAGATTAGACAAC TTTCTCATGATGCTACTATATATTTTGCTGATGGTTTGAAACCATATGTGCCTCCACAAGTTGAATTGGTTGTCCTGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0056000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNGGLTDPGSREHRRVMEHQGENEAGDDNETQPLEIEEKKDIISNLPNEIIGNILSPLSIKEAGMTSILSSKWRYQWTNF FGILDFDSSLDTFELSRKNALPLRKCNIFISKWENFMRTLELVMSSVESPCLKGLRICLEIGCPDKLVEWFKFAAKKNVQ ILDLDFSSVNFDTEFPPFSETIRNVLPLNFIEKIEMKSLCVLRLASVDVSGEVVEYLLKHCSSLETLFIKSSKLLVRLNV YGEALRLKHLELVNCNILNLSISAENLITFIYSGRYGICRFEYIPRLMKASFGGMYGSYLHTNLWNVSIFGLISQLEVLK LELKPWDTGILLYQPEFNNVRHLELQIPHEYGGELDRPVSLLGAFPSICVLKIKFYRLSLMVGEPEQQWEANLQCEFPNL KELEVSGYKKDPSQLELLIKIFERAPNLNKIIVDSLHPCHAYKSPAVKAKIRQLSHDATIYFADGLKPYVPPQVELVVL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 - –
MobiDBLite
mobidb-lite
8 33 26 - –
PANTHER
PTHR31639
38 466 429 1.3E-105 –
PANTHER
PTHR31639:SF121
38 466 429 1.3E-105 –
Gene3D
G3DSA:3.80.10.10
39 321 283 1.8E-13
IPR032675
SUPERFAMILY
SSF81383
39 79 41 1.15E-8
IPR036047
SUPERFAMILY
SSF52047
181 433 253 7.06E-9 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0056000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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