Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0072800 |
| Transcript ID | LotjaGi3g1v0072800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon protein; TAIR: AT2G44600.1 hypothetical protein; Swiss-Prot: sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E; TrEMBL-Plants: tr|I1KJE1|I1KJE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0072800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7955688..7959887) extracted from Lotus japonicus Gifu genome v1.2.
CTCCACATTGGTTAACAAGATTCTTTATTTAATAAAAAGATTTTGTTACTCATTAGTAACCAAAATAGTAGCACATACAA TTTTTTATTTTCATCAACAAACCCATGACTAGAAACAAATTACTGGATTATAACAAATTTACAACTCAATAGGTGCTGTA ATCCAGCCCACAAGTATTCCTATCTTTGACCCTTTCCTCTCTCTTTATCTCTCCCAAACCCATATACTCTTTCTCTCTCC CAATCTCTCTCTCTCTTCCATTGAAATTCTCAAAACAAGAACAAGAACAACAAGACAAACAAACAAACCCTTCTTTCTCC TTCACCTTGAATTCTCCATCAAATCCCTCCCACTTGGTAACACAACACAATCAAACAAAGTGAAAAAGCAACCACCAACA GCGTTTGCACAATTATAAAACAAACAAAACGCTGTCGTATCGTGTATAATCAAATTTCCACAAAGGAATCAATGAGGTGC AAGAAACATTTACCGGACCTCACCAGCACCCTCGGCGTCTGCGCCTCTTGTCTCCGGGAACGCCTCGAACCTCTCGCCGA GGCCCAAGCCCAATCACCCCATCCTGCCACCGGAAAATCTGATCCCAATCATCCTCCGCCGCCGCTCAATCTCCCTCCCT CGGTTTCACCCTATGTTACTCGCCGGAAAAGCGACCGCGACCGCCGCCAGGAGCGGTTATTCCACAGCGTGCCGGAGGTC GGCCAAGGATTCTCCCCAGCGTGCGACGGCGGAGCAGCGGCGGCGGCGTCAAAGAAAAGGATCGGAAGGTTCTGGATCTT GTCAAGCCTTTTCCGTCCAAGATCGAACAAGACAACGGAGGAGGAGGATTCATCTCGTGATTCCTACGAACCTTCTTCAT CAGCGTCTCCTCCGCTGTCATCGTGGTTCTCCACGATCCTCCCTGCTCGCCGCCAGAACGATCAACGGAGTTGCCGCCGG CAATCAGATCGGGGATTATCGCCGGTTGAGACGGTGACGGTTACGCAGACTGAGAGCCCTAAAATCGACGGACGCGACAG ATCTCCACCGGGATGCTCATCGGAATCTTCGCCGCAGCGGCGGCACCAAACGCCGACGGTGGCGCGGCGGTCGCGGTTTT GCCCTGCCGGGAAAAGCTTAACGAACATCGCGTTTTGCTTGAGCCCGTTGGTTCGGGCGAGTCCGAACCGGAGGTGGGGC CATAAGGGGTTGGCTCAGGAACTGAGTGGAGGTTTGGGTGGGCCCCAACATATATCCACTGCGGTTTCTTATTGTGCTAA CCGGTCAAGGAAGCTTGCAGATTTCGGAAGAGTTGCCCACAACCGTTGATCTTGCTGACCTGTGACATGATTGTACGGTG GTAATTTTTCTGTGCATTTATATTTGTGAAGATTTTTAATATTTTTTTTTTACAAATACAAAAGGAACTTCCTTCTTTGA ATTGTCTCTATGTATAGTGCACAAAGTTTATAACAAGGAAGAAATACATTTTTTAGATGAATTTATGTAATGTGTTTGAG TTTGAGATGTTGGTAATTAATTGCAACTAGGCTTAATTGCAATTTTCGTCCCTGATGTTAAGTCTTTGTGCAATTTGAAT CCCCTTTGTTTAAAACGAGCGATTTTAGTCCTAAAACTTTCAATTTGTGCCAATTAAGTCCACTGTTAGTCTACTGTTTA ATTCAAACAGAATTTACATATGTGGCTGCTCATTAATGACGTGGCTTTGACACATTTTGCCACTGAGATGCCACTCAGAC TCCACGTAATAAAAATATAATTAATTAAAATTCTAAAAAATAAAAAATTCATAATTTATTTAACTTTAATCCAATTAAAT CATTCATCCCTAATCATGATCCATCTTCATCTCCAGTGAATCAACAACAAAAATCTGTAAATAAATTTCAGAAGTAACAA CAAATCAAGAAGCTATAGAAATTTCAGAAACAAAAATAAACTTTTCCCCTTCCTTCACCCAAATCCAGAAAACAAAAAAA TATTTCCAGAGAACTAGGGATGGCAATGGGTTTCGGACTTATAGGGTACCCGCAAAAAATACTCATAATGGGTAGGGTAA AAACCCGCTAAATGGATATGAGATTGGGTATGGGTAATTACCCGCAAAAGATAGTGGGTATGGGTGCGGGTATGGGTACT ATAGTACCCAACCCGCCCCATACCCGCACACACATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT TATTTAGTAATATATGAACAAATTAACTTAAGCTATTACTTTCAAACTTACTTATTTTAAAAAATTGATGAGTATTTAAG GTATTCATAATCATTGCTAATTTACTCCCACTTATTTTTAAATTAGTAAGTTAATAACCTACAACTTTAGGACTACATTA TAATCCAAAATTAAAAATTAAAGTTATATCTTTCTTGCTTATTTGTTCTAAAAAGAAATATTCTTAGTTGAATGATTTTA TTTGTTAAGTATTTGCATATCTTTTGTATTTATATTCGTGTTTTTTATTTAAAAAGTTAGTTTTATTTTTTATTTTCTAT TAATAAAGATAGTGAAAAATATATTTTGGTTAGCTAAATTGCGGGTAATGGGTACGGGTACGGGCATATAGGTACCCAGA GGGTACGAGGACGGGCATTCAAGTTGCTACCCACGCGGGTATGAGGACGGGTACGGGTAATTTTTTAAAAACGCGGGTAT GGGGATGGGTACTATAGTACCCTACCCATTGCCATCCCTACAGAGAACAACAAATCTGAACCAACAGATCTTTTTCCATT ACCCATAAACCAACCCCACAAAGCTTTTCCCTTTACCCAGATGGCAACAACCATGAATCACTGCTCCCCTCCATCGTCGC ACGACCTCCGCAGCCAAGTACGCATGAAGTCGCTCTCCTTGTTGTGCATCCAAGATCCTTTCCCTTTTTACCCCATTCTC TCTCTCTCTCTCTTCGATCTGGATATCTCTAGATCTGGAGACGCTAAGACGCACCACAATTCTAGAGAGAACCTGAATCT GGCTTTAATTTCTCTCGAACCTGAATCTGGCTTTGGTGTGCAAAGAAAAAAGAAGTAAGGATTTGGTGCCACTTCTCTTC TCCTATGGTTTTCCTCTGTAAGGATTTGGTGCCCACTTCTATTATCCAATGGTTTTCCTCTCTCATCATTTGGGCCTGAA AAAAGACTCCTTATTAGAACAGTGGCACAGGTCTGGAAATTATAGAGATTTGAGTTTGATTTTTCTGGAGATCAGGTTTT GATCTTTTTTAATTTTGATGAAGATGATGGAATAAGGATAACAAAGATGAAAAATGCAGATGGTAGATGGTAGAAGAGTG ATAAGATTTTTTTTTTTGAAGTTGAGTGATTTGAAATAAAAAAAAATCATTTAGGTATAATTTCATTTTTATTTAATTAC TGATGTGTCATTTTTGGTGGTGTAATTAGCAAAAAGGAATCCTGATAAGAATATTCCGTTTCAAATTTAACGGAGACTAA CGGCCGGACTAAATTGGCACAAATTGAAAGTTTGTTAACTAAAATCACTCGTTTTAAACAAAGGGGATTCAAATTGCACA AAGGCCTAACATCAGGGACGAAAAGTGCAATTAAGCCTTGCAACTACTAACATCATTTAGCAAAATAATTAAGTTTCTTA AAGCATTTAGTTCAGACTTCAGAGTTCGATGCATTATATGTAATCTTAAGGTAATTAGTTTCATGACTACCAGGGTGTCG GGGTTGTTATCATTTTAATTCATTTGATAAATTTGGTGATATATTTTTATATAGCTAGGAGATAAGTAGATTTAATGATT GATGAAAGGGCATTAATTTTTAGTTTACAGACCCCAATATTTGAAAGAAGGGCATTGAAATAAAATAATCAAAGGGCATT GACTCAAAATTTGATTAGTGATGGCAGTGACAGTGAGAATGTGTTGAACTTGAATTTAAGGGAACTTTATATTAGGGGTA AATAGCCAACTTGGTCCCTGAATGTGTCAACCGCCTTCAACTTCGTCCCTGAACTTCTAAAATGCCTCTCGTTGTCCTTG AATGTGGCAAAAGTCATTCACACTAGTCCCTGAGTTAAAAAAAGTAGACGGACGTTAACGGAATGCTGACGTGGATTTTT TTTGTTAAGGCCGAAGCTTATATGGCATTTGAATGTTGAG
CDS sequence (LotjaGi3g1v0072800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTGCAAGAAACATTTACCGGACCTCACCAGCACCCTCGGCGTCTGCGCCTCTTGTCTCCGGGAACGCCTCGAACC TCTCGCCGAGGCCCAAGCCCAATCACCCCATCCTGCCACCGGAAAATCTGATCCCAATCATCCTCCGCCGCCGCTCAATC TCCCTCCCTCGGTTTCACCCTATGTTACTCGCCGGAAAAGCGACCGCGACCGCCGCCAGGAGCGGTTATTCCACAGCGTG CCGGAGGTCGGCCAAGGATTCTCCCCAGCGTGCGACGGCGGAGCAGCGGCGGCGGCGTCAAAGAAAAGGATCGGAAGGTT CTGGATCTTGTCAAGCCTTTTCCGTCCAAGATCGAACAAGACAACGGAGGAGGAGGATTCATCTCGTGATTCCTACGAAC CTTCTTCATCAGCGTCTCCTCCGCTGTCATCGTGGTTCTCCACGATCCTCCCTGCTCGCCGCCAGAACGATCAACGGAGT TGCCGCCGGCAATCAGATCGGGGATTATCGCCGGTTGAGACGGTGACGGTTACGCAGACTGAGAGCCCTAAAATCGACGG ACGCGACAGATCTCCACCGGGATGCTCATCGGAATCTTCGCCGCAGCGGCGGCACCAAACGCCGACGGTGGCGCGGCGGT CGCGGTTTTGCCCTGCCGGGAAAAGCTTAACGAACATCGCGTTTTGCTTGAGCCCGTTGGTTCGGGCGAGTCCGAACCGG AGGTGGGGCCATAAGGGGTTGGCTCAGGAACTGAGTGGAGGTTTGGGTGGGCCCCAACATATATCCACTGCGGTTTCTTA TTGTGCTAACCGGTCAAGGAAGCTTGCAGATTTCGGAAGAGTTGCCCACAACCGTTGA
Protein sequence (LotjaGi3g1v0072800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCKKHLPDLTSTLGVCASCLRERLEPLAEAQAQSPHPATGKSDPNHPPPPLNLPPSVSPYVTRRKSDRDRRQERLFHSV PEVGQGFSPACDGGAAAAASKKRIGRFWILSSLFRPRSNKTTEEEDSSRDSYEPSSSASPPLSSWFSTILPARRQNDQRS CRRQSDRGLSPVETVTVTQTESPKIDGRDRSPPGCSSESSPQRRHQTPTVARRSRFCPAGKSLTNIAFCLSPLVRASPNR RWGHKGLAQELSGGLGGPQHISTAVSYCANRSRKLADFGRVAHNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 1.3E-66 | – | |
| MobiDBLite | 28 | 72 | 45 | - | – | |
| MobiDBLite | 42 | 57 | 16 | - | – | |
| MobiDBLite | 117 | 211 | 95 | - | – | |
| MobiDBLite | 132 | 155 | 24 | - | – | |
| MobiDBLite | 167 | 182 | 16 | - | – | |
| MobiDBLite | 193 | 207 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0072800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…