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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0074100 |
Transcript ID | LotjaGi3g1v0074100.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | nuclear factor 1 A-type protein (DUF1005); TAIR: AT5G17640.1 nuclear factor 1 A-type protein (DUF1005); Swiss-Prot: sp|A5FUG4|MTNB_ACICJ Methylthioribulose-1-phosphate dehydratase; TrEMBL-Plants: tr|I1KJC7|I1KJC7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0074100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8138725..8140861) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCCTCAGGCCTTCATTAGGCTGTCAATAGGCTCTCTGGGGTTGAGATGTACTGGAATCGAACTGAGCACTGGAAA ATCTGGAGTTCACAGATTCTCTTCATCTTATGTTTGTGAGATACGACTTCGAGGTTTTCCTGTTCAAACATCATCTGTCC CCTTGATAACCTCTTCTGAAGTTATACCTGATACTCAGAACATTGCTTCAAGCTTTTACCTTGAAGAATCTGATTTAAAA GCATTGCTTGCTCCTGGTTGTTTCTACAATTCAAATGCTTGTCTGGAGATTGCTGTATTTTCCGGGAGGAAGGGATCCAG TTGTGGAGTCAGCATCAAAAGGCAGCAAATTGGGATTTTCAAAATGCAGGTCGGCCCTGAGTGGGGTCAGGGAAAGCCAT TGATTCTTTTTAATGGGTGGATAGGTATTGGCAAGAACAAACAGGAGAACGGAAAACTGGGTGCAGAGCTACATTTAAAA GTAAAACTAGATCCTGACCCTAGATTTGTATTCCAGTTTGAAGATGTAACGACATTGAGTCCTCAAATAGTTCAACTGCA AGGATCTATCAAGCAGCCAATCTTCAGTTGCAAGTTTAGTAAAGACAGGTGATATGAAGTATTTTACTTCCAATTATGTT GAGTTCTATTGGAATTATTTAAAATCATGACTTATTTTCTCATAAATTAGATCTATGTTTTAAAGTCTTAGTCAATAACA TGTTTCAAAGAACCGTAACTCTCCCAAGTCCCTGCTCCACATATGTTTTTTGAGGTAAATGTGTTTGATACGGATTAGGA TCCTATGTCACATGGCATTTTAATGTAAAACTTTGTTTTTATTTCTCTCTTTATAAATATTTAGAGGGTCTCATTCATTT AAAAGGTATGAAGTGAGAGATATACACAAAATTTCAACATAACACTGTCATGTGAAGTTTCCACAAGAGAGGATCATGAT CCGTTTGATACTAAGTTTGCTGCCTGGTAAAGGTTTTCCCGATTGGTTCATTCATAGAGTTCTACTATACAATTAACTCC TTTCAATTATTAGATTGTAATTTTTAAGAAAAAATAATTTACTTTTATCCTTTACATAACAAATCACATTACTTTTTTCA TATAGAGCTGAAATGTTTCTTCTAGGGACGTAATCAAGTATATTTTTCTGTGCTTTCTAAAGCTAAAACACAAATAACAG AATGCCCTTGTAGACTAATGTAGTTAACCAACCAATGGAAGTTTAAATTATATAAGCCATTTTGTCAGAAGAAGTCCGAG GTCTGATATTTTTTGAACATGGAATTTAATCCTTCTCTCAAATCAATATTTCAAATGCAAAGTGGTAGCTGATTTGTTCA TTGTTTGTGCCAATTGGACCTTATATCTATAATACACAACCTTTTCTAAAAAATTGTTATTAATAAAACTTTTGGTAGTT ATGAAATGACAGGGTTTCCCATATTGACCCGTTGAGCACATACTGGTCAGATTCTATGGACATTTCTGACTTCGAGACTG AGAGGAGAGAGAGAAAGGGGTGGAAGGTGAAGATCCATGACCTATCTGGCTCAGCTGTAGCTGCAGCCTTCATAACAACT CCCTTTGTTCCATCTTCAGGTTGTGATTGGGTTGCCAGATCCAACCCAGGAGCTTGGTTGATTGTTCGTCCCGATGTCGG TAGATCCGAGAGCTGGCAGCCTTGGGGAAAGCTTGAAGCATGGCGTGAGCGTGGCCTCAGAGACTCCGTGTGCTGCAGAT TCCATCTTTTATCTGAAGCTCAGGAAGGAGGTGAACTCCTCATGTCTGAAATACACATAAATGCTGAAAAGGGTGGAGAG TTTTTCATAGACACTGAAAAGCACATGCGAAATGCCGCAGCAAGTCCAGTACCAAGTCCACAAAGTAGTGGAGACTTTGG TGCACTGAGTCCAGTAGTTGGAGGTTTTGTCATGTGCTGCAGAGTTCAAGGCGAGGGGAAGCGGGGCAAGCCATTGGTAC AACTGGCATTGCGACATGTGACGTGTGTGGAGGATGCTGCCATCTTCATGGCGCTTGCAGCTGCTGTTGATCTCAGTATC GAGGCTTGTAGACCTTTTCGTAGGAAGATCAGAAGAGGTAAACAACATTCTATGTGA
CDS sequence (LotjaGi3g1v0074100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTCAGGCCTTCATTAGGCTGTCAATAGGCTCTCTGGGGTTGAGATGTACTGGAATCGAACTGAGCACTGGAAA ATCTGGAGTTCACAGATTCTCTTCATCTTATGTTTGTGAGATACGACTTCGAGGTTTTCCTGTTCAAACATCATCTGTCC CCTTGATAACCTCTTCTGAAGTTATACCTGATACTCAGAACATTGCTTCAAGCTTTTACCTTGAAGAATCTGATTTAAAA GCATTGCTTGCTCCTGGTTGTTTCTACAATTCAAATGCTTGTCTGGAGATTGCTGTATTTTCCGGGAGGAAGGGATCCAG TTGTGGAGTCAGCATCAAAAGGCAGCAAATTGGGATTTTCAAAATGCAGGTCGGCCCTGAGTGGGGTCAGGGAAAGCCAT TGATTCTTTTTAATGGGTGGATAGGTATTGGCAAGAACAAACAGGAGAACGGAAAACTGGGTGCAGAGCTACATTTAAAA GTAAAACTAGATCCTGACCCTAGATTTGTATTCCAGTTTGAAGATGTAACGACATTGAGTCCTCAAATAGTTCAACTGCA AGGATCTATCAAGCAGCCAATCTTCAGTTGCAAGTTTAGTAAAGACAGGGTTTCCCATATTGACCCGTTGAGCACATACT GGTCAGATTCTATGGACATTTCTGACTTCGAGACTGAGAGGAGAGAGAGAAAGGGGTGGAAGGTGAAGATCCATGACCTA TCTGGTTGTGATTGGGTTGCCAGATCCAACCCAGGAGCTTGGTTGATTGTTCGTCCCGATGTCGGTAGATCCGAGAGCTG GCAGCCTTGGGGAAAGCTTGAAGCATGGCGTGAGCGTGGCCTCAGAGACTCCGTGTGCTGCAGATTCCATCTTTTATCTG AAGCTCAGGAAGGAGGTGAACTCCTCATGTCTGAAATACACATAAATGCTGAAAAGGGTGGAGAGTTTTTCATAGACACT GAAAAGCACATGCGAAATGCCGCAGCAAGTCCAGTACCAAGTCCACAAAGTAGTGGAGACTTTGGTGCACTGAGTCCAGT AGTTGGAGGTTTTGTCATGTGCTGCAGAGTTCAAGGCGAGGGGAAGCGGGGCAAGCCATTGGTACAACTGGCATTGCGAC ATGTGACGTGTGTGGAGGATGCTGCCATCTTCATGGCGCTTGCAGCTGCTGTTGATCTCAGTATCGAGGCTTGTAGACCT TTTCGTAGGAAGATCAGAAGAGGTAAACAACATTCTATGTGA
Protein sequence (LotjaGi3g1v0074100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPQAFIRLSIGSLGLRCTGIELSTGKSGVHRFSSSYVCEIRLRGFPVQTSSVPLITSSEVIPDTQNIASSFYLEESDLK ALLAPGCFYNSNACLEIAVFSGRKGSSCGVSIKRQQIGIFKMQVGPEWGQGKPLILFNGWIGIGKNKQENGKLGAELHLK VKLDPDPRFVFQFEDVTTLSPQIVQLQGSIKQPIFSCKFSKDRVSHIDPLSTYWSDSMDISDFETERRERKGWKVKIHDL SGCDWVARSNPGAWLIVRPDVGRSESWQPWGKLEAWRERGLRDSVCCRFHLLSEAQEGGELLMSEIHINAEKGGEFFIDT EKHMRNAAASPVPSPQSSGDFGALSPVVGGFVMCCRVQGEGKRGKPLVQLALRHVTCVEDAAIFMALAAAVDLSIEACRP FRRKIRRGKQHSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 412 | 412 | 6.1E-214 | – | |
Pfam | 1 | 407 | 407 | 5.0E-162 | ||
PANTHER | 1 | 412 | 412 | 6.1E-214 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0074100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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