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LotjaGi3g1v0075300.1

Overview

Field Value
Gene ID LotjaGi3g1v0075300
Transcript ID LotjaGi3g1v0075300.1
Lotus japonicus genome version Gifu v1.2
Description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; TAIR: AT3G03100.1 NADH:ubiquinone oxidoreductase, 17.2kDa subunit; Swiss-Prot: sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; TrEMBL-Plants: tr|I3T3W9|I3T3W9_LOTJA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Found in the gene: LotjaGi3g1v0075300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:8264061..8268097) extracted from Lotus japonicus Gifu genome v1.2.

GTTGAAAGCATGTTTTAATTTCTCATTCCGTATTCCCAAACGCAGCCTTACCAATTCCCCAAACTCGAAGAAGAAGAAGA AGAAGAGAGCGTGGACGCAGAGTGGTGGTGACTGGTGAAGATGGCATCGCTGGTGAAGAGCATTCTCAATTCAGTGAAAG AGAAGGGTTTGGGCGGTTTCCTCAGACACCTCAAGGACGATGGCTTCATGTTCGTCCCTTTCCCTTTCCCTAATTTCTCA ATTCGCTTCGAAATTCCGCTAACATTGCGAAAAATCACGATTGAAAATTTCCTGAATCTGCTTTTGTTTTACGGATCAAC GTTGATTTTGGAGCTGAAATGAGACTCAGACTTGATTTGATTTGATAGCTCTTTGTTAATTTTGAGTTTTTTTGGTTGTT AATGGAATTTTGTGGTGTATTCTTCAGAGAAATGTAATGTGAGCTAGAAATTATTAGGGTTTCCTTTGATTCGATGTTCT GATGTTTTGGTTTTGAATTTTCAGGAGATGCCTTCCAGATGGAAACCTCTTGTAAGTCAATTAATTTGCTTGAGAATTTT CTGCATTTCATTTCTTGGTTTATTATACTGTATACTTTGAATGAAAAATAATGAAAAACAAAACTTTTGTTGATTGGTTA TATATTTGTCTGTGTTTCAGATTTTGGGGTTTTCTTTGCTGTTTTTTTTAAGATGTTTGATAAATTATAGGGTGTAGAGA TGCATAATGGAATAATAGGTACATTGGTAGGAGCCTTTTTCCGATAATTCTAGTGGGAACATGAAAAAAGGATGAGAATG TGCTAACTTTCTTTGTTAGATGGCCCTCTTGGAGTTGGAGATAAATAAGAGAGGCTTTTAGAGGCTCAGTGTGTTAATCA CGGAAATTAGCGGAAAGCCAAAAATCCGCTATTTCGAGCCCTCATAGCGGATAATAGTGGGATAGCGGTGGGCCCTCAGA GCGCTATGCTATAGTACTACACCGCCGCTATAACCGCTATTTGACAACCATGGAGGCTCTTATTGCAATTTGTAGGGTGT AGAGATGCATAATCGAATAATAGGTACAATGGTCGGAGCCTTTTTCTGATAATTCTAGTGGGAACATGAAAAGGACAACA ATGTGCTAACTTTCTTTGTTGGATGGCATCTTGGAGTTGGAGATAAAAAAGAGAAGAGCTTTTAGAGGCTGTTATTGAAA TTTGTAGCAGATATGGACTGTTCTTCTCTAGGTTAAGATAATGTTTGTAGGTCATTGCAATGAGATTTAGATTGAAGTTT CTATGAATTTGGTGAAAGGGCTCAGATTTATATCAACTTCATTTGAACTGTTTGTTAGTATTTTATGGTGAGGGATTTAA ACTCCCAGTGATACCTCTTCCTTTCCTTTCTGAATTTATGCAGGCAAACCAAGATCCACGGTATTGGGGCAAGGCTTGTT GGTGTTGACAAATTTGGCAACAAGTATTACGAGAAAATTGAAAACACAATAAATGGTAAGTGACTTGCTGTTGTGCCTAT CTGTGAGTGTGTATGGTTTAGTGTAATAAATTGCATATGGCTAAAAACAGTGAAAACTTATCCCTTGAGCCCAAGACTAG CTAGCTGAACACCAGTGAAGGTGTTTACTGTGCATTTGGATCAATAACATCCAGCATTCTGATTGCTGCCCATTCCACTA TGACTTGATGAACAAGAAAAGGAAATAGTGAAATGCCATGAATTTTCAAATTCTGCCTCAAAACTGTTTTTGTACTTAGT GGAAATCTACTAAAGGATGATATGTTAGTCTAACATATAAAAATAGTTCATATATATCAAGAGTAAAGTCACGGAGGCCA AAATATCTGTAAAAAAACTGAATTGCAAATTTGCAATCATGAAATGGGAAAAGATTGCGTGTGCACGCGTGATAGGGACA AGAATAATGAAATGGGAAAAAGTAGGGGGTGTGTACACTAGAAAGGAACGAAAAGACAATTATGAGCTAGGAGGGAAGGA GGGAAGCTAGATGATTAGATGGGTTTGTTACGGAAAGAGGTTAAATAGCTAAGTTGTACAGGGGAGATCATCTTTCTAGG GAAATTGTTTTGTACCAAGCTATTTTGTGGGTTAAAGGGGCTGCATTTTGGAGGAGCTCTACTCCTTGACCATATTCATC AATCATAAAAGCCTTTTTTCCTTCTTTCTCCTTCTCTGAAAGCAGAAAGATATTGAAGCTTTGTTCTACTATAAATTCTA TATCACTTTTCAATATTTCTGCATATTGCACAGATCAGACAAGAATAAAATCATAGTAAACTTTTGTGCATTCCCTAAGT GAGGTAAATGAAGATAAAACAATTGTGAGGACTAATGAGGCTTGGTACAATAGTTGGGTATATAATCTTGTCAAATGGAA TGTGGATGTTTTGTATTACACCGTTGAAGTTTGGTCCATTTTCACCTTCACTGCATAAGGTCTGTTTTGTACGACAATGC CCCCCCCCCCCCCCCCCAATGAGAATTATCTAAAATGCTAGCCGGTTTTTCTGTAAACTTCCTCCATTAAATACAATAAA GTTCATGGATGTTGTGTTATAAAAGACAAAAAACTTTGCGCCAAATGGGGGAAAGGGCCAAACTTGAAGGGTGTAATTTG AACTTTACCCTTAAAAATTATTGAAAAAAAACATGAGCTAATTTATTCTATTTTTTCCCCTCTTCTGCCCATTTGTTTGA TTATTTGTCTTTGCTGTGCTGAGTTCGAACATTTTGTTTGCTTATTATGACTTCTACAAACACTAATATGTATTTATGGA TATGGTATTTGATTAGAGCTATCCATCAATGTTATAATGTCAGTTTAGGTTATGCTATCATTTGTTTTAATGTTATGACC CTTCATAATAATCATCTTCTATCTTTGACTTCTCCAAAGCTGGGGATTGCTTTACAAGAAAAAGTGAAGGTTATAGACAT CGATTAGGAAATAACAGTTAAAATTATGATCAAATGCTATAACAAACTATAAAGATATTTAAATCTCAAGTCTCAACCAT TGAATTTTCAAACAATGGCTATAACTCTTCATCATTTGCTCTTAAGTGAATCATTCTCCTTTCGCTCTATCAGTCCTCTA TGGTATATTTACTTGTAAACCAGTCGAGACTCAAATTTCAGTTGAAATTCTATAAACTACAGAGTTTTGACATTATAACA AATTTACAAATATCGTGGTTTTATTAAAATTTGGCAGGAAGGCACAGGTGGGTTGAATATGCGGAGAAGAAGAGATATAA TGCTTCTCAGGTTCCACCTGAATGGCATGGCTGGCTCCACTTCATAACTGATCACACAGGAGATGAGGTAAGTTGGTTTC TTTCCTAATTCCTTCCTTGGTAATGCCACATGCAAAGAAATTCTGAATCCCTGACATAATAATGCAATGAATTTGTTGCA GCTTCTTTTACTGAAACCGAAAAGGTACGGTGTTGAACACAAAGAAAATTTGTCTGGAGAAGGAGAACAGTTTATCTATC ATTCCAAGGGTCATGCCCTTAATCCAGGGCAGAGAAACTGGACCAGGTACCAACCATGGGAGTCCAAGGCCCCTGAACAA TGAATGTTGTGCTGCTTTTAGGCGCTGATGTCTTGGGCGTTTGTTTTTCTTTCCTCCTGAAAATTTGTTAAGCATTCAGT TCATGAGGTGGAAAACAGGCTTTACTTTTTAACAATAAAACGAATTTTTAGCTGCTATAGCAGACAGATTCCCTTTGAAC TGGAAAATTTTCCAATATACTGTCACCAATTGGGATGTATGTGACTTGTTAAAAGGATTTGCCCTTGTTTACAATAATCA TTTGTGTAATCTCTTATTTGTACGAGTATGTGTTGTTTTAATTAAAACTGACTTGAGTAGTTATAGTACTTATCCCAGAC ATTATTTGAAAATTTTACCCAGATTTCTCACTTTTATTTCCTCTTGGTACATAACACTTTTCTTTTCCCTTTTTATATGA GAAGTTATACTTTCTTTCTACTTTTTATGTATGTCAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0075300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCGCTGGTGAAGAGCATTCTCAATTCAGTGAAAGAGAAGGGTTTGGGCGGTTTCCTCAGACACCTCAAGGACGA TGGCTTCATGAGATGCCTTCCAGATGGAAACCTCTTGCAAACCAAGATCCACGGTATTGGGGCAAGGCTTGTTGGTGTTG ACAAATTTGGCAACAAGTATTACGAGAAAATTGAAAACACAATAAATGGAAGGCACAGGTGGGTTGAATATGCGGAGAAG AAGAGATATAATGCTTCTCAGGTTCCACCTGAATGGCATGGCTGGCTCCACTTCATAACTGATCACACAGGAGATGAGCT TCTTTTACTGAAACCGAAAAGGTACGGTGTTGAACACAAAGAAAATTTGTCTGGAGAAGGAGAACAGTTTATCTATCATT CCAAGGGTCATGCCCTTAATCCAGGGCAGAGAAACTGGACCAGGTACCAACCATGGGAGTCCAAGGCCCCTGAACAATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0075300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLVKSILNSVKEKGLGGFLRHLKDDGFMRCLPDGNLLQTKIHGIGARLVGVDKFGNKYYEKIENTINGRHRWVEYAEK KRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHKENLSGEGEQFIYHSKGHALNPGQRNWTRYQPWESKAPEQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12910:SF2
1 155 155 6.7E-48 –
PANTHER
PTHR12910
1 155 155 6.7E-48
IPR007763
Pfam
PF05071
49 152 104 6.0E-27
IPR007763

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008137
Molecular function NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
Subterm of
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0075300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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