Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0077300 |
Transcript ID | LotjaGi3g1v0077300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | 4-hydroxy-tetrahydrodipicolinate reductase; TAIR: AT5G48480.1 Lactoylglutathione lyase / glyoxalase I family protein; Swiss-Prot: sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480; TrEMBL-Plants: tr|A0A151RE55|A0A151RE55_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi3g1v0077300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8528304..8529919) extracted from Lotus japonicus Gifu genome v1.2.
CTACTATTTTTCTCTCTGTCAGTTTCTCTCATTGTATTAGGGTTCTTCTAGTCTCTCTCCATCTCTCTCGTTGTCTCTGC TTCAATGGCTTTGCATAAGATTGAGAACTCTTTCGCACCTACCGTATCATTCTCTGCTGTGAAGCCGCTTTTAAATGTGG AGGCTCCCAAGGCGAACAACGCCATTGCGTTCTACAAAGCCGCGTTCGACGCAAAAGAGGTGGGCCGCATGCTGTGCCCT AAGCGCAAGGCGAATCAAGAGATTCCTCTCATTGTCTTGGCAGAATTGATGATCGGTGGTTTCTCTATTCTGGTCACTGA CTTCGCTCATGACTCTGACAACGCGTGAGTTTTTTTCTCGAATCTTCTAATAAGATCGGATAATAATGCATTGATTTTTT TCCCTTAAAGTTCTGGCCGTTACATTGATGTTTTATTTTCCATTTTTCTTTATTTATTATTTATATTGCATCATTTACCA GTTTTGTTTTTTGTACTTATCTTCCATGAAATTGATGTTATTATTTTATGCATGTTTTGAGGATTTGATGTTTAAGGTGC TTGTTGTGGTACCTTGAGTCAATTCAAGGCGTGGTATCCAAAATGAGTTAAATTAGTTGTAAAAACTTATATATCGGTTA AAAGTTTGATTTTATTAAATCATAGTAATGTAGTATTTCATTGCCAGAGATGTGAAATTTGTTTATTGTGTTTTTTAACC TTTGTTCTTCCGTCAAATATGGTCATGTGACGCGCATCACCATCATCATCATTCGTCTTCACTACCCATCCATTTTTCAT CAAAAAAATGAATCATATGGAATGGAGTTAATTGAAAAGTAAAATAAAATTTGAGAAAATGTAAAATTTACGTTGAACAC CATAGTAATAATCTATTAAATAACTTAATGTCGATATCACACCTAAAAAAAATTATGGATACCATAGAATTTGCCATTGT TTAATATTGTTTCTCAGGTCTAGTGATAGTTATTTTGTCGTGATATGTATTTTGTTTATTTATTCATGATTTTTTTTGTT TACAGTTGAACGTGATTCTATTTTATGGATTTTAAATAAAACTGTACTTTTATTTTGTTTCATGTTTGGATGTTGTTTAA GTAAAAATTCTTTCTTTTCTAAGAAAAAACTAGATTAGATAGTAAAGGTATATTATATTTCTACAAATTTATTTCAATAT AATTTGTTAATGTTGGGTGAATATTCACTAGAAAACGTCACTTTAATTTTCACGTTTGGGTGAATATATTCACATCTTTG GCCTTCTTTTTGTTTTTATCTCAGCCCGAAGACTGGAGGGCTTGGTGTGTTCCTACAGACTGAGGATGTAAGTGCTGCAA TTGCCAAGGCTGTGAACGCTGGAGCAGTAGAGGACGAAGAGTTTGTCGCAGGTGAGGGGGCGATATTTCGTGGTGGGCAT ATGAGAAGGGTCAAGGACCCATACGGCTTTGTTTGGACAATCTACTCCGTTTGAGAATGAAAAGTGGAGTAAGTTCGAGG CTTGTTATGACCATTTAGAAATTTAAAGAATAATGTTTTGAACTATTTGATAGACTAAAATGGGTTCATGATTGAATTTA AAATCTCTCTTGTAAT
CDS sequence (LotjaGi3g1v0077300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGCATAAGATTGAGAACTCTTTCGCACCTACCGTATCATTCTCTGCTGTGAAGCCGCTTTTAAATGTGGAGGC TCCCAAGGCGAACAACGCCATTGCGTTCTACAAAGCCGCGTTCGACGCAAAAGAGGTGGGCCGCATGCTGTGCCCTAAGC GCAAGGCGAATCAAGAGATTCCTCTCATTGTCTTGGCAGAATTGATGATCGGTGGTTTCTCTATTCTGGTCACTGACTTC GCTCATGACTCTGACAACGCCCCGAAGACTGGAGGGCTTGGTGTGTTCCTACAGACTGAGGATGTAAGTGCTGCAATTGC CAAGGCTGTGAACGCTGGAGCAGTAGAGGACGAAGAGTTTGTCGCAGGTGAGGGGGCGATATTTCGTGGTGGGCATATGA GAAGGGTCAAGGACCCATACGGCTTTGTTTGGACAATCTACTCCGTTTGA
Protein sequence (LotjaGi3g1v0077300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALHKIENSFAPTVSFSAVKPLLNVEAPKANNAIAFYKAAFDAKEVGRMLCPKRKANQEIPLIVLAELMIGGFSILVTDF AHDSDNAPKTGGLGVFLQTEDVSAAIAKAVNAGAVEDEEFVAGEGAIFRGGHMRRVKDPYGFVWTIYSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 11 | 148 | 138 | 1.2E-42 | – | |
PANTHER | 11 | 148 | 138 | 1.2E-42 | – | |
Gene3D | 15 | 149 | 135 | 2.6E-39 | ||
SUPERFAMILY | 21 | 147 | 127 | 6.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0077300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…