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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0080000 |
| Transcript ID | LotjaGi3g1v0080000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding family protein; TAIR: AT4G27280.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9LSQ6|PBP1_ARATH Calcium-binding protein PBP1; TrEMBL-Plants: tr|I3SS70|I3SS70_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0080000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8849286..8851373) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTCTTTCATGTATCGTTTATATCATATCTATCACTCATCTCTCCCTTATCTTCTCATTTCACTCAAAGAGTCTACAC TATATCGGTGTGGGCTAAATATTATTGGTTACCCGTCCCCATCTTTACATTAGTTGGTTGCTTCTGCTTCCTTATCATAT ATAAGAGGCTCCACTTAACACATCCTTCTATCATAAGCTACCACACTATCCTCTTTACTAACCACTTCTAGTTCAGGCTT AATTCACAGACAGTTTCAGCTATGGAGTTGGATTATGGCTTGGACTTCGAGGACTACTTCCCATCCATGATCTCAAGCTT AGGCGCAGAAGGGTTTATAGGCGAACTCTGCCACGGGTTTCGCCTGCTCATGGACGAGAACAAGGGCCTTATCACGTTCG AGAGCTTGAAGGTGAACTGTTTCTTGCTGGGTTTGGAGGTGAGGTACGACGAGCTCTTGTGCATGCTAATGGAAGGTGAT TTGGATGGAGATGGTGCTCTCAGCCAAATGGAGTTCTGCATTCTCATGTTTAGGTTGAGTCCTTGTTTGATGGACGGACC AAAAATGCGCACTCAAGGTGTGGTGGAACCGATGTTAATATAATCACACTCATTCCCTCTTCAATCTCAATTACACCTCT TTTTTTCTTTTTTATCTCTCTTCTTTTATCACTCTTCTGTGGTTGGAAATTCAGTGTTAGTTTAACATTGGTGTCATGTA ATTATTCTCACGTCACTACCCAGTCTCACTTAGATCTTTCATCTCTTTATATTCAATAAGTACTGCTTGTCCACATTTGA ACAACACCTGCACCTAAGGGAAGAATGAAGAAAAATGAGAAAAAAATAAGAGATATGATAGGTTGTGTGATAGAGAAAGA AGAGAGAGATAAATAGAAAAAAGTGTGAAAATAAGATGGAAGAGAAAAACTGTGTGAATGAATATAATTAGAACCCCTTT CTGTAGGTGTCCCTTTCTTCTTTTAACTTTGATAGCACCTGCACCTCTTTTTCTTATATATCCTTTTCTAGCTCCCTTTA ATTTCACTCCTTCTTATCTTTTGTCTTATCAGTTACCATATTTTCACTCTCTTTCCTTTTCTTTTCTATTTTCTTTTTGT CACTTCCTTCTTCTCTGCGCCTCTCCTTTCCATCTAAAATAAGATATCAGATGTAACATCACAACTTTCACTCTCTCTTA GTACTACCGTTCTTTCCTCCTGATCAGCTATACACTCGTTAAAAGAGTGAATATGATATGTCATCTGCTCTAACTCAGTG TTGGCTCGATCCGTGTAATTCTCTTCCCTTCAAAGAAAATGGAGGGGGACCATATTGTGTAACTGTTGTCTGTTAAATCT TTGCAATTCCGATCCATGTTATAGAAAATAACAGTCTTTGTAATTCTGTTTCTCTGTTTTGATTTAATAATAATGAATAA TGGTATTTTGAGGTTAATGTTCAAATATTGCATGCATTAATATTTGCTTAGAGCACGCGCGTTCTATAAAAGATGTTTGG TAGCTAGGAGGCAGGGTGGGGGAGGTCATTTCAAGAGTGTCAAGTGAAAGCCAGCTTGTTTAAGCTTGTTTAAGCTGCAT GTATCATCCACTGAGGTAATCACATCATGTGCCCGTTGATCTACCGTCTACGCGCTTGTTGGTAGGTCGACTCGATACAG GGCGACCCCAAGATTGGAGGACCTAAGAAGGTTCAAGTCTAAAATCATTTCAACACATTAGGACGCGCTTCCCCTTAAAT GCCTAAAGGCTTAGAGTCTTGCAAGCTTTGTGAATTGGAAAAGGCAACCCAAAGAGTGAGGCACCCTTAATGTTTGTTGA ATGTGTATGTGCAGCCTAAAGACTTTAACTTTATTTATTCGGCTTCGACGACACTCAAGTATGATTTGAGCGATGCTAAG CTCATCGATACTATTGTTTATTGAACTTATGGACTCTATGATGGACAATGTAATCTTCATACGTAGGTGATATTATCTTG TTGAAACATTTAAGATATTTTGTGAGAAGGACTTGGTTAAAACGCACTCCCCTGTACCGGGCATTATTAGCTACATGGGT AGAAGGCG
CDS sequence (LotjaGi3g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTGGATTATGGCTTGGACTTCGAGGACTACTTCCCATCCATGATCTCAAGCTTAGGCGCAGAAGGGTTTATAGG CGAACTCTGCCACGGGTTTCGCCTGCTCATGGACGAGAACAAGGGCCTTATCACGTTCGAGAGCTTGAAGGTGAACTGTT TCTTGCTGGGTTTGGAGGTGAGGTACGACGAGCTCTTGTGCATGCTAATGGAAGGTGATTTGGATGGAGATGGTGCTCTC AGCCAAATGGAGTTCTGCATTCTCATGTTTAGGTTGAGTCCTTGTTTGATGGACGGACCAAAAATGCGCACTCAAGGTGT GGTGGAACCGATGTTAATATAA
Protein sequence (LotjaGi3g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELDYGLDFEDYFPSMISSLGAEGFIGELCHGFRLLMDENKGLITFESLKVNCFLLGLEVRYDELLCMLMEGDLDGDGAL SQMEFCILMFRLSPCLMDGPKMRTQGVVEPMLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 103 | 99 | 1.1E-51 | – | |
| PANTHER | 5 | 103 | 99 | 1.1E-51 | – | |
| SUPERFAMILY | 6 | 89 | 84 | 3.42E-12 | ||
| Gene3D | 7 | 110 | 104 | 5.7E-13 | – | |
| Pfam | 41 | 91 | 51 | 1.7E-11 | – | |
| ProSitePatterns | 73 | 85 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0080000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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