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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0081300 |
| Transcript ID | LotjaGi3g1v0081300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BSD domain protein; TAIR: AT3G24820.1 BSD domain-containing protein; Swiss-Prot: sp|Q9D5V6|SYAP1_MOUSE Synapse-associated protein 1; TrEMBL-Plants: tr|A0A151RD01|A0A151RD01_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0081300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9087472..9091187) extracted from Lotus japonicus Gifu genome v1.2.
TTATGACCCGTTTTATTTTTTCTGGGAAAAAAGGATACTCGTCGTAGTCGTAGTGCACGCTCACGAATGAATGATGGAGT GGCTTAGACGCAGTCTTTCGAGGAGTCCCAGAAATGGCGAAACCTCAAAAACCCAAACACAATCCAACACCAAAGAACAA GATCAACAACAACAACACATGTTTGGAATCACTGAGGAACTCATCAACCTTGTGAAGTCCTTCACCATTGACACCTTTAA GAATTTCCCTCTCCAAGGTTTCTTGAATTTCCATTTTTTTAATTTGGTGTTTTGTTTTCCTTAATGGGTTTTGCTGCTTT GAATTGTTACAGTGAAAAAGAAAAAAATTTAGGAGATGTTATAATGTCTTAGATCCACATAACTGATTGCAGATGCTAGG ATTTGACATTGGTTGTTTTTGTTGTTGTATAATTTTAATTTGGTTGTTTTAACATTTTTGAGGTGCAGATGAAGATCAAG CTACTTATGGTGAAGAAGCTCAGTCTACTACTTCAACCAAAGTTCGAAAGGATCTCTCCCAGTGGCAAGAGAGACATGCA GTCCTTGTACTCTCAAGTGTGAAGGTTTGATTTCCATTGTTCCTTAGGATGCTAAGGTTTCTTGCTGTTTTACTTGCTTG TGTAGCCTATCTAATATATAGTAAAATTATGATAGGTAACCGCGTCTCTTCGTGTTAGTTAGATGCTTGTTAGATTACTT AGAGGGTTAGCCTATAAATAAGAGGTTTAATGAGAGTGATTAGTATCATTTGGGACCATTGTGTAATATTGGGAATCAGG GAGAGTCCAGGTTCTCTCGAACAACTTGGGTTACCTTCAATAATATCACAGTTTCTATTCTATCTTCTCAATTTTCTGGT TTTTATCAAATTAGCTGTCCTCATTTATAGAAATTGAGGACTTCACCAGTTTACCTTTTTCATTCAAGACGTTGCAATGA CACTGACATGCCCACCCTGTTGAACTTGCTCAGTACTATTAGTCTTAGTCTGTTGGATACGGGCTTATTGGAGCTTATTG AATCTTCTAAGCTCCAGTAAAAGCTCTTTGGTTTGCTTCCAAATGGGTCCTGAAACTTTACTTTTTTTAAGTAATTTTTG TATATTGTCTCTGTTGGATTTCAATGATGATAATGGCGTTAGATTCTAAAGGGGTATGTTTTCCCAGTTCAGTTAATGAT AACAAATGGTTGCCATTAGTGTGCAGCTAACAGTGGTTAAATAATTTTATTTGCCATAAGGGAACAACTCTCAAGATTTT GCCAAAGATTTCAAAAACTCGTATTGTATAAGAAAGAAGCACAATATGCAAGAGACAGTGAGATGCGAAGAATAATGCAT TTGTCAAAAAATTTCTTCAGGTCTGCTTCTGAGTTCTTCATGCCCAAAGTTACTCTTATATCATAATACATAACTGTGAG GATAACAAGATAAGATAAATGGGGATATAGACTCGAGTTCGTAACTTCACATACAATTTCTAACATCAACTTCCCTAACA TAACCCAGAAGATGACGCAGCATATACAGCAATTTTGTGCCCAGAGATAGACTAGTGTGTGGTTTCTTATTCTTGTTTCT GTGATCCTATTATTTCTTCCTTTTGTGTCTGTTTTTCTTCTGTTATAGAAACTATTTTAGCCAGCAACGACACATAAATT GGCTCTCTTAGGCTTGATATGATTCTAGAGGTATAGAATGGCATGAGGTATAAACGGTATCAATAGGGACTTAGATGGTT TATTCATGATCCCCAATTATGCAGCCATCTGTGATTCTGTTTCTTGCTTTATCTTGACGTTCTTAAGTCACTAAAGTAAG TCATTATAACCGTTGATTGTGAAATGAAGAATTGAGATTATGATCATATACTTGCACATGTATAACTGATACTGATAGGG ACTCATAGTTAGTTCGCAGATTAATTAGTTAGTTTGAAAAGCTAGTTAAAGGGAGTATTATTATATGTTGAGAGTGGTTG TGGGAGTTTCAGGGAGAGTGCTACTGGTTCTCTCAAACAACCAATAACCATTGTAGTTCATTCCTGTTATTGAATAACAA TCCGTTTTATACTTGTTTCTATCAATAACAAAGTACAGTGTTCTTTAAATTTCAACCGGTGGTCTAAAGTGTCTCAAACA TTGAGACACTTTAGAGGAGTCAAATCCTAAATTTAATAGCTGTCACTATTTCTTGTTGATCTGTATCAGTATTCTTAAGG AAAAAATGAGACCTAGAGTCATTATTGCCATACATTGTATGCTTATGATATACTTCTGTCAGTTATTGGACAAGTTTTCT GATAGGACATATTTCTCTGTTTATATCCTTTTGGAAACCTGTCTGGCTCAAATAGTTTCTTTTGTGTGTGCTAGCCTATT TGCATGTGCATTTAATCTATCTTTCTAGTAACACTGATTTGACTTTATTCTAAACACTACTAAAGTAGTAATACTTTCAA TCTTATATTGGGGTGGGAAAAGGAAAAATAAACGCTTGACATAGTGCCACAAATAATTATAGTTTTGTTATATTCCAGGA ACTATCTCAACTGAGATTTGTACTGTGTCCACGCCATTTGAAGGAAAATGAGTTCTGGAGAATATACTTTATACTCACCA GAAGCCATATTGCCGAGTAAGTTCTGCAAATTCTTGCTGTATGAGTATGACTACAAATGATTAGAACTGAAGTTCGCTTT GAAAGTTTTGCTCCGTTTCTGTAAATGAGTATGACTACAAATTCTTGCTGTATATCATGACATGTTCTGATGAAATTGAC TTCCCTTCATTGCTAATCAGATATGAGCTACGCGCCATCCAACAGGAGAAACTGAAACGGATGGCAACGGAGGATGAAAA ATCTTCAAATAACAGCCTGTACGAAATTGAAATGGCAGAAGCAAAGCATGGGAGCATAATTGAGCCGCTACCACCTTCGT AGAATGAAAGAATTTACATTCTTTGGTAGCTTGCATAGAACAGGTATTAATCTCAAGTCTGAAAATGTATTAATAACAAA ACTATTAATTTGTTTTGTGCAAGGACTATATTAACATTTCAAGTCTGAAAATGAATTCCTTTAGCTGATATTGTCATCTT ATTCTGAAGTTAATCTCAAGTGTGTCAATATGTACCTATTGACATTGTTCTTAACATTTTTTGCAGACAGACATAGTTGT GGATCTTTACATGATGATGGCTCTTGGGTATAGAGGCTAGCTATTTTTTATGTTGAGAAGTTTGAGGTGCCAGACATCAA ATCCAGATGTCTGGCACGACTGTAACACCGTGGCACATAGCTCAGTTTGCCTTATTTTGTATGACACGATTCATTTATAT AATTGGCACAAATGTTAAATTGACTAATTAGTTTTGTTTATCATATTTGTCCCTTATCATCATTCTTAAATGGTATATAT GTTAGGGTGTTACATTAACATGACCAAAGAAGTTCATATATAGGGTAGGGACATTCTCACCCCTAAGATAGCTTTTCTGG CTTTTCGGGTAGAGTTGGACATATTTTAAATACTCAAGATGGTATAAAATCAATCTTAGTCCCATTAAGAGGCCACTCAT GATGGGTCACCCACAAAAGTTTGTTTTCTTTTGGGGTTAAAGATAAGATACTTAGATCAACACCAAGAGGGTTGCCCGCG ATACTTACTTCATGGGGATTAGGGTCGCAATGGGTG
CDS sequence (LotjaGi3g1v0081300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGTGGCTTAGACGCAGTCTTTCGAGGAGTCCCAGAAATGGCGAAACCTCAAAAACCCAAACACAATCCAACAC CAAAGAACAAGATCAACAACAACAACACATGTTTGGAATCACTGAGGAACTCATCAACCTTGTGAAGTCCTTCACCATTG ACACCTTTAAGAATTTCCCTCTCCAAGATGAAGATCAAGCTACTTATGGTGAAGAAGCTCAGTCTACTACTTCAACCAAA GTTCGAAAGGATCTCTCCCAGTGGCAAGAGAGACATGCAGTCCTTGTACTCTCAAGTGTGAAGGAACTATCTCAACTGAG ATTTGTACTGTGTCCACGCCATTTGAAGGAAAATGAGTTCTGGAGAATATACTTTATACTCACCAGAAGCCATATTGCCG AATATGAGCTACGCGCCATCCAACAGGAGAAACTGAAACGGATGGCAACGGAGGATGAAAAATCTTCAAATAACAGCCTG TACGAAATTGAAATGGCAGAAGCAAAGCATGGGAGCATAATTGAGCCGCTACCACCTTCGTAG
Protein sequence (LotjaGi3g1v0081300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEWLRRSLSRSPRNGETSKTQTQSNTKEQDQQQQHMFGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTK VRKDLSQWQERHAVLVLSSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLKRMATEDEKSSNNSL YEIEMAEAKHGSIIEPLPPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 2 | 177 | 176 | 8.6E-70 | – | |
| PANTHER | 2 | 177 | 176 | 8.6E-70 | – | |
| MobiDBLite | 11 | 34 | 24 | - | – | |
| SUPERFAMILY | 39 | 138 | 100 | 1.02E-16 | – | |
| Gene3D | 61 | 143 | 83 | 2.4E-6 | ||
| ProSiteProfiles | 73 | 132 | 60 | 10.745 | ||
| SMART | 80 | 132 | 53 | 1.9E-10 | ||
| Pfam | 85 | 135 | 51 | 1.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0081300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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