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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0082400 |
| Transcript ID | LotjaGi3g1v0082400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT3G17609.2 HY5-homolog; Swiss-Prot: sp|Q8W191|HYH_ARATH Transcription factor HY5-like; TrEMBL-Plants: tr|I3T9L5|I3T9L5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0082400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9195515..9198446) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGCATAAGTGGGGAGGGACCAATTAGAAGATCACATTTGTCATTTGTGTGTACCTTCCATAAATGAAAGGGGCGGTT GTGTGCACATCAACGTGTTCCTTTGTGAACCAAACTTTTTGGACCATTCCCATGTTTCATCGTCCATAGTTTCTGATGAA GTGGTTCAATCCAAAACAAGGCCCCATGTTGCACACGTACTAATTAAAACTAATACTATCAACACTTTTTTCTTTGTTCA AGAATCCTCTCAGAATTAAGACCCTTCAGCACAAGAGATAAGAGAGAAAGAGAGGGATAATAATATGTCTCTTCCAAGTA AAACCCCTCAGCAGCTGAAAGAAGGAGCAGCAGCAGCAAACTCATCCTCTTCTTCATGGAACAGCATAAACACCCACACA AACACTTTCCCTCCTTTAACTCTACACAGAAGCAAACTTGGTAGGTAAATTAAAATCAGTTTCTCCATTTTCCCATTTCT CTTTTTTTTTTTAATTAACAGCATATATATTTGGATGAAATTTAGAGGGAATAATTTTATTTTAAATTAAAAAATATATA TATTTGCATCATATGCATGATAATGTATTATGTGTTCCTCTCATTTTTTATGAAATAGAGAGATTATTATTCTATGTACA TGACTTAATTATTCATGGTGAAATAATTAGAGTGAGCTGATTATGATTATAAATTAATACATTACAGAAGATAGCGATGA AGATATGTTCACAGTTCCAGATGTGGAAGGCACGCCAATTAGTAGTGTTCATTCTGCACTGACACTTACAAATGGTAACC CCAATCAAAGTAATGTGGCTGATCCTCAATTTCAAACGGGCTTTTCCGGGAAGCGCCGCCGGGGAAGAAACCCTGCAGAC AAGGAGCATAGACGCCTCAAGAGGTATGTAGATTTTTTGTTTTTGGGTACAAGAGATATATATGTACGTAGAATTTAGAA AATGCACACATGTTTAATTTGCATATTTTCATGAGCTTAATTATTCATATGTTTTTGCAATATGGTGGCTGAAACAACTT CGTCAAAGAGGAGATTTGGGTCTTAGAATTGTTGCAACATTTTTTCTGGGTTAAATGATGATGTGTGCTTTGTCAAAGAA ATGTCTTGAACCAATTAATTAACTTGATGGAATTTGGTTATTATTATTTTTAAATGAAATTTGCTTAAATTTGACCCAGG GTATATATCATAGATGACAAATCCATAACCGGAAAAAAAAAACGTGTGCAATTTAACCAACGAGGAGTGCTCGAAAGAAC CAATTATTTTATTGTTTAAGCATTTCAAAATATAATAGAGGAGAATCCTTCGTAGATTGATGTATAAATATATATAATAA AGTATATATAGGCGGTCACTCTCTAGAGTATATCAAAAGAGAAAAAGGATGATGCATACCAAATTAAATTTGTTCACACT CACCTGGTAAGAATAAATTACTTTCTCTCAAAAGGTTGTGTTAATTTTCCGCTGCTAATTTGAGAATTTTTTTGGTAGAT GATCAATTGTTACCTCTGTAAGGTATGTCCTGACCGGTGATAGTGACCAAAGTCAAATTCGTCCAAATTAAACTTTTCTG CATAAAAAATCCTTACCAATAAGTATTTGTATATTTTGGCAAATAGTTGAGCTTCTTAAAGATATAGAGAGAATTTAATT TCTGAACAATGTGTCAAAGAAAGAATATGTGGAAAAATGTTTATTCAGTTAATGTGATTTTTGAGTGTGAAGGGAAAATT TGTAATCATACGTGAAGATAACTTGTAATAAAATAAAATAAAACATAGATACATACTAGATAATTTTAATACATTTTATA AACAATGATGTTATTGTATTTCGTCACTATATTTATTATTAACATTTATGTATCTAAAGTCGTTATAAAACCATAATGCT GAGTGTACAAATGTATGATATTAACAGGTTGTTGAGGAACAGAGTCTCTGCTCAACAAGCTCGCGAAAGAAAGAAGGTTT ATGTGAATGACTTGGAATCAAGAGCTAAAGAATTGCAAGATAAAAATGCTGTCTTAGAAGAACAAATCTCAACTCTGATC AATGAGAACACTATGCTGCGTAAGGTAAGCGTGGTATCATATGTGCTTTCTTTCTAAATCCCTTAAACATGACAAAATAT TATGTTTTCTTAAGGGGAAACTGCATTGACATTTTCTATGATTTCCAAAATTACCTTTAACGCAATGTTAATACAAGTTT TTAAGAGTGAAAATGAGAAAGATTATAATTAATGTGTCGACATTTCATTCTCCTACTTAAATAAAAGTAATATTGTCAAA AAATAATTAATATGATACAAAATTTAATTATTTTTTGCTTATTTAAAGAAAGGAGTAGGTATGTACCAAAAAAACGAAAG GAGTAGGTGATTTCAATCATTCTCTTAAATGTTTTTCTAGATCTGTACTAGCCTATATATTGAGTATTTCATTTCAATAT GCATGGAGTGTATTTTTGTGACTTACAATACAGATTGAGGTATATATATTGAATATTATTAATTTGCTGGCAGGTTCTCA TGAATGCAAGGCCAAAAGTTGATGAAAGCAGTAGCACAGAACAAAAGCAGGACCAGTTAAGTAAAAGCTAACAAGCCAAG CTATAGAATGTGCGTCAGAATATCAAATATGGCGCATATTTAAGAGATGCATTAATTTATATTTTACTCTAGACACTAGA AATGTAAATTGTATGACAACCTTATCCCTTTAATTACTGGGTGAATATTGTTCTTCGGACCCTCTTTTCCCTACTGCTAC GCCTATTCTAGCTTATCCGTTTATAGTAAAAAATATAGGAGTTTCTATAAATTCCTACTTCTTAACAATAAGGTAGTGCC AAAAAAATGGAGAAATAGGGTTATTTAAATTATCAAATGTTAAAGAACTTAT
CDS sequence (LotjaGi3g1v0082400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTTCCAAGTAAAACCCCTCAGCAGCTGAAAGAAGGAGCAGCAGCAGCAAACTCATCCTCTTCTTCATGGAACAG CATAAACACCCACACAAACACTTTCCCTCCTTTAACTCTACACAGAAGCAAACTTGAAGATAGCGATGAAGATATGTTCA CAGTTCCAGATGTGGAAGGCACGCCAATTAGTAGTGTTCATTCTGCACTGACACTTACAAATGGTAACCCCAATCAAAGT AATGTGGCTGATCCTCAATTTCAAACGGGCTTTTCCGGGAAGCGCCGCCGGGGAAGAAACCCTGCAGACAAGGAGCATAG ACGCCTCAAGAGGTTGTTGAGGAACAGAGTCTCTGCTCAACAAGCTCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGG AATCAAGAGCTAAAGAATTGCAAGATAAAAATGCTGTCTTAGAAGAACAAATCTCAACTCTGATCAATGAGAACACTATG CTGCGTAAGGTTCTCATGAATGCAAGGCCAAAAGTTGATGAAAGCAGTAGCACAGAACAAAAGCAGGACCAGTTAAGTAA AAGCTAA
Protein sequence (LotjaGi3g1v0082400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLPSKTPQQLKEGAAAANSSSSSWNSINTHTNTFPPLTLHRSKLEDSDEDMFTVPDVEGTPISSVHSALTLTNGNPNQS NVADPQFQTGFSGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAVLEEQISTLINENTM LRKVLMNARPKVDESSSTEQKQDQLSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 186 | 186 | 2.3E-76 | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 1 | 186 | 186 | 2.3E-76 | – | |
| MobiDBLite | 72 | 106 | 35 | - | – | |
| MobiDBLite | 72 | 88 | 17 | - | – | |
| SMART | 103 | 167 | 65 | 5.8E-12 | ||
| Pfam | 104 | 163 | 60 | 1.1E-11 | ||
| ProSiteProfiles | 105 | 168 | 64 | 11.679 | ||
| SUPERFAMILY | 107 | 166 | 60 | 4.81E-13 | – | |
| ProSitePatterns | 110 | 125 | 16 | - | ||
| CDD | 117 | 158 | 42 | 1.27823E-12 | – | |
| Coils | 123 | 157 | 35 | - | – | |
| Gene3D | 126 | 167 | 42 | 3.9E-21 | – | |
| MobiDBLite | 168 | 188 | 21 | - | – | |
| MobiDBLite | 174 | 188 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0082400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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