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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0083700 |
| Transcript ID | LotjaGi3g1v0083700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein XRI1; TAIR: AT5G48720.2 x-ray induced transcript 1; Swiss-Prot: sp|Q6NLW5|XRI1_ARATH Protein XRI1; TrEMBL-Plants: tr|A0A151TRF9|A0A151TRF9_CAJCA Protein XRI1; Found in the gene: LotjaGi3g1v0083700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9433334..9437213) extracted from Lotus japonicus Gifu genome v1.2.
GATTAACCAAACATTCACAACAAAAGAAAAAATTAGTTTTGGTCTTTTAATATTATTATCATAATTTTTTTTTTATATGT AGGTATAAGAAGGAGAGCACAAATCTCAAGCAAACGAAGGAAGAGGAGTGGACTATGATATAGACTCAGGAAAATCGATC GTTCTGTAACGGTTACTTTTGTGTGTGTGGGTTTGTGACTGTGACTGCGTTTGTGAGAAGAGACTCTGATCAGTGACGAC TAGGGATTTGGTGGTGGCTCCTTGCTTCTGAAATGGATTTCAACAACAATGACAAGTAAATCCATGTCTTCCTTTTTCTC TATCTCTATTTTTCCCTTTTGCGTTTGATTTGTTTATGGCAAATGGTTTTTAGGTTAGTCCCAGAAATGCATTGATTTTG TTTGTGTTGTTTGTTCATGCGTTTTTGTGTTTTGTTGTTTCAGAAATGGGATGGATTTTTTTTTCATTTTTTGAATTTGT GTAATGTGCTAAAAACAAATTGTGTGGGGGTGTTTTGTTTTGTACTTTGAATGTTTCATCAAATTCTGGAATGGGGTTTT TGTTGTCTGGGGGTTTGGTTTGTTCTTGAGATTGTTTGATTTGTTTTAAAGCTTATAGGTTATGTGGATTAAATTGGTGG GTCATCATCATTTGTGCTTTTTTCCTGTGTTGATTTTTCTTTTCTTTTTTCTTTGTTACCCTTTTCTCTTTTCTGCTTTT GTTGTTATTCTTTGGCTAATTCGCCCGCGGATGAAACAGAAACTGCTTAAAGTCTTGAACACATGCTATAGTTGTTAATG TAGAATCTGAAAGTTCAGTTTGTAACTTATTGTTTGGTGGTTTGAGTGGGGTAATTGCTTCGGTTTACCATGTTGTCGAA AGGGAGATTGTTTTGGTACTGAGTAATGCGATTATGCTAACCCTTGTGAATTGGTTTTGGAATGGACTTATTTTCTGTTT TCTTTCACTAGTTTATGTTGGCTAATCTTTGGCAATGTCGCATACTTTGCATCACAACTATGGTATTTACTTGTGTTCTC TATCTTGGTGGTTCCAGGGAGCCATGGAATTGGCATGGGGAGGGTTATACTCTCCAAGAGACTTCTAATTTTGGTAAGTC CCTCTTTAATTTTAAGTTAATTGTTCTACCTAAGCAACGCTTGAGAAATATTTGTTGGTTTGAGTAGAAATTTCGGAAGA GCTGTGGAATGACGTGCCTCAAAATGAAGAAGATCTTTCCTACATGTTTGATGATGAAACTACCCCTGTTAAGGCTGTTG GTGATTTGGCATATAATGGTGGTAAGACAGTTCTCTGGAACGCAGCTTTGTCGACATTGTCTGATGAATTGTTCCTTTTC CTTTATTATATTATTGTTCATTAGTTATCATCAGCATCTAATTCAAATAATGGTGGATTTCAGATTCAAATAACGTGCCA AAGGAACTAGAGGAATGCAGGGAGACTTCTCAAGTCAAGAGGCGGCGCATGCTACAGTTTAACAGCCAAGATAGGGATCA CTCTCTATCAAAGGAGGAGATGACTGCGGCATATTTGAAAAATGTCAGTGCTTGAATACTTTTTCAGGATTAGCTTTTCA CACTCATAGCATGTTGGATGGTTCTAAATATAGGAAGATGACAAGAGAAGTTCAGATTTGTGCAAAATTGCAATTGTGTT CTTGATATTTGAAAAATGCTAGTGCTTGAATATTTTATCTGGATTAACTTTTAACACTCATAGAGTGTTGGATGGTTCTA ACAGTATTTAGACGACTAAAGAATATTAGATTTGTGCAAAATTGCAGTTGTTTTCTTGATTGAGAAAGGAATGCATAGTC TTCAATTTCATGACTAAATGTTAGTTATTCTTATTATTGTTGGAGTTATCTTTTCTTATGTTATACTTCATAGCCATCAT TAATAAAAAATGACTTTCCATTGTTTAGCCTCAATTCCTCCAATTCATGCTGCTACACTTACCTTTTCTCATCTGCCTTC TTTGCCTGCTAGGCAAGATGCAAGTTACAAAGGCTGTCTTTGTAGGACATGTATTTTTATATTACTATTTTACTTCCAAG TGCTGAATCATCTGTTAAATGAGGCTTTATTCACTATCAGAATGCATGTATACTGTCAGCAAATGATAGGTCACCAAATG ATAGCTTGATATGGACCATTGTTAACTTAAACCAATTGCGATGACTTAGCAGTTAGCAGAGCTTGTCGATGAGGTGTTTG GTTAAAATCTTTAATCTTCTTTATAGTATCTATTATCTAGTGGTGTGTTTCTGTGTTTTTGCGAGTCCTCTTAGTGGTTC TTATCCCTCAACAATGGGAAGTCTCTGTTTTAGCTTGACAGTATTGAGTATTTTCTTTTGTTGAAGTCAATGAGACATGT CGGGGATTTGCCTTCGTTTAAGACTGTTCTTTGTGACATATATAGGGGAAGGAGGACGCCATGAAGGATATTTTCCCTGA AGTGTCCCCATGGGTGTCTGGGGCATCATCAGGTTTGGCATTTCTATTTCTCTTTTTGAAGATAATACCGATAACTTGAA TTTCTATTTCTGATCTTTTCCTAATCATAATAGAATGTGCATTAGGAAATGCATCTGCCTCTGGTTATGACGACCTTGAG TCAACTGAAGGATGGCTTGCTGAATACTTCAATGATACTGATATGCAACTCAGTCCTGATGATTTGTACGCTTCTTTGGA CCACTGATTATTTTGCGCACAGTTGGCTTACACATAAAAATCTAACAATTATATTATTTGACTCAGGAATTTTACAGGAG CAGATGATGTTCACATTGATATTGCAGGTAGATGATATTGTTATCTATTCACTATTGTCTGCTAATTTTGTTTTTTCCTT CATTCGTAACTCTTTCCTTTGTGCTTCGAATCTTATTCGAAACATTTTCTTCCTACCACAGAGCTTAGTGACATCCCACC ATCACAAGAACAACATATGGTTCAGAAGCGTGTCACTGTCACTCGAACTCCTAAAAATATTATTTTCAAAGGTTTGACTT TATTCTTATATAGTCTCTTTGAGTCTGTTGTATGCTATAGGAATACATTCACAGGATGTGAGAAGTAAGCTTGAATTTAC GAAAGTTGGGATGTCATTTTTTGACATGAAAACAAATTCAGAGTTGTTCTTCTTGTTTAGGTCGGAAATCCTTTATCCGG ACACCGACAAAGTTGGCTTCTACTGTGGCCTATCCATTTGCCTTCATTAAACCCAGTGGTGCGCATGGAGATGTAACTCT GAAGGAAATTAACCAGCGCATTCGAACTCCACCTCCTTCAAAGTCAAAGCAAAACAGTGAAGATCCATCTGCTTATCCCA AATCAGCCTTCTCAGGGAAGCCTGTGGTTGGTAAAACAAAAATTCGCACTGAAGGAGGGAAAGGAAGCATCACAATTATG AGAACTAAAGGCTAAGTGTAAGTTGTTTGGTACTAACTTTTATCTCACACACTCACCTATTGATGTGTGTCGTTGCTTAA TTTTCTGTAATATACCCGGCGGATTATACTAGTTGATACTGCAACTCTTTTTTTGGTCTTATTGACATCCGTAAATTACA CCTCCTTAGTGTTATTTTGGGGTACATGATTTTGTTAAGACTAATGAGAATCTTAATTATATTTAGCTCCTTAGTCTCTG CAGCTCCCCCTGGCTGATGATTTTACTAAGCTTGCGCTTAGTTATTGTAATTGAAACATACAGATATCTATATTTAGTTT TGCGGCCTTGTTTATATTTCATCTCCACCCCTTGTAACATGCAAAAGTTGCAAAAGACTGGTGCGCATATCTATGTGTAA TAATATTCTTCTTTATAATGTTACTGAAACGTACCTGCAG
CDS sequence (LotjaGi3g1v0083700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCAACAACAATGACAAGGAGCCATGGAATTGGCATGGGGAGGGTTATACTCTCCAAGAGACTTCTAATTTTGA AATTTCGGAAGAGCTGTGGAATGACGTGCCTCAAAATGAAGAAGATCTTTCCTACATGTTTGATGATGAAACTACCCCTG TTAAGGCTGTTGGTGATTTGGCATATAATGGTGATTCAAATAACGTGCCAAAGGAACTAGAGGAATGCAGGGAGACTTCT CAAGTCAAGAGGCGGCGCATGCTACAGTTTAACAGCCAAGATAGGGATCACTCTCTATCAAAGGAGGAGATGACTGCGGC ATATTTGAAAAATGGGAAGGAGGACGCCATGAAGGATATTTTCCCTGAAGTGTCCCCATGGGTGTCTGGGGCATCATCAG AATGTGCATTAGGAAATGCATCTGCCTCTGGTTATGACGACCTTGAGTCAACTGAAGGATGGCTTGCTGAATACTTCAAT GATACTGATATGCAACTCAGTCCTGATGATTTGAATTTTACAGGAGCAGATGATGTTCACATTGATATTGCAGAGCTTAG TGACATCCCACCATCACAAGAACAACATATGGTTCAGAAGCGTGTCACTGTCACTCGAACTCCTAAAAATATTATTTTCA AAGGTCGGAAATCCTTTATCCGGACACCGACAAAGTTGGCTTCTACTGTGGCCTATCCATTTGCCTTCATTAAACCCAGT GGTGCGCATGGAGATGTAACTCTGAAGGAAATTAACCAGCGCATTCGAACTCCACCTCCTTCAAAGTCAAAGCAAAACAG TGAAGATCCATCTGCTTATCCCAAATCAGCCTTCTCAGGGAAGCCTGTGGTTGGTAAAACAAAAATTCGCACTGAAGGAG GGAAAGGAAGCATCACAATTATGAGAACTAAAGGCTAA
Protein sequence (LotjaGi3g1v0083700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFNNNDKEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAVGDLAYNGDSNNVPKELEECRETS QVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKEDAMKDIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFN DTDMQLSPDDLNFTGADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFAFIKPS GAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 305 | 305 | 1.6E-144 | – | |
| PANTHER | 1 | 305 | 305 | 1.6E-144 | ||
| MobiDBLite | 255 | 273 | 19 | - | – | |
| MobiDBLite | 255 | 305 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Male meiotic nuclear division | A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the male germline. | ||
| Biological process | Female meiotic nuclear division | A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the female germline. |
Expression pattern of LotjaGi3g1v0083700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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