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LotjaGi3g1v0089200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0089200
Transcript ID	LotjaGi3g1v0089200.1
Lotus japonicus genome version	Gifu v1.2
Description	MLP-like protein; TAIR: AT5G28010.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp\|Q941R6\|MLP31_ARATH MLP-like protein 31; TrEMBL-Plants: tr\|I3SQK0\|I3SQK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0089200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:10078212..10079760) extracted from Lotus japonicus Gifu genome v1.2.

GAACATTTTCCTTGTCTATATAAGGCTAGCTGCATACCCTACCTCATCTCTCATCGCTTTGTTTGTTCTATTCCTTCCTT CTATATAGCTTGTTTTTCCAGTCATGCAGCAGGCACTTCCTCGTAAGGTTAATACTGAACTTGGTATCAAATCCCCTGCT GCCAAGTTCTACAACCTCTTCGCAACGAAGCTTAACTGTGTCCAAAATCTTTGCGAGAGAGTGCCTGAAACCAAGCTTCA GGAAGGTGACTGGCATGTCGTTGGCTCGGTCATAAACTGGACTTACGTTATAGGTAATTAAGTTTGTCTAATTCAACTAA TATGCACTAGAAAATTGGATTTTTTTTTTATAAATGATAGAGTGAATGCTCAATTTTGTCCTTAAAAGAAGAAAATACTC ATGCGGTCCCAGATTACGTCAAATGTCGGTCATGTTAATCTATATATATGGTCAAGATAAAACGTTGGTCAAGTTAGTCA TTGTGACGACATTTAACACAATCAAGCACCGCGATGATATTTCCTTCTTCTATGGATTAACTTGCTCGACGCTTATAGTT TCAGAGACGAAATTGAATATTGACTCCAAGTTATAGCATCATAGATGGTGTCCTGATACAATACTTGTAACTTAACTATA GGATTTGATTAGATTAAAGTTTATAAAGTAAGTAACATTATTGGGCGGTGCTATGAAGAAATATTTGTTGGGGAGGATCT ACCCACTTAATGAAATATGAGTCTTGAGATGAATAGGCTCATAGCTATACCTTCGGAAAAAATATAGTAACAAGATAAAT TACAAACTTTGTCATAAATTGTCATTTCTATAATGAGTTACTAACTTAGTGGTATACTAATACACCATCATTTGGGCGGT TTATGTGTATGATTCTAGCATACTTCATTTTAATTTGTTTTCTATCTTAATTGTGAAATTGACCACAGATGGCAAGGTAA ACACATGTGATGAGCGTATTGAAGCCATTGATAAACACAACAAAACAATCAAATACAGCCTCTTCGGTGGAGATATCAGT CGCAACTTTAAGACCTTTACACTCATCCTTCAAGTGACTGATAATATTGATGGCAGTGGTGCTGCTGTTAAATGGACTAT TGAATATGAGAAGCTCCATGAGGATAATGAACCCCCACATGGCTGGGTGGACTACTTGAATAAATGCACTGGAGACATTG ATGCTAATCTTTTCAAGGTTTAATCAGCTCCACAGGTTATGATGAAGAAAAAAGCAAATAATTAATAAATAAATGGGCTT GGTTTGGGGAATAAAGTGCATATCTATATATATATATATATATATATATATATAATCAGTGTGAAGTTTGACATGTAAAA TAATTGATCGAGATGCTCCTTTAATTATTTGTGTAAAGTAAAGATGCATGCTTCTCGGTGAAGTTTATGTTAAAGGGTTC GTCATACTACAATAAATAAATGGATATTCGTGTGTGCTTTATTGTTTCTGAATTGGTTTAAACTGGTTAGCCAAATCATC ATTCAGTTGAGGGACTAAAGCATTACGAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0089200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGCAGGCACTTCCTCGTAAGGTTAATACTGAACTTGGTATCAAATCCCCTGCTGCCAAGTTCTACAACCTCTTCGC AACGAAGCTTAACTGTGTCCAAAATCTTTGCGAGAGAGTGCCTGAAACCAAGCTTCAGGAAGGTGACTGGCATGTCGTTG GCTCGGTCATAAACTGGACTTACGTTATAGATGGCAAGGTAAACACATGTGATGAGCGTATTGAAGCCATTGATAAACAC AACAAAACAATCAAATACAGCCTCTTCGGTGGAGATATCAGTCGCAACTTTAAGACCTTTACACTCATCCTTCAAGTGAC TGATAATATTGATGGCAGTGGTGCTGCTGTTAAATGGACTATTGAATATGAGAAGCTCCATGAGGATAATGAACCCCCAC ATGGCTGGGTGGACTACTTGAATAAATGCACTGGAGACATTGATGCTAATCTTTTCAAGGTTTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0089200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQQALPRKVNTELGIKSPAAKFYNLFATKLNCVQNLCERVPETKLQEGDWHVVGSVINWTYVIDGKVNTCDERIEAIDKH NKTIKYSLFGGDISRNFKTFTLILQVTDNIDGSGAAVKWTIEYEKLHEDNEPPHGWVDYLNKCTGDIDANLFKV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SMART	SM01037 View details on SM01037 Search for proteins/transripts with this domain View external data on SM01037	4	154	151	6.9E-38	IPR000916 Show description in modal box View details on IPR000916 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.530.20 View details on G3DSA:3.30.530.20 Search for proteins/transripts with this domain View external data on G3DSA:3.30.530.20	4	153	150	6.7E-40	IPR023393 Show description in modal box View details on IPR023393 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF55961 View details on SSF55961 Search for proteins/transripts with this domain View external data on SSF55961	5	153	149	5.15E-33	–
PANTHER	PTHR31907 View details on PTHR31907 Search for proteins/transripts with this domain View external data on PTHR31907	5	153	149	5.2E-60	–
PANTHER	PTHR31907:SF15 View details on PTHR31907:SF15 Search for proteins/transripts with this domain View external data on PTHR31907:SF15	5	153	149	5.2E-60	–
Pfam	PF00407 View details on PF00407 Search for proteins/transripts with this domain View external data on PF00407	5	153	149	2.0E-40	IPR000916 Show description in modal box View details on IPR000916 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	152	154	3	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006952 View details of GO:0006952 AmiGO InterPro QuickGO	Biological process	Defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.	Subterm of View details of GO:0006950

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0089200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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