Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0091200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0091200
Transcript ID	LotjaGi3g1v0091200.1
Lotus japonicus genome version	Gifu v1.2
Description	Glycosyltransferase; TAIR: AT1G22340.1 UDP-glucosyl transferase 85A7; Swiss-Prot: sp\|F8WKW1\|UGT2_GARJA 7-deoxyloganetin glucosyltransferase; TrEMBL-Plants: tr\|V7BM88\|V7BM88_PHAVU Glycosyltransferase; Found in the gene: LotjaGi3g1v0091200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:10477434..10479918) extracted from Lotus japonicus Gifu genome v1.2.

GAGAAGGAAAGCCAAGTCCCCAACCACTCCACAACTCATAACTCATTACATCCTTCACAACCATCCTTCAGAAAAATGGT GTCACCAAAGCCTCATGCTGTGTGTGTACCATTTCCAGCCCAGGGCCATGTGAACCCGTTTATGCAACTAGCCAAACTCC TCCGTTGCATGGGTTTCCACATAACATTTGTGAACACTGAGTTTAACCACAAACGTTTGACCAGGTCTCTTGGGCCAGAA TTTGTGAAGGGGCTGCCGGATTTTCGCTTCGAAACCATACCCGACGGTTTGCCACCTTCAGATAAGGACGCTACTCAGCA CATTCCATCACTGTGTGATTCAACTAGGAAGACTTGTTATGAACCTTTCAAAGAGTTGGTCAACAAACTCAACTCTTCAC CTGAAGGGCCTCCTGTGAGTTGTGTAGTTACCGATGGTGTTATGGGATTTGCTTCAAGTGTGGCCAAAGATCTGGGTATT CATGAGATTCAGTTTTGGACAGCATCGGCTTGTGGCTTCGTCGGATATCTGCAATTCGAAGAACTTGCCAAAAGAGGCAT TATTCCGTTCAAAGGTGCGATTTCTTCCTGTGATTATTTGCTTTTTTTTTGGAATGCTAAAATGAATAAAAGAATGGTAG CACGTTGGGGTGCTAGTACTCATTCTCATATTCGCGGTTTTAAAAATTAGTCATATCCTTTCTCATACCAACTTAGGTAG CAACTTGAAAATCTACCCATATCTCGTGTGACTGCTTCCCGAATTTTTTTCATGAATTAGAATTTAAGTGTTGCTCAACC ACGGGTTCATTCATTTTGGACAGTCTGCCACCGAACCCATGTCATCTTGGCGTCTAGGGACTGCCCACATAAGAATAGGG ACAAGTTTCACAGAACATCAAAACTAAGGAGAAAGATGCACGTGACAAAATAAATTCTAGTAGTAAATAATGACTATTGG ATTAAAAGAAAATCAACAGTGCGGAAATAGGAGCAACACATTAAAACTACTCTTGGAGCAACTTGATGTTTCCTCAGTAA AAATAATTGATATTGCATGTGCGCTGGTCACTGCTTTAATTTATGTAGCATTTACTCATGTACAACCACATGCCTATTTA ACAGATTTTTACATTATCCATGATAAGTATTTTCTGTGGATACCCAATAGGCCCAACCGCCCAAGACCCATTAACATTCT TAATCTCCTTTCTTGACAATAATCTTCTAATATGAAAATAGTACGATTGATTCAACAATGATTTATATATTGATATTGCT CTATTTCGGATGCATTTGTCAAATTTCAGATGAAAATTTCCTGAGCGATGGTACCTTGGATACAACTTTAGATTGGATCT CTGGCATGAAAAACATGCGACTTAAAGACATTCCAAGCTTCATTAGAGTCACCGATCTAAAGGATATCATGTATGATTTC TTGGGTTCTGAGGCACGATACTGTTTGAGATCTTCTACAGTCATCATTAACACATTTGAAGAATTGGAAAGTGAAGCCCT TGATGAGCTTAGGTCTGCAAACCCAAACATATATAACATTGGCCCACTTCAACTGCTTGGTAGAAATTTTCCTCAAAAGG ACGACGGTTTTAAGGCAGGTGGGTCAAGTTTATGGAAAAATGATTCTGAATGCATGAAATGGCTTGATAAATGGGAACCT TCTTCAGTGTTATATGTTAACTATGGATGCACAACTCTTATGACTGAGCATCACTTGAAAGAATTTGCTTGGGGAATAGC AAATAGCAAAGTCCCATTTTTATGGATAATTAGACCAGATGTTGTGTTGGGTGAGGACTCTATAAATGTGCCACAAGAGT TCTTAGATGATATCAAGGACAGAGGATATATTGCAAGTTGGTGCTTTCAAGAAGAAGTACTTACTCATCCATCAATTGGG GCCTTCCTCACTCATTGTGGTTGGAATTCTTCATTAGAAGGCATATCTTCGGGTTTGCCTTTGATTTGCTGGCCTTTCTT TTCTGAGCAACAAACAAATTCAAGGTATGCTTGCACAACATGGGGAATAGGGATGGAAGTTAACCATGATGTGAAGCGAG AGGAGATAACAACCCTTGTGAATGAAATGATGAAAGGAGAAAAGGGAGAAGAAATGAGGAAAAAGGGTTTGGAGTGGAAG AAAAAAGCAATAGAAGCTACTGGTTTAGGAGGATCATCTTACAATGATTTCCATAAGTTCATAAAGGAGACTCTTCACCA CAATGCTATCTGAGTTTGTTTTTGCGTGTCAAAATCTATATATATATGTAAAGCTCACTTGAGCTATATGTAATAAAAGC ATTAAACAATGAAGTTAAACAAATTAAATTTCTATTCAACTTTCAATATAATGTAACTTTTGAAATATTTCAATTTTTAT GATTTTTGACTTTACACATGCCAATATGATGTAACCTTTGATTAAATTATGTAATAATATTTTTATTAAATACATTAAAT ATAAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0091200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTCACCAAAGCCTCATGCTGTGTGTGTACCATTTCCAGCCCAGGGCCATGTGAACCCGTTTATGCAACTAGCCAA ACTCCTCCGTTGCATGGGTTTCCACATAACATTTGTGAACACTGAGTTTAACCACAAACGTTTGACCAGGTCTCTTGGGC CAGAATTTGTGAAGGGGCTGCCGGATTTTCGCTTCGAAACCATACCCGACGGTTTGCCACCTTCAGATAAGGACGCTACT CAGCACATTCCATCACTGTGTGATTCAACTAGGAAGACTTGTTATGAACCTTTCAAAGAGTTGGTCAACAAACTCAACTC TTCACCTGAAGGGCCTCCTGTGAGTTGTGTAGTTACCGATGGTGTTATGGGATTTGCTTCAAGTGTGGCCAAAGATCTGG GTATTCATGAGATTCAGTTTTGGACAGCATCGGCTTGTGGCTTCGTCGGATATCTGCAATTCGAAGAACTTGCCAAAAGA GGCATTATTCCGTTCAAAGATGAAAATTTCCTGAGCGATGGTACCTTGGATACAACTTTAGATTGGATCTCTGGCATGAA AAACATGCGACTTAAAGACATTCCAAGCTTCATTAGAGTCACCGATCTAAAGGATATCATGTATGATTTCTTGGGTTCTG AGGCACGATACTGTTTGAGATCTTCTACAGTCATCATTAACACATTTGAAGAATTGGAAAGTGAAGCCCTTGATGAGCTT AGGTCTGCAAACCCAAACATATATAACATTGGCCCACTTCAACTGCTTGGTAGAAATTTTCCTCAAAAGGACGACGGTTT TAAGGCAGGTGGGTCAAGTTTATGGAAAAATGATTCTGAATGCATGAAATGGCTTGATAAATGGGAACCTTCTTCAGTGT TATATGTTAACTATGGATGCACAACTCTTATGACTGAGCATCACTTGAAAGAATTTGCTTGGGGAATAGCAAATAGCAAA GTCCCATTTTTATGGATAATTAGACCAGATGTTGTGTTGGGTGAGGACTCTATAAATGTGCCACAAGAGTTCTTAGATGA TATCAAGGACAGAGGATATATTGCAAGTTGGTGCTTTCAAGAAGAAGTACTTACTCATCCATCAATTGGGGCCTTCCTCA CTCATTGTGGTTGGAATTCTTCATTAGAAGGCATATCTTCGGGTTTGCCTTTGATTTGCTGGCCTTTCTTTTCTGAGCAA CAAACAAATTCAAGGTATGCTTGCACAACATGGGGAATAGGGATGGAAGTTAACCATGATGTGAAGCGAGAGGAGATAAC AACCCTTGTGAATGAAATGATGAAAGGAGAAAAGGGAGAAGAAATGAGGAAAAAGGGTTTGGAGTGGAAGAAAAAAGCAA TAGAAGCTACTGGTTTAGGAGGATCATCTTACAATGATTTCCATAAGTTCATAAAGGAGACTCTTCACCACAATGCTATC TGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0091200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSPKPHAVCVPFPAQGHVNPFMQLAKLLRCMGFHITFVNTEFNHKRLTRSLGPEFVKGLPDFRFETIPDGLPPSDKDAT QHIPSLCDSTRKTCYEPFKELVNKLNSSPEGPPVSCVVTDGVMGFASSVAKDLGIHEIQFWTASACGFVGYLQFEELAKR GIIPFKDENFLSDGTLDTTLDWISGMKNMRLKDIPSFIRVTDLKDIMYDFLGSEARYCLRSSTVIINTFEELESEALDEL RSANPNIYNIGPLQLLGRNFPQKDDGFKAGGSSLWKNDSECMKWLDKWEPSSVLYVNYGCTTLMTEHHLKEFAWGIANSK VPFLWIIRPDVVLGEDSINVPQEFLDDIKDRGYIASWCFQEEVLTHPSIGAFLTHCGWNSSLEGISSGLPLICWPFFSEQ QTNSRYACTTWGIGMEVNHDVKREEITTLVNEMMKGEKGEEMRKKGLEWKKKAIEATGLGGSSYNDFHKFIKETLHHNAI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	5	472	468	2.13E-125	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	6	458	453	6.87409E-78	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	7	464	458	3.6E-144	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	162	404	243	1.1E-29	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	276	455	180	3.6E-144	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	296	438	143	5.8E-21	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00375 View details on PS00375 Search for proteins/transripts with this domain View external data on PS00375	357	400	44	-	IPR035595 Show description in modal box View details on IPR035595 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0091200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…