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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0098900 |
| Transcript ID | LotjaGi3g1v0098900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box-like protein; TAIR: AT5G07670.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8VYT5|FB254_ARATH F-box protein At5g07670; TrEMBL-Plants: tr|A0A072UUZ8|A0A072UUZ8_MEDTR F-box plant-like protein; Found in the gene: LotjaGi3g1v0098900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12317654..12321018) extracted from Lotus japonicus Gifu genome v1.2.
GCTATTTCCACACCCAAGCCGTCACATAGCAAAATCTTTAGACAAGAAAAACAAAAAGCAAATTAAATGATTGGAAAATA ATCAAAATTGAAAAGACCCACAAATCTTCCATGTTAATGTTACTATAAGATTGAGCATAGCAAGCAAGCAATGCAGAAGA AACCAGAACAAGACCCTGTTCCAGTGTCACACTTCATATCGGAAATGCCAACCACAAACGATGTCGTTTCAACCCAACCA CCACAACAACAACCCTAGCCTCCCTCCTCCGCCACTAACCACCGTCCTCACCACCGCCAAACCTCTCAACCACATGCTTC TTCTTCCCATGCACCTTCACTCCCTCTCTGACCCCAAATCCAAAACCCTAACCCCCAATTTCACCACCACCATGGACCCA ACCCTTCTCCTCTCCGACGAGCTTCTCCTCCAAATCCTCGCCAAGCTTCCCAATTCGCCGAGCAACCTCTCCAATTCCCT CGTTTGCAAGCGCTGGTTGAATCTCCATGGCCGTTTGGTTCGCTCGCTGAAGATACTGGATTGGAACTTCGTTTCCTCTG GTAGGTTGACTCACAGATTCCCCAATCTCACGCACGTTGATTTGGTTCCTGCCTGTTTCCACTCGCCGCGAAACGCCGCC GCCGCCGTTTTCCTCAGCCACCGTGTCGCCTCGATGCGGGTCGCTCCCGGGTGGTGCTTCGGCGAGGATAATATACTACC TGCTGAAGTCATCGACGGCGGGCTCAGAGTAATTGCTAACGGGTGCCCGAATCTACGGAAGCTCGAGGTGGTTGGAGCGA GCGAAGCGGGGTTGGCTTGCGTCGGCGAGGAGTGTTCCACGCTGCAGGAGCTTGAGCTGCAGAGGTGCGACGATGAGGTT TTGCGCGGGGTTGCGGTGTGTAAGAATTTGCAAGTTTTGAGAGTGATTGGGAGTGTTGGTGGGTTCTATGATTCCGTGGT TTCGGACATTGGGTTGACGATTTTGGCGCAGGGTTGTAAGAGGCTGGTGAAGCTGGAGCTGAGCGGTTGCGAAGGGAGCT TCGACGGGATCAAAGCGATTGGGCAGTGTTGTGTGATGTTGGAGGAGCTGACTGTGGTTGATCACAGGATGGATGGTGGG TGGTTAGCGGGGCTTTCGTTCTGCGAGAATTTGAAGACGCTGAGGTTTCAGTCGTGTAAGGCGATTGATGGCAATCCAGG GATGGAGGAGCATTTGGGGTTCTGCCCCGCGCTCGAACGGTTGCATTTGCAGAAGTGCCAGTTGCGGGATAAGAACGGCA CTGGAGCTGTTTTCTCTGTTTGCAGAGCTGCCAGGGAGGTCATTCTTCAGGACTGCTGGGGGTTGGATAATAGTGTGTTG AGTCTCGCAATCATTTGCAGGTAATGTGGAATTTGTAATTAGAATTGGAATGTGATTGAGTAGATAGTTTAATTACGCAT TTATGACGATAAGCGCTTAAGCTAATTTGATAAGCTTATTGAAATTAGGTCAAATTAGGTTATAGGTAGGGTACAAGTGT TTATCCATAAGTTAATCTAAGCGGCTTGTGAAAATAAGTTCAAAACATCTTATAGGTAGGTCATAGTACTATTTAGGTAA GCTCTTAAAAACACTTGTGTAAGTGCTTTTACGATTGCATAAACTCAAATAAACTCTTCCAAACAGTGTCTTGGTCGATT TTGAAATTTGCATGTTCACGTCGGTATAAAAGTTGCTTTCTTGCATCACCACCATTGGCAAACTTAAATTTCATATTGGA GCAGTTCTTATTTATGCACTTTCCCTTGTAGGAACAAAATAACCAATCAAAAATTAAAGGTATATTAAATAGTGGTAAAG AGATGTCAAAGATTGTCATAAGACTATATTGATGGAGTATTATTTTCAGCTTTTGATTGGTTTTGTTCATTAAATACTGA GGTGATGTAACATTTTTGGGTTCAATGTGGTCCAGGTGTTGTGGTGGTTGTGGTTGCATATTTGATATTTGCCTTTTAAA AATGTTCAATGGGGGCACCTTATGTTTTAAAACTTCATTGTTCCTTGTATATCTTTATTACATGTTTAGAGGTGGTTTTG GTGTCCTTAGTTGACAAGTTATGAGGAAGTACTCCAATGTGTTGTGAAGTTAAATAATGGTTGTTAACTTGTTATCACTG TACTTTCCAGGCGGGTAGAATTGTGTTACTTAGAAGGATGCTCATTGCTTACAACGGAAGGTTTGGAGCTGGTAATAGAT TCTTGGAAGGAGCTTCAATGCCTTAGAGTTGTCTCGTGTAAAAATATAAAGGATAGTGATATCTCTCCTACACTCGCAAC CTTGTTCGCCACGCTCAAAGAGTTGAGATGGAGGCCAGACACAAAACACCTTCTGTCATCAAGTCTTGAGGAGATAAGCA TGGGAAAGAAAGGTGGTAAATTTTTCAGGCTATGAATCTTAGAAACATAATTTCTCACTGACTGGGTGAAATTTGTACCA TTATGTAATCACATAGATTAGTTTAGATGGTTATTAGATATTGACAGTGGACAGATTATTCCTTACATCCTTTACCTAGA GATGTAATTATGTGCTAGGTTAGCCCAATTCAATTGGGTTACTTTTTCTACTTCTTTGATGGTAAACATCAGAATAAGGA ATCAGAGTAGAGATGTAATTACATGTAAGCAAAACTCAGTTTACTCCAAGAAGAAATTGAAAACCTTTGTTATGCTTCAC TTTCATTTGCCACGGTACAGGCTTCTTTCTTTCTTTTATTATTTTTGTTGAAGATCATTAAATTAAAACTGGAAGAATGA TGATAGGGTCAGGCCAGCTATCACTAAGGTCTACCATAGGAACGTAGACAGGGTACTGGGATAATAATCCCTAGGGATGT TAGTTGTCAAGTGTTAGTTGTAAATGTAACTAACGAACTGATATCAGATATAAAACAGTTAAAACAGTTAGGGAAAGGGG AGGAAATTGGTTACCATTTACCTCTATCTTGTTCATGCTTTGTTCTTCCTTAGTTGAGGAAATCAGGTCAATCAATAAGA AATCACTGTTCATTCTTGCTTGAATCTATCAATTCGTATCAGAGCTTCATCCAGGAGTTGTGGTATCAAATCGTTTATGA GTTGTGGTATCAAATCGTTTATGGTCAAGAGAACGAGAAAGGAGGCGTGAATCGATCGGGTGGAGTCGCAGTGTTGATTC ATGATTGGGAAGAGGAAAAGTAGAATTGAGCGTTGGACAAAGCTCACAATGAAGAGCGATTTTGAAGAATGGAGGTATTG ATCGAATCGATGGTGAAAACTCTGGTGGAGTTCGAAGATCAAAACTGGTGTGGGATGCGACAGAGGCAGAGGCGGTGGAT AGTGG
CDS sequence (LotjaGi3g1v0098900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTTCAACCCAACCACCACAACAACAACCCTAGCCTCCCTCCTCCGCCACTAACCACCGTCCTCACCACCGCCAA ACCTCTCAACCACATGCTTCTTCTTCCCATGCACCTTCACTCCCTCTCTGACCCCAAATCCAAAACCCTAACCCCCAATT TCACCACCACCATGGACCCAACCCTTCTCCTCTCCGACGAGCTTCTCCTCCAAATCCTCGCCAAGCTTCCCAATTCGCCG AGCAACCTCTCCAATTCCCTCGTTTGCAAGCGCTGGTTGAATCTCCATGGCCGTTTGGTTCGCTCGCTGAAGATACTGGA TTGGAACTTCGTTTCCTCTGGTAGGTTGACTCACAGATTCCCCAATCTCACGCACGTTGATTTGGTTCCTGCCTGTTTCC ACTCGCCGCGAAACGCCGCCGCCGCCGTTTTCCTCAGCCACCGTGTCGCCTCGATGCGGGTCGCTCCCGGGTGGTGCTTC GGCGAGGATAATATACTACCTGCTGAAGTCATCGACGGCGGGCTCAGAGTAATTGCTAACGGGTGCCCGAATCTACGGAA GCTCGAGGTGGTTGGAGCGAGCGAAGCGGGGTTGGCTTGCGTCGGCGAGGAGTGTTCCACGCTGCAGGAGCTTGAGCTGC AGAGGTGCGACGATGAGGTTTTGCGCGGGGTTGCGGTGTGTAAGAATTTGCAAGTTTTGAGAGTGATTGGGAGTGTTGGT GGGTTCTATGATTCCGTGGTTTCGGACATTGGGTTGACGATTTTGGCGCAGGGTTGTAAGAGGCTGGTGAAGCTGGAGCT GAGCGGTTGCGAAGGGAGCTTCGACGGGATCAAAGCGATTGGGCAGTGTTGTGTGATGTTGGAGGAGCTGACTGTGGTTG ATCACAGGATGGATGGTGGGTGGTTAGCGGGGCTTTCGTTCTGCGAGAATTTGAAGACGCTGAGGTTTCAGTCGTGTAAG GCGATTGATGGCAATCCAGGGATGGAGGAGCATTTGGGGTTCTGCCCCGCGCTCGAACGGTTGCATTTGCAGAAGTGCCA GTTGCGGGATAAGAACGGCACTGGAGCTGTTTTCTCTGTTTGCAGAGCTGCCAGGGAGGTCATTCTTCAGGACTGCTGGG GGTTGGATAATAGTGTGTTGAGTCTCGCAATCATTTGCAGGCGGGTAGAATTGTGTTACTTAGAAGGATGCTCATTGCTT ACAACGGAAGGTTTGGAGCTGGTAATAGATTCTTGGAAGGAGCTTCAATGCCTTAGAGTTGTCTCGTGTAAAAATATAAA GGATAGTGATATCTCTCCTACACTCGCAACCTTGTTCGCCACGCTCAAAGAGTTGAGATGGAGGCCAGACACAAAACACC TTCTGTCATCAAGTCTTGAGGAGATAAGCATGGGAAAGAAAGGTGGTAAATTTTTCAGGCTATGA
Protein sequence (LotjaGi3g1v0098900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFQPNHHNNNPSLPPPPLTTVLTTAKPLNHMLLLPMHLHSLSDPKSKTLTPNFTTTMDPTLLLSDELLLQILAKLPNSP SNLSNSLVCKRWLNLHGRLVRSLKILDWNFVSSGRLTHRFPNLTHVDLVPACFHSPRNAAAAVFLSHRVASMRVAPGWCF GEDNILPAEVIDGGLRVIANGCPNLRKLEVVGASEAGLACVGEECSTLQELELQRCDDEVLRGVAVCKNLQVLRVIGSVG GFYDSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCVMLEELTVVDHRMDGGWLAGLSFCENLKTLRFQSCK AIDGNPGMEEHLGFCPALERLHLQKCQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLL TTEGLELVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELRWRPDTKHLLSSSLEEISMGKKGGKFFRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 38 | 453 | 416 | 1.1E-29 | ||
| PANTHER | 42 | 473 | 432 | 9.6E-228 | – | |
| PANTHER | 42 | 473 | 432 | 9.6E-228 | – | |
| SUPERFAMILY | 58 | 108 | 51 | 3.27E-5 | ||
| SUPERFAMILY | 100 | 237 | 138 | 4.16E-7 | – | |
| SUPERFAMILY | 247 | 445 | 199 | 2.59E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0098900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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