Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0102300 |
| Transcript ID | LotjaGi3g1v0102300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein kinase ATM; TAIR: AT1G48560.1 hypothetical protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A0S3SJ49|A0A0S3SJ49_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0102300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12702480..12705808) extracted from Lotus japonicus Gifu genome v1.2.
AAAATACAATCCAAATGAAAAGAGAGGGAAAAACAATGAAAATACCGCCATGGAGGGACACAACAATGGCACACATTGAT ACGACCACCATGAATGGCGGCACCACCACCACCACCACCACCACCGTAATCAAAAGAGGCGACATAGTATGGGCCATGCT CCACTTCCCTCACACCTGGCTCCCCGCACTCGTCCTCTCCTCCTCCGAACTCGCCGTCACCGTCTCCTTCTTCACCACCA CCACCACCATCCCCCACCGCACGCATTTCACCGAATCCGAACTCCTCCCCTTCGAACACGCCTTCCCTTCTCTCGTCTCC CCTCACATAAACCACGCCGCCGGACGCGACACCTTCCGCGCCTCACTTCACTCCGCGCTCAGGTTTTTCGGCCTGAGCGT CGTTTCAGGTTTACAGTGTCGTTGCCAAACGGGTTCGGAACTAACCGGGTCGGGTTATCAGTTTGACCCGAGTGCGGTGC TCGCGTTTGTTCTGGACGCTGCTGTTTCGCCTTGGGTTGAATCCCCTCGTCTCGTTGATGCCGTTAGGGTTGTTGCTCAG ATTCATGCTTTTCGTGGCTATTCTTCTATTCAGCAGAAGAGAGTGTGCAGAGAAAAACGAAAACTAGGTAAAAAAAAATT CAATTTTTATTTAACATGATAGTTGAGGGTTTGAGAATTGGGGGTGATAATCTGATAGAATATTGGAGTTTGGCCCCGTT TGGAAGAACTTATTTGAGCTTATCTGATAGCATAAGCGCTTGTGTATGTGTTTGGGAGAGCTTATGCAAACAGCTTATGA TCTACCATATGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAAAAGCTTATGCTTATATATAGC TTATTTTCAATTTACTTCTATAAATTTTTTAAAATAGCTTATATCATAAGCGCTTAATTAAGCTGTTAACAGTAGTATGA TTCTCTATTGTTAGTAAAGTTTGAGTGTTTGAGGAGTACTAGGCAGTATGCATTGTGATTTTGATAGGTTGCTGAAAAGG GCAATGATTTTTTTTTCTCCCTAAATTGAATTTTAAGATTGCTAAGGTTTTCTTCAGTTTTCATAATTCTGTATCTGTAA ATTTTGGAGAAAATCTGAATTCATTTACATGGTGTGCTTCAAATTGTTCATATAGATGTTGATTTGCAGACCAAAGGCAA AAAGATGCAGTTTGTGGTTGTAAAACTAGGAATCCTATGATCACTTAAGCTGCTCTTTTAGAAAATATTTTTAGAATGTC ACCTAGCCTTGTGTGCTTATTTTTCCTATTTTAAGTTTTGAGAGAAAAATAGGAAAAAAATGTCTGAGAGCAGTTATTCT ATGGGGGAGTAGGTAAAATGGGGAGTTATGAAAATTTTCTTGCTATTTTGATTGTTGCTGTGAATTGTGATGATCATCTG TAGGTTGAAATGAAAAGTATTCTAATATATGACTTTGTTAAGTTAATGTTTACCATTTTCTTGACATAAATAAGATATCA GTCCCAGAAGGTGAATAGTATCTAGAAGTTTCAAACTTCTATTTAAATCCTTATGTTAACTGTCCCAGTGTTGCTGTTCT AGTGGAAAAAAAGGCTTGTTATTGTTATTGTAGTTGTTGTTGAGTACACAAATTCCAATGTACTGAACTACATAAATTTT ATCAGCAGGTGATAATATGAAGCAGCATCAATGTTCATCCTTGGGTGAGAAAACGCGCTCAGTTACTCAAGAATCTGTTA GTTTGGAACCCAAGGAAAAATGTCAGATCATATCCAAACAGGGGGAGAAAAACATGGCCATTGGTGCTATGAAAAGGTTG AACTCAACAGTTTCTGTTTTGGAAGAAAATTCTGAACACTTGTTTCAGAATAAACTTCTGATTATTCCAGAGGCTCCAAC TATCAATGAGAAGGCTGAACTCATTATGCACTCTCCTTCTTTAGGTCCATTCTACCTGGTGGGAGAATTCCTAAAATCTG CAAGACAGAGTCCTCTTACATTTAAAAATAAACCAGACCAGGGAATCGTTGATATCAGCTTTGGAAACTGTTCCCCGATG AGTAAAATTCGCTTCTCTGTTTCTTCCAATTTTATGACTCATTTGAGCAACTACATTAGTAACAGAGAGGACAATGCACC TGGGCTTTGCTGCAGATTTTCTGATATAGAAACCGTTATGTACCTTAACAGGAAAAGAAGGCGACTGGATAAACCTACTT TATGCCATGTTTTTCCTCATCAAATTGGCATGGTTCAAGAAAGTGAAGGAAATGCATATAACTCAAAGTACACCAAACCT AGGATCTCTGACATCAAGATGCTTGAACCAGAAGAAAGTATTCAGAAAGATACTCAGGCTTGCTTACGCTTTTGTGAAAC TAACATGAATATCACTGATGAGGTTCATAATTTGACTTTACAGCAGTCTCTTACTTGTGAATCATCATCTAACTTGCAGC TTGGCTTACACCCTCATACCTGTAAGGTTGGTCCTGGTGCAGCAAAAGTTAAGTATATATTCGGATTTAACTCTTCTGAT TTCCGGAAGAGGCTGCAAAAAAGTTGCTTTGGTGATATCACACCTCTTAAGTCCCAATTGTCTGCAAGAGAAAAATTAAC TTCTGGGGATTTTCTGGTGAAGAGAAAAGATAGCTACCCAGACTACGCTCCTTGTTCAGTATTCAATTCGAAAGCTGGAC ATCAATCAAAAACCAATGTCCCATTTTGTTCTACATCATTGCACATGAAGTTCCCCAAGAATTTCAACCTACCAACGAAG GAACTACTGATAAGAAAGTTTAGTATTTTTGGCTCAGTAGATTATTTAAAAACCAGAGTCTCTTACTACACTGGTTCAGC TCAGGTTGCTTTTTTCCAGCAAGGTGATGCAGTTGCTGCATATCGATATGCCAAAAAGAAGGTCTTGTTTAGTGATGCTA ATGTCCGGTTTTGGCTTGATCCTTTTGACCACAAAAGAATAGGATTCGAGCGTTTTTCTCTCATGCCCCCATCATCAAGC AAACCAACAGGACCACCACTGAAATCATGTCTGAAAAAATCTAATTCCTTGAGGCAGGAAAACAAAAAGAAAAATCAAAG GGTAAGATTTACAATAGAAACTTGACACAGATTTACTGTATGAAGGATGTTGTACCCTAGTTATGAAGGGGTTTTGTGCT TATCTTTGTTCCATTTTATCGCCGTGGACAACCAAAGTTAGAAGCTTCTTCTAATATGCAAGTACTGAAAAACTAGAATG ACAGGTCCCAAAATGTACCAAATTGTGCCGCTACTTATGTAGGTTGACG
CDS sequence (LotjaGi3g1v0102300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGAGAGGGAAAAACAATGAAAATACCGCCATGGAGGGACACAACAATGGCACACATTGATACGACCACCATGAA TGGCGGCACCACCACCACCACCACCACCACCGTAATCAAAAGAGGCGACATAGTATGGGCCATGCTCCACTTCCCTCACA CCTGGCTCCCCGCACTCGTCCTCTCCTCCTCCGAACTCGCCGTCACCGTCTCCTTCTTCACCACCACCACCACCATCCCC CACCGCACGCATTTCACCGAATCCGAACTCCTCCCCTTCGAACACGCCTTCCCTTCTCTCGTCTCCCCTCACATAAACCA CGCCGCCGGACGCGACACCTTCCGCGCCTCACTTCACTCCGCGCTCAGGTTTTTCGGCCTGAGCGTCGTTTCAGGTTTAC AGTGTCGTTGCCAAACGGGTTCGGAACTAACCGGGTCGGGTTATCAGTTTGACCCGAGTGCGGTGCTCGCGTTTGTTCTG GACGCTGCTGTTTCGCCTTGGGTTGAATCCCCTCGTCTCGTTGATGCCGTTAGGGTTGTTGCTCAGATTCATGCTTTTCG TGGCTATTCTTCTATTCAGCAGAAGAGAGTGTGCAGAGAAAAACGAAAACTAGGTGATAATATGAAGCAGCATCAATGTT CATCCTTGGGTGAGAAAACGCGCTCAGTTACTCAAGAATCTGTTAGTTTGGAACCCAAGGAAAAATGTCAGATCATATCC AAACAGGGGGAGAAAAACATGGCCATTGGTGCTATGAAAAGGTTGAACTCAACAGTTTCTGTTTTGGAAGAAAATTCTGA ACACTTGTTTCAGAATAAACTTCTGATTATTCCAGAGGCTCCAACTATCAATGAGAAGGCTGAACTCATTATGCACTCTC CTTCTTTAGGTCCATTCTACCTGGTGGGAGAATTCCTAAAATCTGCAAGACAGAGTCCTCTTACATTTAAAAATAAACCA GACCAGGGAATCGTTGATATCAGCTTTGGAAACTGTTCCCCGATGAGTAAAATTCGCTTCTCTGTTTCTTCCAATTTTAT GACTCATTTGAGCAACTACATTAGTAACAGAGAGGACAATGCACCTGGGCTTTGCTGCAGATTTTCTGATATAGAAACCG TTATGTACCTTAACAGGAAAAGAAGGCGACTGGATAAACCTACTTTATGCCATGTTTTTCCTCATCAAATTGGCATGGTT CAAGAAAGTGAAGGAAATGCATATAACTCAAAGTACACCAAACCTAGGATCTCTGACATCAAGATGCTTGAACCAGAAGA AAGTATTCAGAAAGATACTCAGGCTTGCTTACGCTTTTGTGAAACTAACATGAATATCACTGATGAGGTTCATAATTTGA CTTTACAGCAGTCTCTTACTTGTGAATCATCATCTAACTTGCAGCTTGGCTTACACCCTCATACCTGTAAGGTTGGTCCT GGTGCAGCAAAAGTTAAGTATATATTCGGATTTAACTCTTCTGATTTCCGGAAGAGGCTGCAAAAAAGTTGCTTTGGTGA TATCACACCTCTTAAGTCCCAATTGTCTGCAAGAGAAAAATTAACTTCTGGGGATTTTCTGGTGAAGAGAAAAGATAGCT ACCCAGACTACGCTCCTTGTTCAGTATTCAATTCGAAAGCTGGACATCAATCAAAAACCAATGTCCCATTTTGTTCTACA TCATTGCACATGAAGTTCCCCAAGAATTTCAACCTACCAACGAAGGAACTACTGATAAGAAAGTTTAGTATTTTTGGCTC AGTAGATTATTTAAAAACCAGAGTCTCTTACTACACTGGTTCAGCTCAGGTTGCTTTTTTCCAGCAAGGTGATGCAGTTG CTGCATATCGATATGCCAAAAAGAAGGTCTTGTTTAGTGATGCTAATGTCCGGTTTTGGCTTGATCCTTTTGACCACAAA AGAATAGGATTCGAGCGTTTTTCTCTCATGCCCCCATCATCAAGCAAACCAACAGGACCACCACTGAAATCATGTCTGAA AAAATCTAATTCCTTGAGGCAGGAAAACAAAAAGAAAAATCAAAGGGTAAGATTTACAATAGAAACTTGA
Protein sequence (LotjaGi3g1v0102300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKREGKTMKIPPWRDTTMAHIDTTTMNGGTTTTTTTTVIKRGDIVWAMLHFPHTWLPALVLSSSELAVTVSFFTTTTTIP HRTHFTESELLPFEHAFPSLVSPHINHAAGRDTFRASLHSALRFFGLSVVSGLQCRCQTGSELTGSGYQFDPSAVLAFVL DAAVSPWVESPRLVDAVRVVAQIHAFRGYSSIQQKRVCREKRKLGDNMKQHQCSSLGEKTRSVTQESVSLEPKEKCQIIS KQGEKNMAIGAMKRLNSTVSVLEENSEHLFQNKLLIIPEAPTINEKAELIMHSPSLGPFYLVGEFLKSARQSPLTFKNKP DQGIVDISFGNCSPMSKIRFSVSSNFMTHLSNYISNREDNAPGLCCRFSDIETVMYLNRKRRRLDKPTLCHVFPHQIGMV QESEGNAYNSKYTKPRISDIKMLEPEESIQKDTQACLRFCETNMNITDEVHNLTLQQSLTCESSSNLQLGLHPHTCKVGP GAAKVKYIFGFNSSDFRKRLQKSCFGDITPLKSQLSAREKLTSGDFLVKRKDSYPDYAPCSVFNSKAGHQSKTNVPFCST SLHMKFPKNFNLPTKELLIRKFSIFGSVDYLKTRVSYYTGSAQVAFFQQGDAVAAYRYAKKKVLFSDANVRFWLDPFDHK RIGFERFSLMPPSSSKPTGPPLKSCLKKSNSLRQENKKKNQRVRFTIET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 504 | 471 | 1.5E-231 | – | |
| PANTHER | 34 | 504 | 471 | 1.5E-231 | – | |
| PANTHER | 455 | 689 | 235 | 1.5E-231 | – | |
| PANTHER | 455 | 689 | 235 | 1.5E-231 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0102300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…