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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0107400 |
| Transcript ID | LotjaGi3g1v0107400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dentin sialophosphoprotein-related, putative isoform 1; TAIR: AT3G12320.1 hypothetical protein; Swiss-Prot: sp|Q9LHH5|LNK3_ARATH Protein LNK3; TrEMBL-Plants: tr|A0A0B2NXT6|A0A0B2NXT6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0107400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13248540..13253732) extracted from Lotus japonicus Gifu genome v1.2.
ACTACAGGTTGCTTAGTCATTTTGGGACACCACCTTCCTTCAACTTGAAACATCTTCACCTTTTAAAATGATTTTTATTC TCTATTCAAACAAATAAATACAAACTTAGCCAAATCTAAATCCAAATCCATAGCCGCCTCTGATTTTTCAGCTGTTTGCT TTGTTGAATACACTAAACTCAACTTCAAGTTGTGTTCATTTGTGACCATTTTGTTTTTCATCAATTTGGAAACTGGTTTG GTTCTCTTTCTCTTTGCACATAAGGTATGATTCATCTCCTTCCACTTTAATTTATGTTTTTTAAATGTTATTATATTCAT ATATTTGCTTGCTGGTAGTTTTTTGGAGTGTGATTCATGTGCTGAACTCTAAGGATGATTATGAGTGGACTTTGTAGTTT TGAAGAATCTGTGGGCTACTGAGGATAGATATCAAGTTAAAACCTTCTTTTTGTCCTGATTTGTGATTCTTCAAGTTTTA TCAGAGAACATGAATTGTCAGTTTTATTGAAAAGTTAGTATCTCCAATGGTAGGAACTTATTTTGGGACTTTACTCATTT TTTGTGGGTTCAGATTGTCACATAGGATTTAAGACACTTATAAGGTCTCTATGCACATTTCACTCTAATGGTTGAGATCT TATTTTACTTTTGACCGGACCCACAATACCCAATATATTTATATTATTTATTTCCCTCCTTATTTTTCACTTTGGTTATG GTATTGGAGAAGAGAGAAAAAAATATTATTTTATTTAAGATCTCACATTTGAGAGTACCTGAGCTAAGACACGAATCTTA GCTTTTGCTAAGATTTCATGCCATGTAGGATAGCTCCAATGGTGGGATCTAATAAGATCTTATTTTAAGATCTCAAAATA AGGACTCCATTGGAGATGCTCTAAGAAACTATGTTATATGAATGATGATCTTTACATAGGATAGGATATTGCTACTTTTC CCCTGCAACCATGCTAATTAAAGGAAACAAATATATACATGTTATCCAATAGCTGGTGGTGTAACTATGCATGCTTTAAA TATACATAACATATATAAGGTGTTGTTGATAAGTCTCATATTAACTAGAGATATGCCCAAAATAGAACTTATAAAGGCTT TGGAAATCATTACCTTACAAGCTAGCTTTTGGGTACAGAGTTAAGCCCGACCGAATTCTTATAAAAGGAACATCAGATAT TGAAATAATTCTTTCATGCTAATCAAATAGCGCTTATGTCTACAGTACCAAATTATGCACATTTCTTATTTGTGAAGGCC ACTTTCTAGTTTCTACATGCTAATGTTCATTTTTTAACTCGATGTGCAGAAACAGGTCATGGATTGCTACTATGGGAGCA GTGTTAATGATTTTCTAGTTCTGAAGGATGAAGTTTTACTGGACCGGTATCCTTCCCCAGACTATTGGTCAAACTGGGGA ATAAGTGCAACTGAAGGTTTTTATTCACCTAACCATTTTCTTATGAAGGATTTCACTGATGAAAGTTTCAATAATCAAAT TGAGCTTGAATCATTTCTGAATGATAAAGATCAATCTAGCAGTTCAAGTGCATGCGGGGGATTGCCTGAGCAATCTTTTC AACAGACAACATTTTCATGTGATCAGCCTAATTACCAGCTTCAAGATCTTCCAAGATTCGAACGGATGGATGACATTTTC TTGTACAAGCTTAACCTCTGGGATTAAGATACTTGATTTTGTTCACCTAGGATAATCATATAGCTTCTGAAATGATTTAA TTGTCAAAAAAAGTATACTATGCATTTAGGAAATCCATGCAAATTGAATTGATATGTGGTGTTTGCATAGTCAACTTCTT CATATTTATCTTTATGATTGGAACTGATACAGCCTATGCATTTGGACAGCGCTTATGGCAAATTTTGGTAGTAATATTTC TATTCAGATGGAAAATGCAGTCAGATTTTTGGGGTAGTGTAATTCATAAGCTAATTTGAGAAAATAATTGAAATAAGTAT GTTATAGGTAAGCATAAACCCTTATTCATAAGCTAATATGAACAACTTATGAAAATAAGCTCAAAACAGCATATAGGTAG GTCATAAGCTATTTGCATAAGCTCTCTTAAAGACTTGCGTAAGTGCTTATGCTATAAGGTAAGCTCAAATAAGCTATTCC AAACGGAGCCTAAGAGAATCATGCTCATGGTTTTGTATACCCTATTGCATGAACCTCTAAATAGCATGCTAAGGGCTCCA ATTTAGTTACCTTGATACAGTACAAATATGGAAGGTCTTACTTTTCACCTCTCTTTACACATGTAACACAACAGAGCCAT ATATTATTCACTGGTTTACCATAGACATATAGCTAATCTAATTGAAATGAATATCTATTGATGTTAAAGACTTACAGCAT TCACTTGTTTAACATAATTCAGGGAAACTATTCCTGAGGATCCACCCTGTGTTGAAATCCTAGACAAATCCGTTAACTTT TCACCTGAAAAACGATGCAGCAATACACCTGGTGATCATTCTTTTCTAGAGATTCATTTAATTTGAACAAGTATTCTAAG CAATATCATGGTTCGATATCAAATTATTTTACGCCTTGTTTCCATCAGGTGGATTGCAAAAAGATATTGCAGCTTCAAAG TTTGATTCGTCTAACTCAGAATCTAAAGATTGCCTAGATATAGAGGTGAGGATTGCTTTATGTTGAGTATTCTAGTTGCA GTTATATCTATCATGAAGACATCAGAATTCAGAAGTTTATTGTTAGCTATTTGCATGCCGCTTACTGGAGTAATTTTTGT ATGCATTAGTGTGATGATATTCTTCTTTTGGCGCCAACTTTTTCTGTATTAAGTGATTGCTTAAGTATCTGGTGGTCAAC CAGACCTGTTTGTGTGAACTCTCAAGGACCTATTCTCATGTGTAGTACTAGTACTATAAACTTTCATGCTTGCAGCAAAC ATATAGTGAACATTAATGTTTCTTCTGTACATCTCATTTTTTTAATGCTCAGCTCCTTCAAGGTTTTTATAGGATTTCAC TTACTTGTTTTATCCAACTTCAGGTTCCCTTATTTCCTTTTTTTTGGTTTAGTGTGTTATGTGTCTTAAATGATTTTTCA TCTGTTTTTGTATAGATAGCAAAGTTCATCTGTTGGGTGAGGCCATAAATTATTTTCTTTTTAGTGATAGTTTGGGAGAA ATAAAATATGTATCATGATTGGATTATTGGAAATAGTTATTAAAAACAGTAGAGAAAGCTTTCTTACTAGTTTAAATGCC AGGAATATATTTTTTGCTTTAAAGGCTCACAATGTAACTTAATCTATCTGATTTTTCTTCAAGCCACCGCCAGTCAAAAG CTTGGATTCACATGAAGAATTCATCTTGAAGGATCTTCAGATGGTAATTGGACAGGTGAAGTGACTGAAAACTCAAATCC TTGGCATATGATTAATTGTGTTAGAAAATTATAATATAAAAAATTCACATGTCTTCACTCAATAGTTCAAGTTTCTGGCA AAGTAGGTATCAGAGTCTCTATAACCAAGTGGTGTAGAGTTCGATTTTGGCTGCCCTCATTGTTCTAATAAAAATAAGTT GAGTTTCAGCTTAAGGTAGGTATGCCTATTCATTTCCCACGATTCAATTCTAATGAACTATTGCGTGAGAAGGTGTGTTA GAAATATAATATAAAACCATCCACCTGTTTCCACCCTATATCTTAAGCTTCTGGGAATTGGTTCATGACAAACTGCAAAC ATAACTTTTGATAATTTCATTGTTTCACATGACAAGTTCACTGAGGGGACCCGTTTTGGCTTCCGAGATGCCTTGTACCG TCTCTCTGGATACACTGAACAACAGCAAGTGCTGCAGGACAAGGATGCAGATCCTAACACGCAAAAAGCAACGCTACACA CGGATGACAATGAAACAGTGAGGTACATGATTTAGATTGGCTGCATTTCTGTCATGTTATTTTCTACTTTATCAGATGCA TGATTAATTGCTAATGATGAAACAGTAAGGATTAATGCAAAGGGTAGTTTACAATGTTATTTAACTGATGCACATCTCCA GAACTTGTATGAAAAATACAAAATATTGCTTCTGGGTTTGACTTGAAACTCAAGAACATCATTATTATTGCATTGCTCCG ACACTTTGGTTTTCAGCATGAGTCATTGAACACACTTGCTGATGCAGTGCTCCTACTCTCTGGGTTTGAGCATGAATCAT GATTTTATTGATGTTTTAGACATCCAATTTTAATTTCATTAAGACTATATTCTAGTTAAATGAGCGGGTTCGGTGCTGCT TATACGATTAGTTACTAAAATCGGATCAGGCTGACTGATTCTACTGGAAGTCGAACCTATGGCTGGTCCAGTCGTGAATT TGGGTCAACTCTTCTGGTAAACCGGATTGAACCAGTCATAATTTGAGTGATTCAGTTACTTACCATCAATTAGTGGGATA AGGCTTGTTGTATATTAACGAAAGCCAGTCCGATCATTGACCGAGTGATTCAGCACATTGATCGTGTAAATAACCAGTTT GGTTTTAGTAACACTGATTATGAGTGCTTTTGATTCAAATGTTAACTTGCTTTCAGGTTTCAGAACAACAAATCACTGGA ATCAGAGACCAACAGTACTGACAGATTAATTGCAAAACTTATGTTCAACAACATGGAGTTTAACATGAATGGTCATCAGT AAAGCCATGAAACAAGTAATTGGAAGTGAAGGTCCACATGGAAAATGCTCATGAGCCTTGAATATGGCACAAAAGCTTCA TTATCCTCACCCTTAAGAGTTACTAGCAGATGCGACGTTCCAAGGTTTGGACTAGGTAACCAGCAAAGAGACACAGGTTC ACACATGGCTTGTGGAGAGTCCGTTTGGATACAGACTTATTAGAGCTTATCTACTAAAGCAAGTATTAGATAAGCTCCGA TAAGTGCTCTTTAGCTTTTATCCAAGCGGGTTCGTAATGTAATTTTGAGCTTTCTATAGGTTGTTGCTAAAAGAAATTCT GTATTTTTCAGTGCTACTGTTGTGCTTTCTATGATCTGCGTGTATGCTTTTGCATCTGGATTACATGCTCAGTTTTGTTT GTAATGTAAATGAATAAATTGATCAACTTTGTTGGGTTTGGACTCAGTGGTGTTTAACACCTTGATACTCTGC
CDS sequence (LotjaGi3g1v0107400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGCTACTATGGGAGCAGTGTTAATGATTTTCTAGTTCTGAAGGATGAAGTTTTACTGGACCGGTATCCTTCCCC AGACTATTGGTCAAACTGGGGAATAAGTGCAACTGAAGGTTTTTATTCACCTAACCATTTTCTTATGAAGGATTTCACTG ATGAAAGTTTCAATAATCAAATTGAGCTTGAATCATTTCTGAATGATAAAGATCAATCTAGCAGTTCAAGTGCATGCGGG GGATTGCCTGAGCAATCTTTTCAACAGACAACATTTTCATGTGATCAGCCTAATTACCAGCTTCAAGATCTTCCAAGATT CGAACGGATGGATGACATTTTCTTGGAAACTATTCCTGAGGATCCACCCTGTGTTGAAATCCTAGACAAATCCGTTAACT TTTCACCTGAAAAACGATGCAGCAATACACCTGGTGGATTGCAAAAAGATATTGCAGCTTCAAAGTTTGATTCGTCTAAC TCAGAATCTAAAGATTGCCTAGATATAGAGCCACCGCCAGTCAAAAGCTTGGATTCACATGAAGAATTCATCTTGAAGGA TCTTCAGATGGTAATTGGACAGTTCACTGAGGGGACCCGTTTTGGCTTCCGAGATGCCTTGTACCGTCTCTCTGGATACA CTGAACAACAGCAAGTGCTGCAGGACAAGGATGCAGATCCTAACACGCAAAAAGCAACGCTACACACGGATGACAATGAA ACAGTGAGGTTTCAGAACAACAAATCACTGGAATCAGAGACCAACAGTACTGACAGATTAATTGCAAAACTTATGTTCAA CAACATGGAGTTTAACATGAATGGTCATCAGTAA
Protein sequence (LotjaGi3g1v0107400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCYYGSSVNDFLVLKDEVLLDRYPSPDYWSNWGISATEGFYSPNHFLMKDFTDESFNNQIELESFLNDKDQSSSSSACG GLPEQSFQQTTFSCDQPNYQLQDLPRFERMDDIFLETIPEDPPCVEILDKSVNFSPEKRCSNTPGGLQKDIAASKFDSSN SESKDCLDIEPPPVKSLDSHEEFILKDLQMVIGQFTEGTRFGFRDALYRLSGYTEQQQVLQDKDADPNTQKATLHTDDNE TVRFQNNKSLESETNSTDRLIAKLMFNNMEFNMNGHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 1.1E-76 | – | |
| PANTHER | 1 | 274 | 274 | 1.1E-76 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Circadian rhythm | Any biological process in an organism that recurs with a regularity of approximately 24 hours. |
Expression pattern of LotjaGi3g1v0107400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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