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LotjaGi3g1v0110600.1

Overview

Field Value
Gene ID LotjaGi3g1v0110600
Transcript ID LotjaGi3g1v0110600.1
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein, putative; TAIR: AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|A4FVJ7|RBM48_DANRE RNA-binding protein 48; TrEMBL-Plants: tr|I3SBA0|I3SBA0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0110600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:13616524..13622093) extracted from Lotus japonicus Gifu genome v1.2.

GGCGGACCCACATTAGACTGAGGGGGTTCAGTTGAACCCCCTGAAAGAAAAAAAATTCTACTGACCCCCTTGTACAATTA TTTTTTTGAACCCCTGAAAATTTTAATTTGCACCCAGACCCTCTCTCTCACACTAACTACTCAGCTCTAACCCTCTAGGT CAAGCACGCACACACGCACCAGTGCACCACCGGCCACCATCACGGCACCAGTCAGCACCACGCTACTGCTCCACACAATA TACCAGCCGCGCCTCTACCTAAATCTAACTCTCTCAATCAAAACTCTGTCTTTTTGTCTCTAACTTTTCATCGGGTTTCC CCATTCACCAGCTCGATCCATAGGTTCGTTCTCCTGGTCCTCTTTGTTACTCTATTTCTCAATTCTCTCTGTTTTTCAGC TTTTGATTTGAGTACATAGCTATGGAATTCTGCGATTCGCATTCCGCTTTCTGGGTAATCGATTTTTGCTGTTTTAGAAT TGGGATTTTGGGGTGTGTGTTTGGATTGGGCTTGTTTGTTGGGGAATCTTGGAGAGGGATTTGCAGTGGGCGGTGGCTCC TGTGTTGATGAGGATTTTATGGTTTATTTTGTATTCGTGAGAAAGTTGAAATTTTTCATGGGATTGAATAATGAATATTA TATGCGTATTGTATGCATTGAGGGAATAGTGAAGGTTCATGGGATTGAATAATGAATATTATAGAAATGCTTCTGTTTTT AGGGAAGAAGCTGTGAATCCAGTGGAAATTTTTGAACTGGTAAAGGTGAAGGCTTGGACCTGGTTACGTGCAAAAAATAG TAGCTTTATTCATTCTTTTGCTGAATGGCTTAATGAACCTATGGAATGCATTGATGATACTTAAAGTATTTGGTTGAAGG TATGGATGAAGGTCCTGAGTGTGGATTAAAGCTAAAAAGTAAAAAGGGTGCATGTGTATACTCTGTGTTCGAATGGCTGC AGAATTTGAAGGAGAGCATAACTCAGATTTGATGTGGGTTCACATACTGCAGTTATTTGGCAGGTTGTAGAGAGGATCAA AGTGTTGGCTGCAGGGTGTGTTTTATTGTCATGATGCCATTGAATTTTATATGGCTGGTTAGGTTGTGATATTAATTATA GTGCACGAAGTGGTGGTATGCACGGTAGGGACTTGCTATTGTGTCTGCATAAGTATTAAGGTGGTTTTCTTGCAAGGTGC TGTTTAGGCAATAAGTTTTGTTTGTGGTGGAATTAAATTCAGCTATGAATTGACACCAATTTATGACGATTACACTCAAA TGGAGATGGCTACTGCTACTTATACTATAATGGAAGGAGCACCGAAGAGGGGAGCTGATTTAGTGCAGGTCTTTTACTGC ACATTGTTTTAATTTGTGAGGCAGGTTCTTCCTTTGGATATATTCTGGCTGAAGGCATTTGGGCAGTGGAGTGTTGGAGG AGGCTAATTCTCTTATCTGCTTTTATTCCTTCTTGGTGGTTACCTTAGATTTTAGAAATTGGTACTTTTTCCTTTACTAG GTTTTCCCGGGGGTTTTTCCTAGTAAGGTTTTAATGAGGTTTTTTTCTAAAGTCTTTCCTTGAAGAAGATGGTGGGATAT CATTAGTATATGGTTCATGTATTGCTGTATTTTTTGTCGCACTTATCTTATTTCCTTCATTTCCTTACTTGTATTTTGTT CTCTTGGCTTCTTCCGTTCTTGTTATTACCTGGTTCAATTTAAGGTAAGTCTATAAACTGTTTGGTATACCGATGTGTTC ATTTGAAAAATTTGAACCCCCTGACCCTGGGGTCCTGGATCCGCCACTGGTTATCAATTGTCTCAGTAAATGTCTATGTC AATCTGTTATAGCTTTCCACATGATTTCGTTTTTGGAACATTTAGGATTTTGAAAGGAATTGACTAATTTGTTAGTATTA GTGTTAAGGATTAACTAAAACCTAGAATGGCTAAATTGCTTTAAACCAGAATGATTAGTTTAGTTTATATTAACCAAGTT GCATTAATCTCTGGTTTCACTAATCATTTGAAGTTCTTCACTCCTTACTGTTACCAATGTCTTTTATTTAGCTTTCTTGT TCTACCTTGCAATGTTATCAAATACGGTGCTATAGCGTAGTGCTCTGAGGGCTCATCGCTATTTGCTATTTGCTGCTCTG AGGGATTGACCTAGCGGATTTTTGCCTTTCTGCTATTTTCCGCTATTAATAATGCTGCTACCTTGTGCTTGAATTGAGTC ATCGACGTTAATTTCCCGTATTGTTGTTAAATGGAATTTTGGTTATGGGGTTTTCATGGCCACACTAATTATCTGCTTAA CGGGCATTTCCATGAAATGAGCTTAAACACTTTCCCAAGAAAATTTGGTTTGGTATAAAGTTTGATTTTCAATTAGATTG ATAATTTGATTCACCAGGCTGTGGCTATGCTTTTAGTTGTAATTTCAGCTTTTGTTTCTTATAGTATTTTGTTACATTTT GATGGATATGTAGGTTGGAATTTTGTTCTCCTGAAAGAAAATTATGATTTGCTGCATAGAATTGTTTTGTCAATTGTAAA TGCCTCAATTTCATTCTCATAACTAGATAGCTGCAAAAAAACACCTTATTGGAAGAGAAGACGTTCTATGAAATTTTGGT CTATGTTATGTGCCAATTTGTAATTTTCTACCTCTAGTTTTCTATCATTTGTGGCTGAAGTTATTTATAACATTTATCGC ACATGCATGTTGGCCCTGTGTGTTTTATGTAGGCTGGGCTAACCTCTATAACCCATGATTTATCAATTTTGACCCTTATT GTCTCCAGTGCTACACATAAGCTGTTCATGCACCTTTTTCTTCCAATTCCTCTGTATAGATGCCTCGTTACAAAGATGAG TCCCCTGCGGTTTGCGTCTACACGGTCTGTGATGAATCCAGGTCAGCTCCTTCTATTACCCATCAAATTGATGATTTCAT CAGTTTTATATATTGCTTGGTTTTCATATCAGTGTTTGGAACCTTATTGAATTGTGTTTTTTTTTGGAGTGTACAGATAT TTGATTGTGCGGAATGTTCCAGCATTAGGTTGCGGAGATGATTTGAGGCAATTGTTTTCATCCTATGGAGAGATTGAGGA GTAAGTCTATTTAATGACTTTGCAGAGTGCGCCTTTATTCTCCTTGTTTTTCTCAAATAGCTTCATTCTTTAGGTGTCAC CCAATGGATGCAGAGGATTGTGAGCCCTTCACCGATGTCTATTGGATTAAATTCCGCCTTTTCAACAATGCCAGGTCTTC CCTTGCTTCTACATGAAGTAGTTATATTATGAATTTGGGTGTAGGGTTTATTATGTTTGAACAGCCTAAGGATGCTTAAC AAAATGATTTATTTCTTATAGATTTTATATGAAGTTATTCTTTATTTTGTTACAATTATAAAGCACCTGTAATTCTTTTT TATTCAAAAGTTACATAAAGTAGCTTCTAAAAATAATGAGAAATCTAGTTTTTCTTTAGATTCTGGTTTCCTTTTTAAGA AAGTCAAAACAAACACACTCAATTTTTAAGTGAATTTTTCATGAAGAAGCCTATAACAAAAGTTATCAGGATTGTGAAAT CAGTTAGCAGTTAGTTATTATTATTAGAATTAGTATGGTTTTCTGTTAGTTTTAGTCGTGAACTATATATATGCATCACA AGTAATAGAATGAAAATATGTTTCTTCCTTTTCACTCTCCATCTTAACATGGTATCAGAAGTGAGTTGATATTCTTCTCT GCATGCTCTTTCCACCTATAATTTTCAGGTTTGCAAAAAGAAAACTGGATGATTTTGTTTTCCTTGGGAACCGACTGCAG GTTTCATATGCTCCCCATTTTGAGAGTCTCTCAGACACAAAGGATAAATTAGAGGGAAGAAGAAGGGAGGTTTTAGCACG TTTGAACCGTAAGTTAAAGCTTATTTTTAAACATTGGCAGTTAGGCATGCTATATAAGACTAACTATTAATGCTTGATAA GTGAATTATGGTAATGGCATTTTATCAACTTATTTAATGTATTCCCTAAACCCCATGCTATTAGCTAGAAGACCTCAAGT GACTGCAGCCTCAGGATCTAGGCCTTCGATTACCTCAAAGACCACTTCCCTATCAGAAAATTTAGATCATACTGAAAGGT AATTTTATTTTTCCAAATGCACAACAGTTCCTTGCTTCCACCTGAAGCTAAGGCATTGCGGATAAATGATTCTTTTCTTG ACCATAGGGATCTAGCATTTGAAGGAAGGTCGCACAACGGTAATCTTCAAAAAAGAACAGTTTCTTCTAATGAGGTTAGT CACTTCCTCGAATTGGTGGAGATATTTTGGGTGGGAATGAACAAAATTCTTCCTTGCAATAAATGTTGCTAGAATATGTC TTAAGACGTCCTGAATTTAATTTAGACGAGAACCAATTGGAAGAAACATGTATTCACTAGTATTATCTAAATGTTCAACT ATTTTCATATCTATGATGGTAATTCTTGTTTCACAGTTGTAATGTTTGTTGCAATCTGTTAGGACATGGATTGGTGGATT TGATATAGAAATTTCCCATGTTATTAGACATATTTATTTTTTTATTTATCTGGAATGTTATGTGGAAAGAAAAAGTGTTA TTTGATTTTTCATCTATTACCTCAGTCTCATACTAACATGTCCTATAAACAGGATTATTTTGCTTCCCATTCCATGAATC AAACAGTAAAGGTTGTCCGCGATAAGCTCGATAAGGTGATTATTCTATTTCAGAATATCTTTTGAAATATTTTATGAGTG TGTTGAACTTTGAATCAATTTCTCCTTCCCATCTAGATTCAATCCAGTGGAGAGCATCTACAGGATGGACCTGTATCAAA GAAATCAAGAGTTGATAATAGGAGGAGGATTTAATATATGTGAAGTTAGAGTTGTATACAATTATGATCTTTTTTTCAGT CTCAATTTGTTGTAAATTGATAAGATGTGTTTTTATAGGACTCAAATCAAGTACGTGGAATAGCTGATTCACCATATCTT CAATGAAAATTCTGATTTTTATTATTTTCAGGGCTTAGGGAAATATCATAACTGATGATCATATTATGATGGTTGTGTTA AATATTTTAGTAGTTTACGTACCACACAAGTTATGCAAGTGCATATATACATAAATATGCAAGTGCATATATACATAAAT ATTTGTAAATACAAAATTTCAAGTGATTGATGCTTTTTCCTCTGTTTTAACTTATTGGCTGCTATTTTCGTTAATAAGTA CAATGATAAGAGAAAGTCTCTTTTATATTTTTCTGCAAGTTTTATGGAAGATTTAACTTTATTCAGTTTTCCCTCGATTG AGGGGAGAAAATGATTGTTAGTGTTAGTGTAAGTTGTTCAACAATTTCAGAATATGAAATCACGTAGAGGACAACTATTA CTTGTATAATTTCTTATGTATAAATATATTAAAGTGGTTTATAATTATATTAAAGTGGTTTATAATTATATTTTTATTGA TGTGTTCATTTGAAAAATTTGAACCCCTAACCTCGGGTCCTGGATCCGCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0110600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTCGTTACAAAGATGAGTCCCCTGCGGTTTGCGTCTACACGGTCTGTGATGAATCCAGATATTTGATTGTGCGGAA TGTTCCAGCATTAGGTTGCGGAGATGATTTGAGGCAATTGTTTTCATCCTATGGAGAGATTGAGGAGTGTCACCCAATGG ATGCAGAGGATTGTGAGCCCTTCACCGATGTCTATTGGATTAAATTCCGCCTTTTCAACAATGCCAGGTTTGCAAAAAGA AAACTGGATGATTTTGTTTTCCTTGGGAACCGACTGCAGGTTTCATATGCTCCCCATTTTGAGAGTCTCTCAGACACAAA GGATAAATTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGTTTGAACCCTAGAAGACCTCAAGTGACTGCAGCCTCAGGAT CTAGGCCTTCGATTACCTCAAAGACCACTTCCCTATCAGAAAATTTAGATCATACTGAAAGGGATCTAGCATTTGAAGGA AGGTCGCACAACGGTAATCTTCAAAAAAGAACAGTTTCTTCTAATGAGGATTATTTTGCTTCCCATTCCATGAATCAAAC AGTAAAGGTTGTCCGCGATAAGCTCGATAAGATTCAATCCAGTGGAGAGCATCTACAGGATGGACCTGTATCAAAGAAAT CAAGAGTTGATAATAGGAGGAGGATTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0110600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPRYKDESPAVCVYTVCDESRYLIVRNVPALGCGDDLRQLFSSYGEIEECHPMDAEDCEPFTDVYWIKFRLFNNARFAKR KLDDFVFLGNRLQVSYAPHFESLSDTKDKLEGRRREVLARLNPRRPQVTAASGSRPSITSKTTSLSENLDHTERDLAFEG RSHNGNLQKRTVSSNEDYFASHSMNQTVKVVRDKLDKIQSSGEHLQDGPVSKKSRVDNRRRI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20957
3 222 220 2.1E-84
IPR039599
PANTHER
PTHR20957:SF0
3 222 220 2.1E-84 –
CDD
cd12442
11 110 100 5.31164E-58
IPR034264
SUPERFAMILY
SSF54928
12 101 90 8.73E-12
IPR035979
Gene3D
G3DSA:3.30.70.330
17 117 101 2.1E-9
IPR012677
ProSiteProfiles
PS50102
21 99 79 8.979
IPR000504
MobiDBLite
mobidb-lite
125 150 26 - –
MobiDBLite
mobidb-lite
127 146 20 - –
MobiDBLite
mobidb-lite
199 222 24 - –
MobiDBLite
mobidb-lite
208 222 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0110600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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