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LotjaGi3g1v0114600.1

Overview

Field Value
Gene ID LotjaGi3g1v0114600
Transcript ID LotjaGi3g1v0114600.1
Lotus japonicus genome version Gifu v1.2
Description Major allergen d 1; TAIR: AT5G45870.1 PYR1-like 12; Swiss-Prot: sp|P93333|PR101_MEDTR Class-10 pathogenesis-related protein 1; TrEMBL-Plants: tr|I3SGW8|I3SGW8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0114600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:14097821..14098701) extracted from Lotus japonicus Gifu genome v1.2.

ACACAAGCAACAACTAAGCTCTTCTTATTCACCTAATTCATAGCAGTTTCATTCTCCTCTTGTGTGTTAATTTCTCTTTA ACCAGCTTATCATCATCATGGGTGTTCTAACTTTCACTGATGAGACCACCTCTGTTGTAGCTCCAGCAAGGCTTTTCAAA GCTCTGGTTACAGATGTTGACACCATCGTCCCAAAGGTTATCGATGCCTTCAAGAGTGTTGAAATTGTTGAAGGAAATGG AGGCGCCGGAACCGTAAAAAAGATCACTATCCTTGAAGATGGCGAAACCAAGTTTGTGTTGCACAAAATTGACGCAATTG ATGAGGCTAATTGGGGATACAACTACAGCATCGTTGGAGGTGTTGGGTTGCCTGACTCAGTTGAGAAGATTTCATTTGAG TCCAAATTGGATGCAGGGTCCAATGGAGGATCCATTGCTAAACTCACTGTTAACTTCTATACTAAAGGTGATGCTAAACC CACTGAAGAGGAGCTCAAAGTTGGAAAAGCTAAGGGTGATGGCCTTTTCAAGGCAATTGAGGGCTACGTTTTGGCCAATC CTGACTACAACTAAAGTTTGTTTCTAAGAGTGCTTGCTTATATTTGGTATATGTTTGGATGAGCGTTAGCAGAATTGAAT CTGGTCAGAAGTGGATCTGGCAGAATTGGATCCGGTAGACGTGAGTTTGAGTGACGTGATTTATGTTTGGATACAGTTAC AAGAACGTGATTTTAGTAAGAAAATTTTGTTTGGATATCTTTGATTAGAATTGCTTTTGAGTGTGTAATGACTAAAATGG GTATGAATACTTAAATCATTATATAAGGCTTGCACCATTTTTTTGAACTTTATATTAGTATGAATTAATTTAAAATTTAT G
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0114600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGTTCTAACTTTCACTGATGAGACCACCTCTGTTGTAGCTCCAGCAAGGCTTTTCAAAGCTCTGGTTACAGATGT TGACACCATCGTCCCAAAGGTTATCGATGCCTTCAAGAGTGTTGAAATTGTTGAAGGAAATGGAGGCGCCGGAACCGTAA AAAAGATCACTATCCTTGAAGATGGCGAAACCAAGTTTGTGTTGCACAAAATTGACGCAATTGATGAGGCTAATTGGGGA TACAACTACAGCATCGTTGGAGGTGTTGGGTTGCCTGACTCAGTTGAGAAGATTTCATTTGAGTCCAAATTGGATGCAGG GTCCAATGGAGGATCCATTGCTAAACTCACTGTTAACTTCTATACTAAAGGTGATGCTAAACCCACTGAAGAGGAGCTCA AAGTTGGAAAAGCTAAGGGTGATGGCCTTTTCAAGGCAATTGAGGGCTACGTTTTGGCCAATCCTGACTACAACTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0114600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGVLTFTDETTSVVAPARLFKALVTDVDTIVPKVIDAFKSVEIVEGNGGAGTVKKITILEDGETKFVLHKIDAIDEANWG YNYSIVGGVGLPDSVEKISFESKLDAGSNGGSIAKLTVNFYTKGDAKPTEEELKVGKAKGDGLFKAIEGYVLANPDYN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.530.20
1 158 158 1.3E-52
IPR023393
PANTHER
PTHR31213:SF88
1 157 157 7.0E-68 –
PANTHER
PTHR31213
1 157 157 7.0E-68 –
Pfam
PF00407
1 154 154 3.1E-27
IPR000916
SUPERFAMILY
SSF55961
2 158 157 2.47E-39 –
PRINTS
PR00634
3 23 21 1.4E-43
IPR024949
CDD
cd07816
5 151 147 5.44109E-48 –
PRINTS
PR00634
26 36 11 1.4E-43
IPR024949
PRINTS
PR00634
49 58 10 1.4E-43
IPR024949
PRINTS
PR00634
65 84 20 1.4E-43
IPR024949
PRINTS
PR00634
84 97 14 1.4E-43
IPR024949
ProSitePatterns
PS00451
88 120 33 -
IPR024949
PRINTS
PR00634
109 125 17 1.4E-43
IPR024949
PRINTS
PR00634
143 153 11 1.4E-43
IPR024949

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004864
Molecular function Protein phosphatase inhibitor activity Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins.
Subterm of
GO:0006952
Biological process Defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
Subterm of
GO:0009738
Biological process Abscisic acid-activated signaling pathway A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
Subterm of
Part of
GO:0010427
Molecular function Abscisic acid binding Interacting selectively and non-covalently with abscisic acid, plant hormones that regulate aspects of plant growth.
Subterm of
GO:0038023
Molecular function Signaling receptor activity Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0114600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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