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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0117400 |
| Transcript ID | LotjaGi3g1v0117400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S12, chloroplastic; TAIR: AT5G13470.1 hypothetical protein; Swiss-Prot: sp|Q8TCT7|SPP2B_HUMAN Signal peptide peptidase-like 2B; TrEMBL-Plants: tr|I1LKF0|I1LKF0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14394479..14400329) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGATTTGTTCCATTTTAAAAATAGAGGGTCTAGTTGGAGAAATTAAAAATACATGAAACTAAATTCACATTTATGAA ATTATATAGGATAAAAAATACATTTAAGCTTAAAAAATAATTAGGCTACAAACTAAGTACCCATGTTTGGTTTTTCGGTT GAACCTAGCTGAAAGCCAACGGAACTTGGCGAAACCGGCAACGACGGCGAGAAAGAACAAAACGAACGACAAATGTCTCT GGTCGATTATGCTTCCTCTTCAGACGACGACGTTCCGGAACCCACACGCCACAAAGAGGAGGAGCCACCCCAACCTCTCC AACGCAATTCACCGCAACCGCCACCGCAACCTCCTCCTTCGCGAACCCAGTAATTCCTTAACTCTTTGCATCTCTTAGCA GAAAATCACTCGCTCCCAAAGTGGTTTGCATTTGATTTATGGGTTTGATTTGGTTTGACGGCGTCACTAAAATCAAACTC CGCTTACAAACTCAGGGACTAATTTGACTATTAACCCTATATAGTGATAATTTTTCTATATTTACTGAGTTACATTGATT CATGTTGTAAGTTGGCATTTCCAGATTTTAAGTCAATAAAATACATGTAGTTAGTTTTTTGGCATTGATTACTTCTTGTG TTGGTCTTGCACTTTATACAATAGGGACTAATACAAAGGAGAGTCTATGATAATCAGAATAATGCATATCACTTGAGAGC TAAGCATTGGTAAAAAAAAGGGTTGGTTTCATAGACCTCAAACTAATCTGGTTGGTTATGATTAACTTTATAATTAATCC AATTTTTAGTAGAGAAAAAGGATGGGGTTGGAGGGTTGTTGATTTGGACTAGAAGTTCGCTGTGAGAAACTCTATGTATG AAATAGGTCTGATTGATAACACAAAGCAAGGATGGGGATGGCAGGTTGGTCCATGCTTAAAGTTCACTACGAGAAATATA ATGTAGGAAATAGGTAGCGTTGACGGGTATTTAGAGCTGCTGGATTTTTTTATGTTGTTTACTTCTTTTTTTCACTAGAC AATATAGGGTTAGGAATAAATGTATTGGAGGGAAAGTTGAGGTAGAGACCTCTATATGTTAAACATGCAAGCAATGTTTT CAAAAGCAACCTAGAATTGGGAGGGGTGAAATATCTTAAATTTTAGGATCATAACATGTATTATAAAATCTATAAAAAGT GTACAAGTGTTCTTAAACATGTACATATGCATAGAAAACAGTGCAGTTAAGGAAAATAACTTGCAAATCACGTCATTAAG TTCAAATAAAAATTCATGTGCACAACATCCAATACAATTTATAACCATGAACCATCACATAACATTAGTGTTACACGGAA CTAAAGCACAAAAGAAAAGAGTCCAAGTTTCTGACTAGAGTCTAGAAATCTAGATATTTTGCCTGGCAAGTCTATAATGT GCCAATCATGATAGCCATCCTCCATTTGAGCTTCTAGGGCCATGGACACTGATCACAAGCCCTTGGCTGCAACACTCTCC CAGCCAGAATCTTTCTGGCAAACCCCAATCACCAAATGCCCACCCAACGCAGACACCAGACTTCTTTTCGTCACCATTTG CACCTCTTTCCTCCTCTCACTTGGTTTCCGAGAATCTTAAAAACAAGAACTTATCTTGAAACAACTGATCAAGCAAGTGA TCAAGGCACGGGTTGTTCTTCTGTTTCTGGTTTCCTTTTTGTATCTTTTGGTAATGGATTTAAGGCTTCAATCCAATGGT AATTAATGACTAATGGCTGTTTTGTTGCAGACATATGTTGATGGTCATGACTTTCTGTTGAATCTGTTTGTTGGTTGCGA TGAATTTTTAACTTTTTGTAGATCATTCTAGGTTGGCTGGTGGTTGTTGCATTGACTTATTCTTCTTTTATTGAATTGTC TAAATAAAATTTAATTATCTTATGTACGATGAAATAAAAACTATGTGTGATTCATGTTAATCATAATGACTCACACACAT ATTGTAGATGTATGTTCTAATACAAAGTGTCAATTGGACACAAACTAAAGTAGCATTTCACCTTTATTTATCAACATGGT TCTCTGGTCTCAGTATTTATACACTTCCAACTTGTAGGATCAAATATGGATCTTCACCTGGCCAGCCTCTAGAAAATAAA CCACATTCATCTGCATCTTCATCTTCAGTGGAGAAGCTTCCTGATGCATCGCTTCTTTTGAATTCACCTTTTGTCTCATC TAATCTGGTGAGTGCTAGTGATCACTCCTCTCGAGTTGCTGCAGCTCTTGCTGAAAATGCTTCACGTAAGAGAGATTCTA ATGGAATGGCCTCCTCCACTGTTCGTAATAAAGCTCCTAGAGGAAACTTGCCTCATTCAAAGAGTGTTCCAGAAACTACT AGTGGTTTGTTAGTTCCACCTCAGATCAGTGGAAGGTTAGTAGTGATGTGTTGACACTTAACAGAGCTATCTGCTTGTTG ATCTTTGTTTTGTTTTTTTGTGAATTTGTTGCTAGCTATTAAAAAGTTAAATTTATTGTTTCTGTTTTAAATCATCTTTA TGATTAGTAGATCCTGAATTGATGAAGTGTAACAAAATTTTAGTCTCAAATGATGAACTTAGATCAAAGTTTAAATGAGC TATGCCCCACATTCTAGTTATAATTTGGAATGTTGCTTTCCTCAATATAGTACTGGTTTACTAGTTTTCCTGTTGTTTAG TATACTAACATTTTAGTTTGTTGAGGCTATGGGCAGTTAATGTTTTTTGTATTATTATTTGAAAAAAAATATATTATTAG GCAAAAAAAAGAAAAAATAATTTGGAACATATATCATCTAGGTAGAGCTATCCGACCCCCGTGCATATCAGAGACAAAAA TCCCTTTGTAACATGCATGACCCAAAACCCACACAATAAAGGGAGAAAAACTTGCTTATACTGAAAAGGTAAGAAGCTGG AGACATCTTGCTAAAGGCCTTAGCATAATACACTACAGGCTAGCAAAAGGTAACAGTTCCACGACTACTTACACTCTTTT CCTCTTCGACAATCTTGGAAATAAAAATGGAGAGAAAAATCCTGGGGCAGATATTTTTTTATTCCCCAAAAATGCTCAAC TAGTTATCCCTAATTGCCAATGCAGTGGAAAAGCTATTGATGGCAGTTTCTTGGTCCTGAAAATTTCCAAAAATTGATAA GGAAGCCATCCTCACAAAAAGGAAAAGATGATCGGAAGAAAGAGCGATATTACCTAAGAGGTGAACTACCAAGGATTTGT TTGAGTTTCACTTATGAACCATTAGTTTCCCGCCCTCCTCTTTGATATGTCCACGACTTCTAACTCTAAATATAGAATTA ATCAAGTGGGTGTTATCCCCTGCTTCTTGTCAGTTCTGTTAAATAGCGACTATAGTGCCCGCTATAATGCTATTGCGTTG TGCCCAATAGCCTGTCCACTAGCGCTATGCCTTAATGTGGCGGAAAATGCTATCGGCTTGTACAATTAGTCAAGTGGGTG TTATCTCATGCTGATTGTCTATTTTTCCTAGTGTAGACCCTTTTAGTTGCTGACTTGTTCTCACTCTTGCAGCCATTGCC CATTCCTACTCACTTATGGTCTGATATTTCCATAGGTTTTATTAGGGGATAACCCAAATCTCAAGTCAAGGATAATATCT TAGTGGTTGTGAATAGACTCGTGATCCACTGTTCCACTTTGTACCACTCAACTATCCTTCTACTGCCTGAGATGTAGCAC AGCTTTTCTTTTCAAGGAGTAGTCGTATACATGATTTTACAGCTACCATAGCTTCCAAGAGGGACAAGATTTTTCATTAG TCATTTTTGGACTGAGTTATTCTATATGGCTGGTACCAAGCTGAAAGTCTGTTGATCATACCATTCTCGACCAATGGCCA AATGGAATGGAAGTGGTAAATTGGTGTTTGGAGAGTTGTTTGAAATGTTTGATGGGTGAGAAGCCAAAAGACTGGCCTAA GTTGTTAAGTTGGGTAAAGGTGTGGTATAATATAAACTGTAGTAGTTTCACTCACGTTACACCCTTCAAGGCTCTGTATG GTCAAGATCCCCACTTTTACCTCTAAGGAATTGCTGTCCCTTCTGTCGTAGAAGAAGTTAAATCAGATAGTAACTGAAAA TCTGAAATAACACTACTAACAGTGCTACAAGCAATATACTTCGAGTTATTAACAGTTCACTATAGTGGTGAAGCAGCATG TACATGCCTCTGGCTGTTAAAAGGTTTCAATCATACATGGAAAACCAGAGAAAGTCAAATCTGAATAAAACTGAATCTGT TGTCACTGACCACCAGGGTTGTTTCCAGCCAACCCTATTCTCCCGCAAACCCAATGTTCTCCAGTGGTGCCCAGGTGGCA GGTGTTCATCTTGGTTTTCCTGTTTCATCCTATGGTGTTTTCATGGTCGTAACTAGCAAATTAAAAAGTCAAATAGATTG TTCCAATTAGTTGGTAATGGCGTAGGATATGTTGGAATTCCTTTGTGGCAGTGTTGCGTAACTTGAGCTGCGATACAATG CATTAGATATATTGGATATTTTTCCTTTTTATTTCATTTCATTTTGTTAGAAATCTAGAAGAAGAGAGTTTGAGAGAAAA TGAAAATTCTGTATTGTATAGTTTCTGAATCAGAGTCACAATTTATAGCATGATGATGCATACAAAGGAAGCTAACTGTA ACTAACTAGTAACTAACTAACTAACTAACAGCTGTATGACTGCTGTAAAAACTAATTCTGTTACATCTCAAAGTAACTAT AATTGAAGCTAACTGAAACTATACACTAACTTCCCTCCATATACTCAGGGTTTGCTCAAAGGAAGCACCCTGAGTTTGAG TGGAATTCGTGAAATTTGGATTGGGATTAGAGCCTTGTCTAGGATATGTGCAACTTGTTAACAAGAGGCTTGTCCAAATG TTTTGTTCGAGAATGAAGAATCGGATTGTGACAAAGGGCAACTATACCCTGATTGTCGGAGAAAATTTTAGGAGTTGCAA AGGGAACTCGCAGTGCTTTGAGAAGAGATTGCAATCCTAGAAGTTCTGCAGCTGTGAGTGCTTACTTCGATATTCAGTTT CTGTACTGGAGCGAGCAAATATTTAGTACTTTTCCGTGCACTTCCCAAGTCCTGATATTTTCTTTCAGTCTTTCATTCTT TTATTCTAAGATCCCATTGTTTGTCAAGTTCACCATATTCTCTTAGCTGTGTGTTTGTATTTCCTTTTTCAAATATATAT AGAAATTCATGTATTTCTGATTTTTGTAATTTTCAGGAAAAACGTTGTTACAGAAGACATAAGCAAGCTCTTTGTCAAGA AACACTAGGAACATTCATATTGTTAGAAGCTTGCATGTTGCAATCAATGATGGGTGAGAAACTTGCACCTAAAGATGTGG GACACCTACTTGAAACTGCTTGCTCTTGTAGAATGTGTACGCATAAACGGTCTTTGTTTATATCCTTAGGTTTGTTCAAC CGTGTGTAGTTGATTATATTACATTATTAACTTTCAGCTTAGCCAAGTAAAAGAAAAAAGAGGCGGAAACCCGTTAGGGG TGATTTACTGAGCACGTTTTTTAGATTTGCAGGTATGATTAATGATTATTGAGATAGTGAGTTTTTTTGTTGTGAGCACA ATATCCTCCAGAAAGTATAAATCGTATTTTCGTGCTTAGGTTAAGGTTCTAAAATATTGTTAGCTTGCAACATTATTAAG AGCAACATTTTCAGCTTGCAACATTATTCAATTTTCAACTTTTTACTGTCATGAAAACCAAATATAATATCATCAAATAT AGTATATAGAT
CDS sequence (LotjaGi3g1v0117400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTGGTCGATTATGCTTCCTCTTCAGACGACGACGTTCCGGAACCCACACGCCACAAAGAGGAGGAGCCACCCCA ACCTCTCCAACGCAATTCACCGCAACCGCCACCGCAACCTCCTCCTTCGCGAACCCAGATCAAATATGGATCTTCACCTG GCCAGCCTCTAGAAAATAAACCACATTCATCTGCATCTTCATCTTCAGTGGAGAAGCTTCCTGATGCATCGCTTCTTTTG AATTCACCTTTTGTCTCATCTAATCTGGTGAGTGCTAGTGATCACTCCTCTCGAGTTGCTGCAGCTCTTGCTGAAAATGC TTCACGTAAGAGAGATTCTAATGGAATGGCCTCCTCCACTGTTCGTAATAAAGCTCCTAGAGGAAACTTGCCTCATTCAA AGAGTGTTCCAGAAACTACTAGTGGTTTGTTAGTTCCACCTCAGATCAGTGGAAGGAAAAACGTTGTTACAGAAGACATA AGCAAGCTCTTTGTCAAGAAACACTAG
Protein sequence (LotjaGi3g1v0117400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLVDYASSSDDDVPEPTRHKEEEPPQPLQRNSPQPPPQPPPSRTQIKYGSSPGQPLENKPHSSASSSSVEKLPDASLLL NSPFVSSNLVSASDHSSRVAAALAENASRKRDSNGMASSTVRNKAPRGNLPHSKSVPETTSGLLVPPQISGRKNVVTEDI SKLFVKKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 73 | 73 | - | – | |
| PANTHER | 1 | 168 | 168 | 1.4E-58 | – | |
| PANTHER | 1 | 168 | 168 | 1.4E-58 | ||
| MobiDBLite | 12 | 27 | 16 | - | – | |
| MobiDBLite | 29 | 44 | 16 | - | – | |
| MobiDBLite | 45 | 73 | 29 | - | – | |
| MobiDBLite | 89 | 151 | 63 | - | – | |
| MobiDBLite | 111 | 126 | 16 | - | – | |
| MobiDBLite | 133 | 147 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0117400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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