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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0121400 |
| Transcript ID | LotjaGi3g1v0121400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PsaB RNA-binding protein; TAIR: AT3G08010.1 RNA binding protein; Swiss-Prot: sp|Q9SFB3|ATAB2_ARATH Protein TAB2 homolog, chloroplastic; TrEMBL-Plants: tr|I3SFV4|I3SFV4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0121400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14857919..14861984) extracted from Lotus japonicus Gifu genome v1.2.
AGGAGCGGTTCGAAGTGATTAAAAAATTAGATGGAATAAAGCTGATATGAAAAATTACATGTAGGATTAGAGAGATGATG TGTAAGTGTTGACCGGTTAAAATTGATGACACTTAGGCAGAAGAACTTAATTTGATTCAGGAACAACATTCAAAGGATTT GAAATTCAAGGACCCAATTCGATTTCTCTTACAAGTTAGGGACCTCAAATATATTTAAGTAAACTTAGCAATGGATAACT ACCTCAGAACACTGATCAACTACACAAAGAACAACACCAGTTACAGCCATGGCTACTCTGAGCTTCAACCCAACACGTAT CAGAACTCCAACGTTCAACCGTTCCAACCCCTCCACAAAACTCACCTCTTCATCAAAACCCATCAGAATCCCATGCATCC CTTCCTCCATCAACCACAGCCACCAAAAACTGATCCATTTTCGAGCCAATTCAGTGTCAGAAACCTCTCTGTCGACCCAG AAGGAAGAAGAGCAGGAAACTCTCGGTGATGAAGAAGAAGACGATGACCCAACTGCGGAAATGAGCTTCCTCGACCCTGA AACTGACCCTGACGCTATATCAGACTGGGAGCTTGATTTCTGCTCTAGACCCATTCTTGATGCTAGAGGGAAGAAGCTTT GGGAGCTGGTTGTGTGTGACAGCACGCTCTCGCTGCAGTTCACCAAGTATTTTCCAAACAATGTGATAAATAGCATTACT CTCAAGGATGCTGTTGTTTCTGTTTGTGATGACTTGGGTCTCCCATTGCCTAAGAAAATTCGCTTCTTTAGGTAACTTGT TTGCTTATGTGTGTGTGGGAGTTAAAGTTGAAAACATTGTTTTGCTCAGTGTTCATGTTGGAACAGGGAAGTTTTGATTG TTTTTGTGTTTTGTTGTCTTGTAGGTCACAGATGCAGACAATTATTACAAGAGCATGTAATGAGCTTGGCATAAAACCTG TTCCTAGTAAACGGGTGTGTATCATTTCCAATTTTTACTGTGGCATAAGCTTGGTTACTGGTAGAAATTAGTTAGTTAAT GGTTTGATAATTTACTGACAGAGCGCGAGTCGAGAAGCTTTAACTTTTCCATTTGGTGAAGGTGATAAGAATAGGAGTTG ATATAATCTAATCAACTTATGAAAGGGAAGAAGTGATTAGTAATTATGTTCAATAACTTGAATAGGATTTTATAGGAATA GATGTTTATTTGCAGAATCCCAAAATAATGGCAAGGGAAGTAGTGCTAGGATTTTAAATTGCGATTGCAGTTGTGGTTAT ATTGTGGTTGTTGCTGGCCAATGTGGTCCTCAATTACAACTTAATGCAGTTGTGGTGACTGCCACAATCAAGATGTAGTG GTCACTTTATGATGCACTGTGCAATTTCAAACACAGTTTGGTGCTAAGTTTGTGCCTCCAAAATCTTGGTTTATTTTCCG AGTTTAACTTTCCATCGTAATTTGAGGCATATTCAACTGTTCCTTCTAGGACATAAGCTCCAAGTATGCTATTGTCTAAA TGTTTTGGTAAAGAAGCAAACATGATGGGAACAAAAAAGATCAATACTTACACCAATTTGTTGAAAATAGTTTTTTGATG TTTGGGTTTATGTAATATATATGTTAATATTTCATTTGAAAAAATGTAAAGCCTACTCATCTAGGTTGTTTTTATTTTTT AGATAAGAAATTCAAGTTGTTATTATCAAGCTGAACGGAGTAAGGGTCTTTTAATTTTGCATATATAGCTAGCTCTATAA TTACCTGAGTGCTTCAGGATGTTTCAATTTAACAATGAAGTGATAAGAATTATGAAGCATCTTTGAAGTGATTCAAGAGT CACTTGTTACATAAAACTAAAAGATTGAAAATTAAGATTCTTTTGGGGTGCATGAGATTGCCATTGATGCTGTGACTCGA TTTATAGAACTGCTCAAAACACAAGGACCCTCTGCAGTGTCTCAAAAATGTTTCATGATGCATTTTTTCTTCCCCTCCCC TTTTTGGTGATTAAAAATTCATTTAAGTGGCTCAAAGTAGCCCAAGCTGGTCTTTGTGATGTTATCTGTGGGGTGAAATG CCTATGTTACTTGTATGCTTAAAATGAGAAAAATAGATAATACATGGTATTTGTCGCATATTGTTTTGTAATGATTCACT GAGTTCTGATATCCTTGGCAGAGGTGCCCCATCATATATTTTATTCGGTTCATCTGATCCTTTCTCAGTGCTTGTCGTTA CTTCTATGGCTAGAGGAGCGCTACGAGACTGTATATAAGAAGCATCCTGGATTTCAAAAAGGATTCACGCCCCTTTTGGC ATTAGATAATCCTTTTCCCACGAAACTTCCAGAGGATCTTTTTGGCGAAAGATGGGCATTTGTCCAATTACCCTTCTCAG GTATAGAAGCATCACCTTTCATTTCACCTGTTCCCAATCGCATGACTTGTTTTTCATGTATATAGACAGCAGGCGCTTGT TATTCAGGTTCAGAGGCAGCAACTTTCATGTATATAGTGTCTCATACAAATTTGATTGGTGGGGGTAGTAAAGGGATCAC AAATGGGGACAGAGGATTTCAATCCATTCATGAATACTTTAAGTAGTTTCCTTGAATGTATTTCTAACTTTCAATAACCT ATTTTGAAGCTGTTCGAGAGGAGCTCACGTCGTTACAGACTAATACGATCTTTGGCTCTGGGCTAGATCTTGATTTGATG GGTATTGAAATTGATGATAAGACGATGATCCCAGGACTGGCGGTTGGATCTTCTCGCGCTACAGTATTATCAGGTACAGA ACAGAGATTTCAATATTTTCTTCATGTTTCAAAGACATTCATCTTGTACTATTTTTCATTCAAAAACTACCTAGGTTTAA AAATGGCTTTTATGCATGGAATCAATTAATTACTAAGCCAGTGACTATCTGTCTGATCTTGGGCCAAGCAATTTGAGAGC TACTGAAATATGCTGCCTGACAGCATTAAGAATTTGAGTCATACAATGAAGGATTAAAACTTCAAATACTAATGATGTAA TCAATACTTATATGCACTTGAGCACATCTAATTTTACAAATTCAAATAAACAATTTGCTATCTAAGCAAAATTATGATTC CAATACACAGTAATTAGAGTTCATACCATAATTTGGTCAATTTGCTTACTAAAACTTTGAAAACTCTATATAACTGTTGA CAAAAAAAGCTGGATTAGCGTCCTCAATAAGATCTGTGGACAAATAAGACCAAATAGATCAATTAGCGTTTCCTCTTAGT GGCGTGTGCATCTTGCCTGTTAACTATATCTTGGTGGATACTCTTAATATTCATAGATAGCATAACACTATGAACTATTA AAAAGATGGGAGTATTTCAAAAGTTCATAGTTCCATATTGCCTAAGTGTTAAGCTTCCGAAGGTTTGTAGTCAACTTCAC TTTGATGTGGCAACGTGTCTACCAAAGAAGTAGGCATCAGGCGCCTGAGATTGGACTTTGTTGGCCTAATGCACTGCAAA TCCTAAATATTTGATTTCTTTACTTGCATTATATGATTTTGGTTATTTTCATTACTATGTGTCTTATCGAGATCCTCCTT ATAAAAAACTTCTCACCATTTTCTGCCACAGCTATTATGAATAGCTTCGAGCTTTGTACTGTTGAAGCAGACACTGCTCG TGGTAGCTTGATTCTTTCAGTTGGAATTTCTACTCGGTATGTGTATGCAACCTATAAGAAAACTCCCACTACAACTAGTG AAGCTGAAGCTTGGGAAGCAGCTAAGAAAGCTTGTGGAGGTTTGCATTTCCTTGCTATCCAACAAGACATAGAATCTGAA GAGTGTGCTGGCTTCTGGCTTTTACTAGACTTGCCACCTCCACCTGTATAATTGTACCAGTTATTATGGTTGAATATTCA GTGAGAACAAAAATATTACAACAGAATCATTAAATTCCAGAAATTGTTTAACCCAGAATCAAATTCTACCTGAAGTGGCC AACTAGAATTGCCATTCTCAGTCAAAATTTAACTAGATTTGACCATTCCATGAATTAATATATTGA
CDS sequence (LotjaGi3g1v0121400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTCTGAGCTTCAACCCAACACGTATCAGAACTCCAACGTTCAACCGTTCCAACCCCTCCACAAAACTCACCTC TTCATCAAAACCCATCAGAATCCCATGCATCCCTTCCTCCATCAACCACAGCCACCAAAAACTGATCCATTTTCGAGCCA ATTCAGTGTCAGAAACCTCTCTGTCGACCCAGAAGGAAGAAGAGCAGGAAACTCTCGGTGATGAAGAAGAAGACGATGAC CCAACTGCGGAAATGAGCTTCCTCGACCCTGAAACTGACCCTGACGCTATATCAGACTGGGAGCTTGATTTCTGCTCTAG ACCCATTCTTGATGCTAGAGGGAAGAAGCTTTGGGAGCTGGTTGTGTGTGACAGCACGCTCTCGCTGCAGTTCACCAAGT ATTTTCCAAACAATGTGATAAATAGCATTACTCTCAAGGATGCTGTTGTTTCTGTTTGTGATGACTTGGGTCTCCCATTG CCTAAGAAAATTCGCTTCTTTAGGTCACAGATGCAGACAATTATTACAAGAGCATGTAATGAGCTTGGCATAAAACCTGT TCCTAGTAAACGGTGCTTGTCGTTACTTCTATGGCTAGAGGAGCGCTACGAGACTGTATATAAGAAGCATCCTGGATTTC AAAAAGGATTCACGCCCCTTTTGGCATTAGATAATCCTTTTCCCACGAAACTTCCAGAGGATCTTTTTGGCGAAAGATGG GCATTTGTCCAATTACCCTTCTCAGCTGTTCGAGAGGAGCTCACGTCGTTACAGACTAATACGATCTTTGGCTCTGGGCT AGATCTTGATTTGATGGGTATTGAAATTGATGATAAGACGATGATCCCAGGACTGGCGGTTGGATCTTCTCGCGCTACAG TATTATCAGCTATTATGAATAGCTTCGAGCTTTGTACTGTTGAAGCAGACACTGCTCGTGGTAGCTTGATTCTTTCAGTT GGAATTTCTACTCGGTATGTGTATGCAACCTATAAGAAAACTCCCACTACAACTAGTGAAGCTGAAGCTTGGGAAGCAGC TAAGAAAGCTTGTGGAGGTTTGCATTTCCTTGCTATCCAACAAGACATAGAATCTGAAGAGTGTGCTGGCTTCTGGCTTT TACTAGACTTGCCACCTCCACCTGTATAA
Protein sequence (LotjaGi3g1v0121400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLSFNPTRIRTPTFNRSNPSTKLTSSSKPIRIPCIPSSINHSHQKLIHFRANSVSETSLSTQKEEEQETLGDEEEDDD PTAEMSFLDPETDPDAISDWELDFCSRPILDARGKKLWELVVCDSTLSLQFTKYFPNNVINSITLKDAVVSVCDDLGLPL PKKIRFFRSQMQTIITRACNELGIKPVPSKRCLSLLLWLEERYETVYKKHPGFQKGFTPLLALDNPFPTKLPEDLFGERW AFVQLPFSAVREELTSLQTNTIFGSGLDLDLMGIEIDDKTMIPGLAVGSSRATVLSAIMNSFELCTVEADTARGSLILSV GISTRYVYATYKKTPTTTSEAEAWEAAKKACGGLHFLAIQQDIESEECAGFWLLLDLPPPPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 382 | 382 | 1.9E-183 | – | |
| PANTHER | 1 | 382 | 382 | 1.9E-183 | ||
| MobiDBLite | 57 | 95 | 39 | - | – | |
| MobiDBLite | 69 | 86 | 18 | - | – | |
| Pfam | 100 | 374 | 275 | 4.2E-86 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0121400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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