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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0124900 |
| Transcript ID | LotjaGi3g1v0124900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic; TrEMBL-Plants: tr|V7BSX0|V7BSX0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0124900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15271527..15275138) extracted from Lotus japonicus Gifu genome v1.2.
CTAAACTCACACATTTCTGAAACTATAGGACCAAAGCTATAATCAAGAAAGAAAAAACCAACAAGATAAAGCTCTGATGC TTCCAACAGCAAAATCATCCATTTCCATTTGCCTTTGCTTCTTCACTCTCTCTCTCTTTGTCTCCCTCAACAATGGCTGC TTTGCACTCTTATCTGCTCACACCACCCAATCTTCTCTCCCTCACAACTCCATCTTCTTCCACAACCAGCAACCTGCAAC CCCGTCATCTCAGGTTGGCGCCTTCTCTCGCACGCCCACTCCGTTTACGAAGACCCTTTGCGGTGGCGGAGCAAGCTGCG GCCACCCAATCTGAGGCTGACCGGAGACTCTACGTTGGCAACATTCCTCGCACTCTCACCAACGATGAGCTTGCAAACAT TGTTCAAGAACATGCTGCTGTTGAGAAAGCAGAGGTATACATTACCCATTTGTTGATTTTCAATGGGGTGTTTTTTTTTT TGTGAGATTTCATGGATGGTGTGTTTTCTTTATTGAAATTCTTTTTTGCAAAGAAAGTTATGCACTAATTATTGTCAAAG TTCTGATTTTTTATCCAATTGTGGTAATGGGTACTTTTTAGTGGAGGAAGTTGGTGTGTTTGCTTATTTAATTGAACGTT CAAATGGGGTGTTTCAAGTTGAATCTTCATTTAGGTCCCGTTTGGAAGAGCTTATGAACAGCTTATTTGGTCTTATTTAG TAAAATAAGCACTTATGTACATGTTTGGAGGAGCTTATCAAAATAGCTTATAAGCTTCAAATAAGCTCTTTATAGATTTT TTTAATAAGCTATTGGTTGTAGCTTATAGCCAGCTTATTTGGAGCTTATGGTGTGTGTATTATGCTGTTGCTTTTGTGGA CAACCTTGCTTTGGTGGAAAGTAGAGGAAGCTTGGCTGTTTTAAGTTTACTGTGTGGAGAAATGCTAGCAATGCACTCTC GAAAACCCTTTCCGACATATTTTCTCTAATTGGTTGAAATTCATGTGGACTCAACAAGGGATCCATCGGATTGAGAGTGG GATACATATAATTTAGTGTACTTATATGAGTTTCAATCAATAAAAGAACGTGTTAGAAAGAGTGTATTGCTAGTATTGCT CTTATTGTTGATTATCCCTTTTAGGAAAAGATGCATATGATAGAGATCTAAGTGGAACCAAAATTGCACAACATGTCTTG TTTTCCTTTTTCCTACTTGGTAATTGCCAAGTTAATACGACGATAGCAGAATTTGGATGACATGAGCATTAATATATGTA CTCATGACTCAGGACCTTCTGAAATTTTCAAAAATAGCTTGAAAGATAAAGAGGTGTAGTAAGTAGTACATGTGACTGAC TTATAATAAAATATTGAAATCTGAAACTTCAATCAGTTTTACCTCTTTATGATGCTAAACGGCTCAATTGAGTGATCATA TAATTCTATTGACAACATGAACCAAATAAAGGTCTTGCAAGAACCTGAGGAATTGAAAATAAACTGAATGGTATGTGGTT TTGGGGGAGGGAGCATACTTTATATCCTTGTAAAATAGTTTAACAACTTCATCTGTAGGTCTTTTCGTTATATATGGGTT TGGGAACAATTTGTCTGTTGTCACATATTAGGACTGATCAACTTATTCACTTTTCTCTGCATATGATTCACAGGTCATGT ATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACTGTGAAAACTGTTGAGGATGCAAATGCAGCAATTGAG AAACTTAACGGCACAGTAAGTTTCATTGCATAATTTACAAAAATCTATTTAAAGATTGCCATTGTTCATTCAGCAATTTA GGTTTCTTAAAGAACTAATGAACTTCATGTTTTTATGACAGCAAATTGGAGGACGTGAGATTAAAGTAAATGTAACTGAA AAACCTTTAACGACAGTAGATTTTCCTCTAGTCCAGGCTGAGGAATCCAAATATGTTGACAGTCCCTACAAGGTATATGT GGGAAATCTGGCTAAGACAGTTACAAGTGATATGCTCAAAAACTTTTTCTCTGAGAAGGGAAAAGTGCTTAGTGCCAAGG TTTCACGGGTTCCTGGGACCTCAAAGTCCAGTGGCTTTGGTTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCA ATCTCATCCTTCAACAATGCTGTAAGCTGTTTACTTCTCTTTTTGTTTATTTGCAAGTTGAGACATCCCAATATACTTCA AATACATGGTAGTATTATATAACGGGGTTGCCTAAATGACGCTAAACGAAGTTTGGGTTAAATCACCCTAGTCATAGGTG GAGGGTGGACCAATGATATTTAAGATAGACAAATAAATAAGAAATTCAAACCTTGTTTATAGATAATGACGGTACTTTTT TATATATACTTGCTAGAGTAACATGCAGTGTACAAAACGCAATTGAATTTGTTCTTTATGTCCTTACATTATCTATCCCA AGGAACTCTGTCAATGAACTGTATTACTTTTTAATATGATCTTATAAGTAATTAAAGACATTGGCAAAGCCACAATAGCC TGCTTATTTTCCATTATCTAGTTTCCTCATAAACATATGCTGGTCTCATCTCTCTCACTCTTCTTGCTCATGCTTGCTTT GGTTGCCCCAATTTTCCTCAGATTGTAAGTATTTATCTTGACTTCTGTCGTTGTACAAGTTTCTTATCGGTAATCTCCTA ATTTGTGAACATGACTTAATTCTATGATGCTTAGATCTGGTTGTTTATTGGAACTGAATTTTGTAAATTGAAAATAATGG GAGCTTTAATGATTGATTAATTTGCTTCTAGATACTATGCTGACAGTGATTTGGTATTTGTCTGATTACATGTCAATTGC AGCCATTGGAAGGACAAAAAATTCGTGTGAATAAGGCGTAGAGAAATTAGCAATGTTGCAGAGCATGTTTGACCAGGTGT CCTCTAGCAGGAGCAGAGTATAATTTTGTGTGAAAGTTGAAATCACATACAAATTGCCTTGTTTGTTGTACAGCAAACCT ACTCATTCTCAGATGATTAAGTTCTAAGAAAATGTATGAGAGTATCATAGAGCTTAATGCTTCTGTTGCAGGCAGTGTAC CTCTTCTAGTCCAGGATTTTGAACCCTCACCACTTCATGATTATGTTGCTCTTTTTTTTCTCTTCCTCAATTTGGCAAGT CTTGTTGCATGTATTCAATTCCCTTTTAATGTTTGAATGTGAAATCCTAATCTCCTACGAACATGCACGTTGATATGTTG GAGTTCTTGTGCTATAGTTTGTCATTGCATAGAGCATGATTCCTCCACGAATTTCGACAGATTATTGTACATCTTTATTA GAGTATAACATCAACTTAGCAAATTTGGAATGAACATGTTCTTACATATATTATCACTAAGGGTGGAAAAGTATTTCCTG ACTGAGACTTGATGACGGATGTAGAATTTTAAGAAGAGCAACATAAACAAAATGCTAAAAGTACCAATGTTCATAACAAT CTCAATAAATTTTCATATTTTGGTAACATTGAATGATTCCCAGTTTCAATATATCAAAAAATCTCTTTATATAAGTAATC AAATCATTTAAT
CDS sequence (LotjaGi3g1v0124900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTTTGCACTCTTATCTGCTCACACCACCCAATCTTCTCTCCCTCACAACTCCATCTTCTTCCACAACCAGCAA CCTGCAACCCCGTCATCTCAGGTTGGCGCCTTCTCTCGCACGCCCACTCCGTTTACGAAGACCCTTTGCGGTGGCGGAGC AAGCTGCGGCCACCCAATCTGAGGCTGACCGGAGACTCTACGTTGGCAACATTCCTCGCACTCTCACCAACGATGAGCTT GCAAACATTGTTCAAGAACATGCTGCTGTTGAGAAAGCAGAGGTCATGTATGATAAATACTCTGGAAGGAGCCGTCGCTT TGCATTTGTTACTGTGAAAACTGTTGAGGATGCAAATGCAGCAATTGAGAAACTTAACGGCACACAAATTGGAGGACGTG AGATTAAAGTAAATGTAACTGAAAAACCTTTAACGACAGTAGATTTTCCTCTAGTCCAGGCTGAGGAATCCAAATATGTT GACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAGACAGTTACAAGTGATATGCTCAAAAACTTTTTCTCTGAGAA GGGAAAAGTGCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAGTCCAGTGGCTTTGGTTTTGTTACTTTTTCAT CAGATGAGGATGTAGAAGCTGCAATCTCATCCTTCAACAATGCTCCATTGGAAGGACAAAAAATTCGTGTGAATAAGGCG TAG
Protein sequence (LotjaGi3g1v0124900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALHSYLLTPPNLLSLTTPSSSTTSNLQPRHLRLAPSLARPLRLRRPFAVAEQAAATQSEADRRLYVGNIPRTLTNDEL ANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESKYV DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 240 | 205 | 8.0E-102 | – | |
| PANTHER | 36 | 240 | 205 | 8.0E-102 | – | |
| Gene3D | 40 | 145 | 106 | 3.9E-26 | ||
| SUPERFAMILY | 58 | 142 | 85 | 2.55E-25 | ||
| ProSiteProfiles | 64 | 142 | 79 | 18.223 | ||
| SMART | 65 | 138 | 74 | 8.1E-25 | ||
| CDD | 65 | 142 | 78 | 3.51768E-33 | – | |
| Pfam | 66 | 136 | 71 | 1.1E-19 | ||
| Gene3D | 150 | 240 | 91 | 3.4E-24 | ||
| SUPERFAMILY | 158 | 240 | 83 | 1.33E-24 | ||
| ProSiteProfiles | 164 | 240 | 77 | 18.547 | ||
| SMART | 165 | 238 | 74 | 9.5E-24 | ||
| Pfam | 166 | 236 | 71 | 1.9E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0124900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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