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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0135700 |
| Transcript ID | LotjaGi3g1v0135700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear fragile X mental retardation-interacting protein 1; TAIR: AT5G18440.1 GATA zinc finger protein; Swiss-Prot: sp|Q9QXX8|NUFP1_MOUSE Nuclear fragile X mental retardation-interacting protein 1; TrEMBL-Plants: tr|K7MNN7|K7MNN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0135700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17367578..17374342) extracted from Lotus japonicus Gifu genome v1.2.
GTGTATGAAACAGAGGTTAAGGGGTTAATTTCAATTGTAATCTTAACCAAATATGTTTGATTAAGAAAATATGTTTTTTG AATTTTTTTTAAACTAAGAAATCTACAATAAAAAAAGAAAAAAAAAAACAACTCGTGGAGACATGGTTTCTTTGTAAAGA CTAGGTTCAGTAGTTCACTGCCGGTTCAAAAATTCCACAGCCGTCACTCACTCCTTTCCTCCGCCCCTTCTCTCCCGTCG TCGGCGGCTGATAGCCACCGCCGGTGAGTTTCCCCTCTCTCTTTCTCCGTTTCGTCCCTCACTCTCTCAGTTCACGTTAC CATGGAGCTTCACAGTGAACTTGGGGTTTGACCACAAGTTCGATTTTGGTAAACTCTCACCTTTCTCTTCCTTCTTATTC CTCGCTATGCTGGTTGCAAGTTTCTAGAGTTTCCTCAGTTACTGTGCAGAACTGAACTCACACTTTGCATTCGAGGTTTC TTAGGTTTTACTTCATTCATATCATGTCTAATAATCAGCAAAACAATGGTGTGGGCATGCAAAACCAGGCTCAATTTGGT GCAGGAAATAATCAAAACCAAAACTTGAGACCCCCCTTTATGCCCAACATGCATCCACCACCACCACCTTTCATGAATGC TGCAAATCACAATCAAATGCATTTGCCTCACATGGGTCAATCCCATGTTGGGATGTTAGGTCCCCAGAATAGTGTTGTAG GGAATGTCAATTACAATAATCCAATGTTTCCTCATCAGGGACAAGTCATGCAGAATGCAGCTCAGATGAACTTGTCTCAA CTCCAGGGGTTAGCACAAGGTATTTTGAATATACTTCAGCAGCCTAATATGAATATGAATATGAATATGAGTATGAGTAT ACCGAATGGCCAATTTTGTGCCCCGCCATATCCTGTGCAAAATATGAACCAGCAGTTACCTATGCAAGTGTCAAACCCTT CACAAGTTGCTCCATATGGTATGCATCCCGGTCTCCGTCCCCGTCCCATGTTTGGGTTTCCAAACCAAGTGCCTGTGTCA CAGCCCATGTTCCCTCAAAACTCAATTTTTTCTGCAAATCCTCAGATGGGTCATGTGCCCGGAAATCAGGTCAGGCCACA GATTGACCCGAATGAGAAAAAATTGGTTCCACCAAATGTGAACACAAATGCTTTTGTATCATCACCTTTTCCATCGCAGC AGTTACAAGGGAATGGTTCTGCACCGGTTAATCCTCATTTGGCGCAGCCACATCATACAAATAATTCTCAACCTTCTGCA TTTATGAACTCAAACTCACAGGTATTTTTAAAAGTGATGTATCTCAGTATCTGTCTTGTTCATGTGTATCATCTGAATTT GTTATTCTACTACATATAGTATACGATTGTAAAAGAAGCTGTGGCGATTATATTTGATGCAAATTCTTATTATCTCTGCA GGAAAAACCTAATAGCAATATCAAAGCTAATGTTCCAAACTCTAATTGGAAAGGGCCACCAAGCAAAAACTTCAAAAATA AACCAAGTAGAGGTGGTTTTCAAGGAGGGTATGTTATTTTCTTATCACTTTTATTGTTCTTGGTTAATCACGTTATCAAT GGATGCGTTATTGATTTCATGTGATTTACAAACCTTGTCCAATTCATGTAGATTCCAGAAGTCTAAGTTTGTCAATATCA ACAATGGAAAGAGGGGAAATGGGTTTCCTGAAGGCTGCAAAGGTTTGAACTTTACAACCTTACTACCTTAGTACTAAGAT GAAAATATTTTTATGTGGCTAGAGTCTACTAATGCTTGTAACCGAAGCAGGTGCCAACAAGGGGAAGGCAGGGCATGCTG GTTTAAATTCTGAGGAACTTAAGCAGGAAGCAAAAAGGTAGCTTTAGCTTCTACTTAACTTTCCAATCCTTTTTTTTATC TGGTTTCAGTCTATTACTTGCTAGCAGTGCCTTACATTCAACTGTTTTTGTTTAATTGTGTTTTGTTCATAAGGTGTTAA AAGATGCTAATTAAATAGCCTTTTCTTTTGTAAACTGCAAAATCACTGGAAATGAATGTTATTTCAGATCACATTGTATA AACTGTATACTAAATTTTAGCATAGCAGCCATCCCTCTATGCGCTATACCGCTATAGTGAATGTGGGGACGGCCACTACA CAACGCTATCTTGGATTGATGACACTACTTCTAATGTATCAATAATAATGGTGTTAATGAGAAAGGTAAAACAATAATGT TAGAATATATTGTTCAATCTTCAGAAGTTTTGACATGTAAATCTCCATTATGTTGCTGAATGTCCAGTTCTTTAGTCTGT CAAAGTCGCTACATTTAGTTTGTATAATAAGGATTAGGCAAATAATCAGCTCTATTTTCTCCCCTGATCTGTAACCAGCT TCCAAAAATTTCATAAGTTGATCCTTTATTCCTTATACCGAAGTTTAGGTAGTTAGGAATGTGAGTGATTAGCAGTGCAG TTAATCGCGGATAGTGTAAAGCCAAAAATCCTTTATGCAATTATGCCTCAGAGCGGAAGCGGATAGCAGTGTGCCCTCAG AGCGCCATAGGGCCGCTATATCGCCTATTAGACAACATTAGTGATGAATTAATGTTGAAACCAAAATTGTCATGCAAAAT GAGGTAAATCAACTAAATACATAGCTTATATAATTAGAGGCGGTGGGGGTCGAGGGGGGGCAAAAGTTCAACTCTCTTTT CTCCCCTGATCTGTAACCATCTTCCAGAAATTTGTAAGTTGATCCATTATTCAGTGTACCTAAGTTTAGGTAATTAGGAG GGTGAATGATTAATTGATAATGACTTAATTTGAATCCAAAATTTTCATGCAAAAGAAGGTAAACCAACTAAGTATAGAAT AGAAACTGATTCAGATAAAGCATAGAAAAAGGAATTCTATTATTAAATCTTCCCAGATCTGCATCAGTGGGGTGACATAA TAAGAAAATTAAGAGGATTACATGAACAACAGATACAGAAGCTCCTTGGCATAATAGAGACTTTGACTCTCCCAAAATGA CCCTTATTACAATCTAGATACCCTCTCTAATCTCCCCTTGTTATTTATGACTTATTCTCTCCCTCTCTAACCAACTCCCT AGCTAACTAACTACTTAACTAACTCTAACATTTACTATTTTCTATCAATACTCAGTCCTTGAAGTTTCACCTTGTCACCT TGTCCTCAAGCTGAATAGTTCTTGATAGCTAGTCGTGGTTCCCGATTATTAAAGCAGCGCGATAAACTTGACCACAAGCA TAACGGTAGCTTGATCAGCAAGTAAAATAGTCACCAACCCTCCATGTATCACCAGTTGGCTAGTGATCACCGTTACACCT TTTGGATGCTTCCTGATCTCTATAATTTCTTTAGCAGCATGAACTCTACTTCCAACCATAGTGGTAAGAATACCAGCAGT CATGCTCCTCTTTCCTACTCGTGCTGCAGCTATATTAATTGCACCCTTACACCGCTTCTGAATTTTGACCAGTTTTCCAT AGCCAACAGGAGAACAACATAGGCAGGGTCTGCTGAATTCTTCATTTCAATTTCAACAATGACATGAATTTGTTGATCAA GGAAACACCATCAACAATGACAGCTTCTGATCCATTTCCCTCACGGTTGTCGTGGGCCGGTCCAAGAGTTCGAGACCCAA ACAACCAAGGAAGTTGCGCACACCCCTCTTTTCTGTTCCACCTTTGTGCTATTTTGGAGCTGTCCAAAAATACGCCGCAC ACTTTTTTATAACCTCATCATTTTTTCCTCCAGATCTTCATGACCTCTTTTATACATTTTTTTGCTGATTTTGTTCACTC CTTTGTTCTTTGATATTTTTGTTGGCTCTTTGAGAGAAAAAACTTCATCCAATGACTCAAAAGAATTTGATTTCATCTGT GTTTTTTTGCTTCCATCCCATCAGCTTCTCTTGCATTCTCTATGACTTCATCTTTTCTTCTACTTTCCTAGTCCCGGGAT TCAAAGTCCTCTTGTTGAACCTAGACTGGAATATCTGGGTCAAAAATTATGGATGAAATTTCTTGAGCAAGGCTTTCATG AACTCTCACCTTGTTGCATTAGGATGGTACCATTTCCACCCAAGCTACCAACTGAAAGCACTACCTGTCAAAGCCTTTAC AACCTCCTGTAGCTTCTTCTCCAGGCATATCCATGGCCTCAAAATGCTGCTCCATGTGAATGAGCCGCCAATAAGCGTTT CATCCTGCAAAAGATGGCGTCTCATTAAATTCCTCCTTGAGTCCCCTCCTGGAGCTGTCAATCTCTTTTCCCATTTCTTC AAGAATGTTAGGAATGTGCTCCTTTTTTACTGAATGCAAAACAGTTCCTAGATTCTTGAAGATTCACTGCCCCACAGCTC CTTGATGGAGATTTGATACCAGTTGATAGAAACTTGTTCAGATAGAGCACAGAAAAAGGTAAGATATTATTAAAGCTTAC TTTCCAGATATGCACCAGAGGGTTGACAGAATAGGAAAGTGAAGAGAATTGCACTGAATAACTGATGCAGAAATTCCTTG GTATTTGAGAGATCAGGACTCTCCCAAAATGACCCTGATTGCAGTCCATATATCCTCACTAATCTCCCCTTGTGTTAATT TATCGCCTCTTCTCTCCCCCTCTAAATAACTCCTTTATCTAATTAGCTATTACACTAACTATCTCTGTTCAACATTTGCT AACTGTGATCTATAAATATCTATTAGTATATTAGAAAAATAAAGTATCAGCAATTAGAAGGGAGCGCTAATTATCCTGCT GACTTAGAGCCTGTTTGGATGCAGACCAAAGAGCACTTATTGAAGCTGATTCAGTGCATTTGTTGTAGAGAAGCTCCCAT AAGTGTTTTTTGGTCCGTATCCAAAAGGGTTTTTAATCTATAACTTAGCCACTTATATAGACTTACATATAAGCATATTG TATTTGAACTACAATATCAGGTAAAGTGGTAAAAAACATTTGTCAAACAATGAAAAAAACCACCTTACTTCTCTTCAACA TATTTAGTTAATCAGGTTCATGATTTTGGTCTGAAAATCTCAGATGTTTTATTCAGATAAATGTCTACCAGAGATAACCA TCGAAATGACGCAAATCTTTATTTTGGTGCTATTTTTAAGAGTCTTGTTATGTTCTCATCATATTTTAGTTGTCTTTATT AAACGATTTTCTTAACTTTTTTATTTTGCAGCTTATCTTTTTTGTCTTGACAACATCTTAAATCTTCGAACATTGATTTC TTTAATGATCACTGTTCTTTTGTTTCTTGAACGGTTAGATCTGTGACTTACTCAGAGCAAGAAATCCAACAGTGGCGTGA AGCACGGAGAAAGAATCACCCTTTCAAGGACAACATTCAGAAGGTTTTAAACAACCTACCCTATCTTCTGCTTGTGTTTA TCAGATTTTATTGTCTAACAAGTATAATTTAAATTACTACCTGCTGAAGCAGAGTGAAGACCAGAAAGACACCAAGGTCA TTGATAGAGGCGTCTTGCAAAAAGAGGTATGCTTACTGAGGGATGTTTTAGCATATAATACCTCCCAATATAATATTGTC ATATCACCAACTTCAATTTTGTTGTTAAATGGAAACTAAGCAAGCAATATCTTTTGGCATGAAGTGATGATAAATAAATA TTTCTTGCACTCCATGATCAGAAGTATCTCAATTCTTTAACTTCGTATATGTGTTTTATATTTGCAGCTCAAGGAGGTTT TAGCTAAGCAAGCTGAGTTGGGTATTGAAGTTGCTGAAATACCATCACACTACCTGAAGAATTCTGAAAATCAAGGTTTT CAAACTGAGGGGAAAAACTCATTTACCGACAAAAGGAAATTCCAAAACAAGTTCAATAAGAAATCAGACAGAAGAGGTCG GTTCGGCAAGAGGCAAAAGTTTTCTCACAACGACATTTCAGAAAAACCTGCTTTAAACAAGAAGAAGCCAACTTTATTAG AGAAACTCTTGAGTGCAGACATAAAAAGGGATAAGAGCCACCTGTTACAGGTTTTCAGGTTCATGGTAATGAATTCTTTC TTCAAAGATTCTCCTGATAAGCCACTGATATACCCATCAGTTAAGGTTAAAGAAATAGGGTCTGAAGGTGGTTGTGAAGA AAAACATTTGCACACTGGAAAAGATGCTCTTGAACGCGGTAATGAGAAAACAGTTCAAAACATTGCAAACCACAGTATTG ACAATGATCATGATAGTGAAGATGGAGAGAGTGAAGATGAAGGGATTGGGGAATCGGATGAAGAGGAGGGAGAAATTTTA GAGTGAAGTTCAAGGTTTGCAGTGTCTGTTCTTGCAGCAAAGCTTTTGATGAATAGCAAATATTGTAATATTTTCTGTTA AATTATTTTTGTTGTTTATGTCATTGTTTTGGCGTCACATATGTGGAGATTGGCATGGAAGGTCTAACCCTAGTTGTGGG GAATTTTCTTACAATATATTTTGGAGTTGCAAATATGAAGTAATTGTTGGTGGCATGGGGTCCTCATCATGCATTGCGTG AGGCAAAAGAAGATATATGGCTAAGCAAATGTTGAGTAAATTAAAACTACATGCAACTTCAGGGGATGTTGTAAAATATA TTCTAGAATCAGCTCTAATTGACAATCAAAATAACATCTCAATAGTTGGTAGACAGTGAGTTCCTAAGCATGTTGTCAAG GGTTAAAATTTTGGTAGTGTGTATGAAAAAGATTAAGAAAATTTG
CDS sequence (LotjaGi3g1v0135700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATAATCAGCAAAACAATGGTGTGGGCATGCAAAACCAGGCTCAATTTGGTGCAGGAAATAATCAAAACCAAAA CTTGAGACCCCCCTTTATGCCCAACATGCATCCACCACCACCACCTTTCATGAATGCTGCAAATCACAATCAAATGCATT TGCCTCACATGGGTCAATCCCATGTTGGGATGTTAGGTCCCCAGAATAGTGTTGTAGGGAATGTCAATTACAATAATCCA ATGTTTCCTCATCAGGGACAAGTCATGCAGAATGCAGCTCAGATGAACTTGTCTCAACTCCAGGGGTTAGCACAAGGTAT TTTGAATATACTTCAGCAGCCTAATATGAATATGAATATGAATATGAGTATGAGTATACCGAATGGCCAATTTTGTGCCC CGCCATATCCTGTGCAAAATATGAACCAGCAGTTACCTATGCAAGTGTCAAACCCTTCACAAGTTGCTCCATATGGTATG CATCCCGGTCTCCGTCCCCGTCCCATGTTTGGGTTTCCAAACCAAGTGCCTGTGTCACAGCCCATGTTCCCTCAAAACTC AATTTTTTCTGCAAATCCTCAGATGGGTCATGTGCCCGGAAATCAGGTCAGGCCACAGATTGACCCGAATGAGAAAAAAT TGGTTCCACCAAATGTGAACACAAATGCTTTTGTATCATCACCTTTTCCATCGCAGCAGTTACAAGGGAATGGTTCTGCA CCGGTTAATCCTCATTTGGCGCAGCCACATCATACAAATAATTCTCAACCTTCTGCATTTATGAACTCAAACTCACAGGA AAAACCTAATAGCAATATCAAAGCTAATGTTCCAAACTCTAATTGGAAAGGGCCACCAAGCAAAAACTTCAAAAATAAAC CAAGTAGAGGTGGTTTTCAAGGAGGATTCCAGAAGTCTAAGTTTGTCAATATCAACAATGGAAAGAGGGGAAATGGGTTT CCTGAAGGCTGCAAAGGTGCCAACAAGGGGAAGGCAGGGCATGCTGGTTTAAATTCTGAGGAACTTAAGCAGGAAGCAAA AAGATCTGTGACTTACTCAGAGCAAGAAATCCAACAGTGGCGTGAAGCACGGAGAAAGAATCACCCTTTCAAGGACAACA TTCAGAAGAGTGAAGACCAGAAAGACACCAAGGTCATTGATAGAGGCGTCTTGCAAAAAGAGCTCAAGGAGGTTTTAGCT AAGCAAGCTGAGTTGGGTATTGAAGTTGCTGAAATACCATCACACTACCTGAAGAATTCTGAAAATCAAGGTTTTCAAAC TGAGGGGAAAAACTCATTTACCGACAAAAGGAAATTCCAAAACAAGTTCAATAAGAAATCAGACAGAAGAGGTCGGTTCG GCAAGAGGCAAAAGTTTTCTCACAACGACATTTCAGAAAAACCTGCTTTAAACAAGAAGAAGCCAACTTTATTAGAGAAA CTCTTGAGTGCAGACATAAAAAGGGATAAGAGCCACCTGTTACAGGTTTTCAGGTTCATGGTAATGAATTCTTTCTTCAA AGATTCTCCTGATAAGCCACTGATATACCCATCAGTTAAGGTTAAAGAAATAGGGTCTGAAGGTGGTTGTGAAGAAAAAC ATTTGCACACTGGAAAAGATGCTCTTGAACGCGGTAATGAGAAAACAGTTCAAAACATTGCAAACCACAGTATTGACAAT GATCATGATAGTGAAGATGGAGAGAGTGAAGATGAAGGGATTGGGGAATCGGATGAAGAGGAGGGAGAAATTTTAGAGTG A
Protein sequence (LotjaGi3g1v0135700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNNQQNNGVGMQNQAQFGAGNNQNQNLRPPFMPNMHPPPPPFMNAANHNQMHLPHMGQSHVGMLGPQNSVVGNVNYNNP MFPHQGQVMQNAAQMNLSQLQGLAQGILNILQQPNMNMNMNMSMSIPNGQFCAPPYPVQNMNQQLPMQVSNPSQVAPYGM HPGLRPRPMFGFPNQVPVSQPMFPQNSIFSANPQMGHVPGNQVRPQIDPNEKKLVPPNVNTNAFVSSPFPSQQLQGNGSA PVNPHLAQPHHTNNSQPSAFMNSNSQEKPNSNIKANVPNSNWKGPPSKNFKNKPSRGGFQGGFQKSKFVNINNGKRGNGF PEGCKGANKGKAGHAGLNSEELKQEAKRSVTYSEQEIQQWREARRKNHPFKDNIQKSEDQKDTKVIDRGVLQKELKEVLA KQAELGIEVAEIPSHYLKNSENQGFQTEGKNSFTDKRKFQNKFNKKSDRRGRFGKRQKFSHNDISEKPALNKKKPTLLEK LLSADIKRDKSHLLQVFRFMVMNSFFKDSPDKPLIYPSVKVKEIGSEGGCEEKHLHTGKDALERGNEKTVQNIANHSIDN DHDSEDGESEDEGIGESDEEEGEILE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 74 | 578 | 505 | 7.4E-67 | – | |
| PANTHER | 74 | 578 | 505 | 7.4E-67 | – | |
| MobiDBLite | 188 | 336 | 149 | - | – | |
| MobiDBLite | 215 | 288 | 74 | - | – | |
| Pfam | 342 | 384 | 43 | 2.1E-8 | ||
| MobiDBLite | 528 | 586 | 59 | - | – | |
| MobiDBLite | 528 | 546 | 19 | - | – | |
| MobiDBLite | 564 | 586 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0135700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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