Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0141800.1

Overview

Field Value
Gene ID LotjaGi3g1v0141800
Transcript ID LotjaGi3g1v0141800.1
Lotus japonicus genome version Gifu v1.2
Description MADS-box transcription factor family protein; TAIR: AT5G60440.1 AGAMOUS-like 62; Swiss-Prot: sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62; TrEMBL-Plants: tr|A0A072VPP2|A0A072VPP2_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi3g1v0141800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:18812206..18813369) extracted from Lotus japonicus Gifu genome v1.2.

CCTATAAAATTATCCCTTCACACGCCATAGAAGAATGTGCCTACATCTCATACTCTAAACTCTTAACCCTCCATTTATCT CCACTTCATTCCTCTGCAGCCATGTCAACCTCTGGAAGGAAAGGTCGTGGCCGTCAAAAGATTGAAATGAAGAAAATGGA GAATGATAGCAACTTGCAGGTCACTTTCTCAAAGCGCCGCGGTGGGCTATTCAAGAAAGCCAGCGAGCTTTGCACCCTCT GCGGCGTAGAGATAGCTCTCATCGTCTTCTCCCCTGGCCAGAAAGTCTTCTCATTCGGCAATCCCAGTGTGGAGGCCATC ATTGAGCGCTACCTCTCGCGTGGCCCGACTCAACCAACCGTCACCATGCACTACATCGAGGCTCAGCGAAACGCCAACGT GCGTGAGCTGAACAAATATCTGTCTCAGATCAACAACCAGCTTGACGCTGATATGAAGCGCAAGGAGGAGCTGAATTGTC GGCTAAAAGCGATGCAATCTCAGTTCTGGTGGGCTTGTCTGATTGAAAGCATGGACAAGTCTATGCTTGAGAAGTACAGG GTTGCTCTGGTTGAGCTCAAGAAGAAGGTCACTTCTTATTGTGATGAGCTTTTCATTGAGGATGCAAACGTTGGTAGTGC TGTCGCTACCAACCCACCAATCAATCAATTTTTTTCTGGTGGACCCTCAAATTCAATGATCCCTCTCCACCACCCACCAC CACCACCTCCTCAAGTGTTTCCACCACTGTATTTTCAGGCACCCATGATGCAGGCTAATCACTTTTTAGGTGGCTTTAAT AACAATGGAGGATATGGAGGACCACCCCCAGGGTTCTACTAATACAATCATCCCGTGATGATGATGAGATGATGCCCTAT CTGTTTTAAATTTCAGCGTTGTTTTCAATTTTCATAGCACACAGACTTAACTAGTTTCATGTATGGGATATAGTTAGTCT TGCTTAGGGTTTGAATTTTAATTACTGCTTCATGTTTTTGAATTTTTTTCCCGCTATGTTATTGCTCTTCTTTGTAGTTG GGAAATGTTTTGGTGTAGTTTAATATATGAATTCTTTAAATAAAGGGCATCTTATTAGAAAAAAGTTTTGTCTTGTATGT TACTTTCTCTCCAAATTTGTAATTAATCTCTTCGTATGAATCAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0141800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACCTCTGGAAGGAAAGGTCGTGGCCGTCAAAAGATTGAAATGAAGAAAATGGAGAATGATAGCAACTTGCAGGT CACTTTCTCAAAGCGCCGCGGTGGGCTATTCAAGAAAGCCAGCGAGCTTTGCACCCTCTGCGGCGTAGAGATAGCTCTCA TCGTCTTCTCCCCTGGCCAGAAAGTCTTCTCATTCGGCAATCCCAGTGTGGAGGCCATCATTGAGCGCTACCTCTCGCGT GGCCCGACTCAACCAACCGTCACCATGCACTACATCGAGGCTCAGCGAAACGCCAACGTGCGTGAGCTGAACAAATATCT GTCTCAGATCAACAACCAGCTTGACGCTGATATGAAGCGCAAGGAGGAGCTGAATTGTCGGCTAAAAGCGATGCAATCTC AGTTCTGGTGGGCTTGTCTGATTGAAAGCATGGACAAGTCTATGCTTGAGAAGTACAGGGTTGCTCTGGTTGAGCTCAAG AAGAAGGTCACTTCTTATTGTGATGAGCTTTTCATTGAGGATGCAAACGTTGGTAGTGCTGTCGCTACCAACCCACCAAT CAATCAATTTTTTTCTGGTGGACCCTCAAATTCAATGATCCCTCTCCACCACCCACCACCACCACCTCCTCAAGTGTTTC CACCACTGTATTTTCAGGCACCCATGATGCAGGCTAATCACTTTTTAGGTGGCTTTAATAACAATGGAGGATATGGAGGA CCACCCCCAGGGTTCTACTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0141800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTSGRKGRGRQKIEMKKMENDSNLQVTFSKRRGGLFKKASELCTLCGVEIALIVFSPGQKVFSFGNPSVEAIIERYLSR GPTQPTVTMHYIEAQRNANVRELNKYLSQINNQLDADMKRKEELNCRLKAMQSQFWWACLIESMDKSMLEKYRVALVELK KKVTSYCDELFIEDANVGSAVATNPPINQFFSGGPSNSMIPLHHPPPPPPQVFPPLYFQAPMMQANHFLGGFNNNGGYGG PPPGFY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11945
8 183 176 2.1E-56 –
PANTHER
PTHR11945:SF164
8 183 176 2.1E-56 –
SMART
SM00432
9 68 60 6.5E-33
IPR002100
ProSiteProfiles
PS50066
9 69 61 25.427
IPR002100
CDD
cd00265
10 78 69 1.12208E-38
IPR033896
SUPERFAMILY
SSF55455
10 93 84 1.83E-29
IPR036879
PRINTS
PR00404
11 31 21 3.3E-20
IPR002100
Pfam
PF00319
18 65 48 9.6E-25
IPR002100
Gene3D
G3DSA:3.40.1810.10
21 101 81 2.7E-27
IPR036879
PRINTS
PR00404
31 46 16 3.3E-20
IPR002100
PRINTS
PR00404
46 67 22 3.3E-20
IPR002100
Coils
Coil
107 134 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0141800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…