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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0142100 |
| Transcript ID | LotjaGi3g1v0142100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Inositol-1,4,5-trisphosphate 5-phosphatase 4 isoform 1; TAIR: AT1G70160.1 zinc finger MYND domain protein; Swiss-Prot: sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26; TrEMBL-Plants: tr|K7MRT1|K7MRT1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0142100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18851783..18856413) extracted from Lotus japonicus Gifu genome v1.2.
TATTCTCTTGATCATCACAATATTAATTGGGTTTGGGTTTGGGCCGCGTGACTCGAGCGCTCTGAAAGTGCCGTTTAGAG TAAACGACGTGCTTCCCATTCTCCCACGCGGCGTTTCATGGCCGGTTCTCAATAACCTCCACAGTGCCGTTGATTTGCTT CCTTATTTTGTCGGTTCCGTCACTCCCACCACCAATGGCTCCATTCAATGGAAAGGGGCTTGCTTCTTTGATAACAAAGC CACTCTTGAGTTCACTCACACAAATCATTCTTCATCGCGTGCCGTTCTCTATCTCCAGGTTCCTTTTTTCATCCCTTTTA CCTTCCTAAATTTGAAGCATCAAATTAATTTAATGGGCTCAATATGCATTCATACTCATAATTTGATTTAACATTCAATA ATGAACGAGTGGTTGGTTTGAGTGGTACATGTTTTATTCCCTTAAGTAAGGTCCTGAGTTCGAGTGTTGTGGATGGAAAA AATCTCCGTTGGGAGTGTTAGCCGCTCCACCATGATGTGGACGTTCCTGGCTTGAACAAAAATTGCCTCCAGTGTTGGAT ACCTATAAGCACCGAAAAGACATTCAATAGGCATATTTAGGAACTTTGAGTGTAATTTTCCTTATATACTACAAAGACTA ATTCAACTAGTTATTTTAATTTAGTGATGTCAATTTTGTTGTATTTGGTTTTGGTGAAAAATAGTTGTTTTTTCTTATAC AGACTGAGGCTGCACATAGCTGGACCTGCATGGATTTGTATGTTTTTGCAACGCCTTACAGGATTACATGGGACTACTAC TTCTCTGCTCAAGAACACACATTGAAGTTTGACTCATGGGAAGAGCCTGCGGAATTGGAATATGTACTTTTTTTTATCAA ACAAATGGTTCTTTATTTTGTTTAAATCTTGTTATTGCTAACCGATCATTATTGTTAATGAATTGAACAGGTCAAGCAGC ACGGGGTTTCTGTGTTTCTTATGCCATCAGGTATGCTGGGAACCCTGCTTTCTCTGATTGATGTTTTGCCTCTGTTCGCT AACAATGCATGGGGTCAGAAAGCCAACCTGGATTTCCTGAAGAAGCACATGGGGGCCACGTTTGAGAAACGTTCTCAGCC GTGGCGTGCAACTATTGACCCCGCAGATGTTCATTCAGGAGACTTCTTAGCTGTGTCAAAGATCCGAGGTAGGTGGGGTG GTTTTGAGACACTAGAAAAGTGGGTAACCGGTTCCTTCGCAGGTCATACTGCGGTTTGCTTGAAAGATGATATGGGTAAT TTATGGGTTGGCGAATCAGGGCATGAGAATGAAGAGGTATAATAACAGGATGAAGTTTTCTAGAATATCCTTTTATTTGT TTACTAAAATTATTCTTGTATTGCCTGATGAATGAGAATGTTGTAGTCGTTTAGGATGGTAACGCCTCTGATCTATTTTA GTAGATTGATAGCCTTACTTGGTGGTCTGTCCCTGTTCAGGGTGAAGAAATAATAGTGGTAATTCCATGGGAAGAGTGGT GGGAATTGGCTCTTAAAGATAGTTCCAATCCACAGATAGCCTTACTTCCCCTGCATCCAGACTTGCGTGCAAAATTTAAC TCCACTGCAGCATGGGAGTATGCGCGGAGCATGTCAGGCAAGCCATATGGTTATCACAATATGATATTCAGTTGGATTGA CACTGTAGCTGACAACTATCCTCCACCACTTGATGCTCACTTGGTAGTAAACTTTTCCTTATTGGTTAAAACAAAACAAT AGACAATGAGAATATCCAATGTAACCTCAGATTGTATGAACAACATACTGTTTTTTGAGTAGACTACTGTACATTTTATG AAACAATTATGTTTGAACTGGTTGCTTGAAGGTAATTTGAATCAAAAGTGTAAAACAGTCTAGGGAAGAAATAGGTAGAG GTTTTGACATTGGAAAGCAACTTCCTTACTGTTAGAGACACAGAAAGGTACTTGACAATGGGATAGAAGGACTATGTTGG CATCAAGAATTTTCATGAATTTTGCTTATTGCTCGTGATACATACATGTTATCTTTTCTCTTATAAGGGAAAGGGTTCTC GCTTTCTTCCCTGTGTTTGTGCAAATATTGAACCTAAAAGCACATGAAGCAACCAATCTACACCCTCCTCACTTCCCTGC ATATAACAAATTCTAACATTAAGTTCTTAGGCTCAGACTTCAAGTGCTATGGATGTCTGATTTTGAATATCTTGTTCTCT GTGCAGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCTGCTTATTCTGCAAATATGTGGAATGAAGCATTGAA TAAGCGGTTAGGGACTGAGGTAGGTCTTTGCCGCTGATTTGAACCTTTAGTGTGATAAAGAATCTCCATTTACTATATAA GCATATGTAGTCCTTCTTTCTTTTTATTTTCTGAATAAAAGAAGGTTTTCACTGAGATAAAGAGAAGGGAGAATATAAAA TCCTGAAGGAAAAAAAACCTGCTTAAAAATCTGATAGTTTCCATTCCAATAAAATGCTCCGAAGTGTAGTCTTTCGTTAA TTGCTGATATTTTGTGGGGAACAATTCTGTCCAAACTAGAAGTAGACTTATCTGAGTTGTAGGTTTGCCAATGACCTCAA AGTTTGCTTCTGGTGCTGTCTACTGTATTTGTAACTAACTAGCCCATTGTTTTAAGACTGTAATCAGTGAATTCTAGAAA GAATGTTCATTCTCTCAAACAACCTTTAAATTGTAGTTCAAAGCTATTCTTGAATAACAAAAATTGTTCTTTTCATTCAC CACTGGTACCTATCAATTGGTATTAGAGCTCCGATCTTGGAGCTAGGGGTCTTGAACGATTCCAACATTTGATGGAAGGG AGGCTTATTGTTGGCCGATCAATTTAGAGTAGTATTTGAATCCATTCTAGTACCTGATTAGAAGAAGCTATGATGGGTTT CGATGGGGGTGAGTGAGAGTGCTCGTTGTTGGTGGTTTTGCTGGTGAAGGAGCAACCACCATAAGGCAACATGGGGGAAT TTGTGAAGGCACTGCTCAAGAAGTTTCAACTAGAGGTGAATCCAGACATACCAATCTCGGTTCAAGATGAAGAAGCAGTA ACTGATTTAGAATCTGTAATATATCAGTGGGGAAAAAAGATTCCAAAGTAAAAGCCTAGCCAATAGTTGTTAGGGTTAGT TAGATAGAGGGAGTTCCAACTAGTTAGTTAAAAGGCGTGAATTCGAGATTGAGTGAGGTGAGACTATAAATTAGAGGGGG AAAGATTAGGGAGGTTATCTATATTGTAATAACTAATAAGGGAATCTAGGGAGAGTGATGGTTTTCTCAAACAACCAGAA AATTGTAGCTCATAGCTACTTGAATAATAATCAAATTTTCTTCTGATACACTGCTGGTATTTAACTATTTATCAAGTATC AACTCACGTTAGGATCACTTTCAAGGTATGATACTTGAGTCCCACTATGAGATTTTGGTGTGTGGTTTATAAGGCCCTAG ACTCTCAAACTACAACGACTAGCTTTTGTGGTATGGTTCTCACAAAGTTCTTATCAATTGGTATCATAGCCTTACACCAT GTCTGCTAGCTGCAAACAAGGGCCACCGCTCAGATTGAGGAGTGTGGAGGGATGTTATGATTCCTCTCGCAAGTTATTTG AGTCCCACATTGGACGTATGAGATTCTAGTGTGAGATTTATAAGGCCTTTGTTACTCCAAGTCTCCATCTACAACGGCTA GCTTTTGTGATATGTGTTTCCCGAGGTTCTTATAAGACTTCAATATGGAAATATCTTGGTCAATTGTGAAATCTCTCAAG TATGTTAGTATTTTAGGTTTTGCATTTTGTGAGCTGTAATGTTTGTGAGTGTATAGAGCATGCTGGTTTGTATAAATTTC CTGCAAGTTTTTGTATGCTGCAGTTATTATGATTAAATATCTGAATAGTTCCTCATGGGAAAATTCCACTGTATGACTGT GACTGAATACATCATGTTGTCATCTTTGTTTACTGGTATGATAGGAACTTTGAGGGCATATTTTTCTGATCTATACACTA GTTGCTTCTTCATTCATATTATTAATGGGATCTCTGATTTTTGTTTGCTTTCAGGGTTTGGATTTGCATGATATTATAGT AGAGACTGAGAAGCGCGGCATACCATTTGATCAATTACTCACCATTCCTGAACAAGATGAATGGGTATATAGTGATGGGA AATCAACAACTTGTGTTGCCTTTATTCTTTCAATGTATAAAGAGGCTGGGATTTTTGGTCCCTTTTCTAGCTCCATTCAA GTAACTGAGTTCACTGTAAGTCATGATTTCTCTGTGATTGAGTGAACCTTGGGACATCATATTTCCTTTTACCAATGTTT CTGTGTTCTTTTATGCAGATTCGCGATGCGTACATGCTCAGATTATTTGAGGATAACCAAACACGCCTGCCAAGTTGGTG CAACAATGAGAATGACCGGCTTCCATTCTGCCAGATTCTTGGAGAATACAGGATGGAACTGCCTGGCTATAACACCTTGG AGCCATATGCCCACATGAATGAGTACTGCCCTTCCCTTCCTCCAACTTATGATCGGCCTTCTCGATGTTAG
CDS sequence (LotjaGi3g1v0142100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGTATGTTTTTGCAACGCCTTACAGGATTACATGGGACTACTACTTCTCTGCTCAAGAACACACATTGAAGTT TGACTCATGGGAAGAGCCTGCGGAATTGGAATATGTCAAGCAGCACGGGGTTTCTGTGTTTCTTATGCCATCAGGTATGC TGGGAACCCTGCTTTCTCTGATTGATGTTTTGCCTCTGTTCGCTAACAATGCATGGGGTCAGAAAGCCAACCTGGATTTC CTGAAGAAGCACATGGGGGCCACGTTTGAGAAACGTTCTCAGCCGTGGCGTGCAACTATTGACCCCGCAGATGTTCATTC AGGAGACTTCTTAGCTGTGTCAAAGATCCGAGGTAGGTGGGGTGGTTTTGAGACACTAGAAAAGTGGGTAACCGGTTCCT TCGCAGGTCATACTGCGGTTTGCTTGAAAGATGATATGGGTAATTTATGGGTTGGCGAATCAGGGCATGAGAATGAAGAG GGTGAAGAAATAATAGTGGTAATTCCATGGGAAGAGTGGTGGGAATTGGCTCTTAAAGATAGTTCCAATCCACAGATAGC CTTACTTCCCCTGCATCCAGACTTGCGTGCAAAATTTAACTCCACTGCAGCATGGGAGTATGCGCGGAGCATGTCAGGCA AGCCATATGGTTATCACAATATGATATTCAGTTGGATTGACACTGTAGCTGACAACTATCCTCCACCACTTGATGCTCAC TTGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCTGCTTATTCTGCAAATATGTGGAATGAAGCATTGAATAA GCGGTTAGGGACTGAGGGTTTGGATTTGCATGATATTATAGTAGAGACTGAGAAGCGCGGCATACCATTTGATCAATTAC TCACCATTCCTGAACAAGATGAATGGGTATATAGTGATGGGAAATCAACAACTTGTGTTGCCTTTATTCTTTCAATGTAT AAAGAGGCTGGGATTTTTGGTCCCTTTTCTAGCTCCATTCAAGTAACTGAGTTCACTATTCGCGATGCGTACATGCTCAG ATTATTTGAGGATAACCAAACACGCCTGCCAAGTTGGTGCAACAATGAGAATGACCGGCTTCCATTCTGCCAGATTCTTG GAGAATACAGGATGGAACTGCCTGGCTATAACACCTTGGAGCCATATGCCCACATGAATGAGTACTGCCCTTCCCTTCCT CCAACTTATGATCGGCCTTCTCGATGTTAG
Protein sequence (LotjaGi3g1v0142100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLYVFATPYRITWDYYFSAQEHTLKFDSWEEPAELEYVKQHGVSVFLMPSGMLGTLLSLIDVLPLFANNAWGQKANLDF LKKHMGATFEKRSQPWRATIDPADVHSGDFLAVSKIRGRWGGFETLEKWVTGSFAGHTAVCLKDDMGNLWVGESGHENEE GEEIIVVIPWEEWWELALKDSSNPQIALLPLHPDLRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTVADNYPPPLDAH LVISVMSMWTRLQPAYSANMWNEALNKRLGTEGLDLHDIIVETEKRGIPFDQLLTIPEQDEWVYSDGKSTTCVAFILSMY KEAGIFGPFSSSIQVTEFTIRDAYMLRLFEDNQTRLPSWCNNENDRLPFCQILGEYRMELPGYNTLEPYAHMNEYCPSLP PTYDRPSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 4.1E-278 | – | |
| PANTHER | 1 | 409 | 409 | 4.1E-278 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0142100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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