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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0152000 |
| Transcript ID | LotjaGi3g1v0152000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/RNI/FBD-like domain protein; TAIR: AT1G32375.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375; TrEMBL-Plants: tr|A0A072TR07|A0A072TR07_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0152000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20422211..20430841) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCCCAATTCCATACCCTAAACCTTGGTTTCCCACATTCCCAACCGCGTCTGAGTCTGACTCTGAAGGATTCGGAAG CTGGCTGCTTCGATTCCAATTCTGTTACTTCCCATTTCCCCTTTCATATCTCTGTTCTTTGCGCTCTTGCAATTGCAGGA TTTAGCTGGTTTGAGCGTCGCTACCTCCATTTATGCGGTATTTGCTTCTGCTCATAGAAACAAGGTTATATAGTTTTTCT TATTATTTCCCCTTGCTGCATTTGAACCTCTTCGGTGTATGTGCACTCCATTGTAAACCATTACATCCTCTTATACAGAT AGGTCCTTTTAATTTGTTTTTGTTGATTAAGGCCCCTTCTTCTTTCAATCAGCCTCTGCATTTTCTACCTAAATGTGATT TTAGGTATAACAGAAAGGCAAAGAAGTCTATGAGGATATATTGAATTGAATTCATGATGGTATTTTTTAATGCTGAGAGT ATGATAAGAACCTTGGGAGAACCACACCACAAAAGCTAGCTATTGTAATTGGAGAGCCCAAGGCCTTATAAACCCCACAT TAGAATCCCATACCTCCAATGTGGGACTCAAGTCCCATACCTTGCAATTGGGTTCCTAACAAAGTATATCATAGTTAATG TTTGTGTAGGGCATCATGTGCTGTACTTGTTGTTGGAGCATTTGTAGTTAGTAATACTCATGAGAAGAAAGCAAATGCTT GATAAGATTTTGATTAGCTTATTAACTACTCCCTAATTGACAAGGAGTTAGTTACAAAATTACGTTGGTTAGCTCCCTAG GGAAATAATCCCCTTCTCCAGTGTTATTTAAGTTTTTGCTTTCTAAATTTAAATATGTTTACATGCATTGCCAGCATCTA ACTGTTGTCAGCATCTGAACTGCATTTTCGTCATAGGTTTTGCATGAGGCTACTGTTGAAGTACCAAAACCAAGATCAGG AAGTAGCTACTCCTATCTCAGAAGATTTGATCTAGTATCTTTGTCATGGTATGAATGTTTATCTTATAAAGATACATTTT TATTTTGATGAATTGCCTTTTGTATTCTGCCTACCAAATCACCTGCTTTTTTAACTAGTCATGACTTATATCTGTTAGTA GGAACTGAAAAATTTCAGCGTACATGCTTCTATATAACCCTTCAGATAATTTCTCATTTCAGCATGTTTGGTATAGCTTT TTGCACTAACGTCAATGTACTTCACACCAGAAGCTTCACATGGGAGCTTCTATCTAGATGTAGTCTTGGACTCACCTGGG TGGCTACTGGGTTCCGAACACCTTCTAAAATTACCTTGCATCATTTTGGAGAAGCACAGACATAAACATCTTGGAAAAAA AGAGAGGGGGAAAAGTGTAGATAGACTTCCTTATGGCAGAGTTCGAAAAACATAACCTATCTTTAATTTACAGATTGTCT ATTCTCCTCTTCATTCACCATCTTTGTGCTAGACTTCTTGTCAACAGTTATCTGTGAAAAATCATTTTTCCCCTGCTTTT TACATCAACCCTTTACTTTCCATTCTCCACTGTAAGGAGAATTTGAGATAAAAGAAAGATACTTTATTATTTGATAGGTA ATGAATTTTGGTAACCAAATATCAAAAGCATTGTTGAAATTATTTGTAGTATTCTACATAACTATTGATACTTCAATAAT AATACTTGATTTAGAAGTAAAATATTTATAGATTAGGTTCCTAGAGGTTTCCTAGTCAACTAGTAACTATAAAACAATAA AATCTTATCTTATCCTGGAGAGGTCCCGCCGTAGGGCGTTTCGGGAAGAATGTACCCCCAAGCTGAAGGTGACAGAGAAT AGCCACATGGCGGGCAGACGATTGCAAGGCGATTGGGCCGGGAATAGCGAGCCCCAACTAGCCCATTTAGCTTAAGGATT AGGGTTTCTATGTAACCACCCTATAAAAGGGAACTCTTGTACCTTGAAAATGGGCTTTTTGACATTTATCTAAAAAAAGC TAGAATATTACCTCACCCTGCTTCTACTACGGTTTGGGGCCTATACCCGTTCTGAGTGTTCATTCCGGAACATGTCCCAA TCTATCATAACAATATAACATCTATCATCCGAGGTTATATGGAGGTTCTTAGTGGTCTTGGTGCTTTGTTTTGGGTGCTT GGTTCATTGGTTTGATCCTGGTTGCGGGTTCGAGGGTTTTTGGCCTTGGTCTTTTATTTTATTTTGGGCTTTGGTGTTGT TTAGGGTGGTTTTTGCCCGGGTGTTAGGTTTGTTCTCTTTTGTCTGTTTGGGCCATTTTGTCATGGTCTTTTTGATGATT TTCTCTTTTTTCCTGTAGCAAATCAGTTGCGTTTGGCTTTCCTATTCGAGAGGCATGCTCTCAAACCTTGATTTATTAAT ATATATTTTCACTTTCTTAAAAAAACGGCGAGGCCTCGCTAAAGCTCCGCTTCTTGAACTTGAAACTCCCTGACATTAGA GAGTGCCCAGTTCTCTCCGCTTCTCCTTTCAGCAATATAAAATCTAATCTTAATAAACCATATCATAACAAATCTATTTC AAGAAAATATTTCATAATAGATATCTCTTATTAGATATCTCAACACTACCCCTCAAGCTAAAGCTTACTTAGCTTTAAGC TTGTAACAAATTGATCTCAACAATATATAGATATCTCTAAATAATGAGGATCTTGACGAATATCTGAATTGCATAGGTCA ACTTTTCGATCTTCTGCTAAATCAATGGTTAGACAACAGACAATAACTCATACTTGATCTGGCTGAGATCGGTGCAAGTC AAAAACTAATTCTACCGTAGTGTCGTAGGGTCAGCTGAGCCAGCGAACTACGATGGAAAACCAGCTACATTTACCCAAAT ATAAAACTAGGCTGAAGCAACAGCTAACGGCAACAACCACAAAATTTAAAACTCGAGGTTGATCGATTGATGGCATTTGA GACAATGGTGTCAACTTTGTCATCGATAACTGTCGAAAACACGCTAATAGCAGTTGAAGCCCTAAAACCCGAAAACCAAA AATCGATTCTAAAACATACAAAGATGACGTCCCAAGACTAAAAACACTGTAAATAACTCAGAATGAATAATAACAAAGAA AATAATAGATTCAAAAGATTAGAATACCCTCAGGTCATCACGAGGACTTGGTTTGCTTGCTTAATGCGAGTCGGGGAATA GGAAGTCCTCGGTATCTCTCTGATCTAATGATGGATGAATTGGGTAGAAAAGTCACCCTAGCATGTGATGGATCCATGCA TTAAGGATGGAACCGTGTGAGTACAACTTTGCACAGGGTCGAGAAAAATTTCTGCACATAACTACTCGTGAGCCCTCGAG ACAGCTCATTTCATTTTTGAAGGTGTTAAGATTCTCACGGGGATCAAAGTCAACCGTGTAGGATTTAACCACAGGAGCCT TCCGAGTTTTTCATGTATATGTATCGTGGCCAAATTTAGTGGGGATAAGGAAGCGGGAAGGGAAGGAATTCACCTTCGTC GTTGAGGTGTGATATAGCTGTCACTTCTCATGGACGACTTCCTCTAGAATCCCGACTCATGTTGTGGCTAAGTTCAGGGA TTTCCATTTGTGCTCCTTCATTAAGGAATGGAATCAGGGGTTCCAGATCTTCAATGTGCCTTTGGAAGACTGCAGTTCTT ATAGGACAGAAGGCGGTTGCAATGGATCTTTACCGACAAGGAGAAGGTTTACAACCCTTTGGTTCCGCTCTAATTCACGC GACAGTTGTTGCTCTGACACTCTAATGACGTTGTCGCAAAGTCCAAGCACAACGCGTGCAAGGCTATTGTCGTGGTGGCT GGAATGGTTGGTTGTCCTCTATTTCCACGTGATCACCGTTCTGGTTAACTTCTTCGTTGGTAATAATTGCATGGCCCTCT CGCGAGGGGTACAACTTTCTTGCTTTCTTCTAGTGGTCACCATAAGAGATTTGAATGGGAGTACAATTTGAATTTTCCCA CACACGGTGCCTTTTTTCGGGTTATCGAACTTGATAATGTGGCTTAGGCCTAGGTTGATATGATTTGTATTCTGAAAGGC TCCTTGTGAAGGGTCTCATTCTTCTCGTATTCAGGTATCAGGATGGCACTAGAGGCAGGTACCTACAAGGCACTGTGAAG CTAAGGTCAGCAAGACTAAGAATGAAATAGGATTTAAGTTAGGTAGTGTGTGCCTGAGATGTGTCTTTGTATCATGTATA TATACATAGAGTTGCAACAAACCTTAGGAGAATGAATTGTAGATATGACATAATCATATTACATATATAGTTCGGTATAC TTGATATTACCTTAATTAGTAATCCTTATTTTCACAATATGTAGGACCTTGTCAATACTAGGCCAATTCATTGGGCCTAT GATTTTATTTCGTCCAAGAAATAAAATTTTAAACAAAGAAATAAGTTAATGCACCGCCATGCGGTTGTGTTTGAATCCTT GAGGAATTCGGTCCATGCTTTTATTCATCATTAAGTATTGCCTATTAAAAAGCTTTATCATTTCATAAAAAGAAGTATAC TTTCGTATCAAAATCGTACACGTGTCGTGAAACATAAATTATGAATTTTTCCCTATTATTCGTAGTCAAATATCTATCAA TTCAACTTCCCCATATTAAATCTATTTACTGTGTTCAACGTTGACAATTCACTACATTTAATTTTGATACATGTAACGGA TACACATATTAAAAGCTTTTAATTGCAAAAATAAATGTTCTTTGAATTTTTTTATCGACAATCTTAGAATTTTATATATA TATATATATATATATATATATATATATATATATATATATAGAGGTTGTCAGAGCACTACTTCGTTGTTGGTCAAGAAATG GATCCAACAACACAGAACGAAGAAGACACAGGGGGTATTGATAGAATCAATAGTCTATCAAACTCAATTTTGTGCCACAT CTTATCATTCCTCCCGACCAAAACGTGTGTGGCGACAAGCCTTGTGTGTCGCAGGTGGCGCAACCTCTGGGAGCACGTCA AGGTGCTAAACCTTTGTGATGATGCTTTTAAGGCTTATGGGAACCTAGACTTGTTCGAACGCTTTGCCATTTTTGTGAAC GGAGTGCTCGCTCTAAGAAAGTGTCGTGAAATTCAAAAGCTATGTCTCAAATGTGAGTACTCACTTGTAGACATGCTCTC CTCCATCTCTATCACCACATGGGTTCGCGCCGCCATTGGACCCCAACTCGAGGAGTTGCGCCTCGATCTCTACCCTATGG ATGGACCTGAGTTTGTGGTCCCTCGTACCCTTTTCACTTGCACCAATCTCGTCTCTCTCTATCTCTGTGGTCCGATCAAC ATTCATAATCTTTCTTTAGTTCAGTTGCCATCCTTGAAGGTCTTGCAACTCAACATCGTCTCTGTGGATTCCATTCAGGC ACTTTTGTATGGTTGTCCAATCCTTGAAACTCTTGATCTCTCTTTCTCGACCACAAGCTTCCCCATGCTTCGTTTCCCTC CTTCTTTAAAGAGGTTGAATTTTGTGGTTTACGACAAGTCAGGGACTTACCTTGAATTTGACACCCCTTGTCTTAACTAT CTCAGAATCGGCCAAAGCTTTGCCCCCTTCAAGTGTTCCTATTGTCACTTACACAAAGTGGTGGAAGCGAATCTTGATGT TTATGTCGCATATGAGTATATGTTTCGCAAGCTTTTACATGCTCTTTCTGGAGTAAAGCATCTAGTCTTGGGTTGTTCTA CAACAAAGGTACAATGGAGTTTATAATTTTGCCATAGTTCATACATAATACATCAAGTTATTTAGTTTTGTGCTAATAAT GTCTTGTATGTGTAAACAGAACATGATTCGTGCCCCTACTCTTGATATTCCAAAATTTCGCTATTTACATGAGTTGGAGC TCGTTCTACCACATTTCAACATGAGTTTTGTGGTGAAAATACTCGAGAAATGTCATATGCTTCGACTTCTCACAATTGAG AATAACAATGTTAGTTGAACTCTCAAGTTTAATTATATTTACCTTTGCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATCATTGTTTGAATATGCTTCTTATATGAACCTTG TTGGTGCCAGGAACCATCCAAATGGGGAAAACCACCTAGGGCTCCTATTTTTCATCATGTATTACACCTGACCTTTATTC ACTATAAAGGATATCAAGGATTCACTGATGAGCTAGAGTTTCTTGCGTATGTTTTACGAGAAGGAATTGTTTTGGAGAGA ATGATTATATCTACTGATAGATTTTTAGACATTCAACAGAAGAACAAAGTTCTCAAAAACTTATTGGCATTACCAAGGTG CTCCAGCATGTGTGAAATTAAGTTTGATTGCGCTACATCTCCTTAAGGTATATACTCTCATCATAACTATTATATATGGC TTGCTAATTCAAAGATGACTGGAATTTGATTTTCTCCATATGGAAATGACCTAGTGATTCTTTTCTATCTCTTCATGACC CTTCCATAGTAATTTATTTATGTATTGTCCTAAAGTTGTGTTATCTATTTTATTGCTTAGTATTGCGCTACTTCAATATT GTGTATTGTTTTGGTTTTTGCTATAAGATGTTAGTCAATTCCTGTAAGTTTTAACTGACAAGGTGTGATATTTAAATAGA GGTTATATTTCAAAGATTTTTTTTTTAAGTTATACTACAATAAAATTTGTAGTAGATTTATTTGGCTACTTATACATGTA ACTTGGCCATTTCAAAGTTTGTTAAAGGAAGAAAAGCAATATTTTTTTATAAAATGGGCCTAGTTTTTTAGTGTTCTTCA AGAGGATAGTTGTTATCTATGATACTTTTAAACTAGTAACCCTTTGTATGATTCTACCATTTTGAATTTTTCCTGTAGTT TTACTAAATAAGTAGTCTGATTTGAATTTTTAGTTAATAGTTAATACTAACTAAATGGAATGATTTGTAAATCCTAATTA TATATTGATTGAATCTGACTATCTGAGTAAACTATTAGTCTAAAATTTATGATATAGTAGCGTAGATTAGGCATTTGCAA AGTTCTCGTTATCTAGGCTTCCTTGTTGGTGATATATTTAGTGGAATATGATGACTTTCTTCTGCTTGACTTGTTCCTTT GTATGTTGTGTAGTACTTGTTTGCCTTACTACTAGTAAGGCAAACAAGTACTACCAAACATAAAAAGGAAACATAAAGAA ATCTAGGGGTGTTCATAACCAAACCAAACCAAACTGAACTAAACCGCTCAAACCAAACCAAAAAACCAAAATATGAACTA ACTGATAACCCAAAAAAACCGAAACCTTGAAATCTGCTATTCTGTTAATGGATTGGTTCGGTTTTCAGTTGTCATGTCCA ATGCCGAACCAATCCAAACTGAACTGAACGTATTATATATACTAATATACTTGTATTATCGTATATAAAATTACATCTGC GCCCATATTTCATACTACTTTTCACTTATGTCCCATAGTTTGAAGTTTAAACCTAATTTGAAGAGCGAACTGTGGCTGTG ATTCTGAATGTGTTACCTCCCCTGCTCTCCGAACCTCTCTGTTCGCCACTCTGTCCTTTCTACAATTTGAAGAGGCAACC TGGTCATCGATTGACCTAGGTCCTCTTTTGCCATCATGAGCTCAAATCTGTGAAGAAAGGGTTTGCACCTATTTGTTCCT GGCTTTCTACTATGGGAGTGCTCTTTGCTGCCTTTGTTGCCTTGGTGTTATTGATTCTGATTGCTAACTTTGTTGGTTTT TTAACTTTGTTGTAAATGACTTTACGCTAATGGTTAAACAATGGACAACAGAGGCGGAAAACTGTTTATTGATTGATTAG TAGCATTTTGGCACAACAGGGTTGAAATTTGTGCTTTCCAAGTTTCAAGTTTCCATTATTTGTTTTGAAGCAATCAAACC CACTTTCCATTTGCATTCTAGTTGATGTATGCTTTCAAAAAATACCCAATGATGTACAATTAACAACTGTTAAAAATGTT GTATATTCATTCTGATACATATTTCTTTCTCTGTTTCCATTTTTGTGTTTGGTAGTACTTGTTTGCCTTACTGCCCAGTT AATAGGTTACTCCTTCTAGAGCAAAATAGATATCATAAATATATTACTTCACTTGTTTGCCTGCTAATTAATAGGCTACT CTTTCTAGAGCAAAATAATTTTCAAAAACCTGCTGAGTAACTTGTTTGTCTTACTGCCCAGTTTTAAAGGAATCATCTAT TTCTTTCTCAAGATGATTCTTTTTCATGTCTTCATATAGTAATATTTTTTATCTGCTATATGTTGATTATCTTTAGTTTT GCAGACAAAATATGCTGGAAGAGTGAAGTTTGAACGAAGTGAAAGCTAGCTAACACCAAGGAGCTACAACTGATTACTTG ATTTAGTTGTTTTGTCTTTGAGATGAAGTATTAAACTATTAAGGATTGGATTTGAGTTGTATTGTCTCTGTTGGATGTTG TCCGTTTGAGTTTTTGGATTTATTGGTGATATTTTATATTTGTCTTGACTTTTTAATTTCAAACATAAAAT
CDS sequence (LotjaGi3g1v0152000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATGATTCGTGCCCCTACTCTTGATATTCCAAAATTTCGCTATTTACATGAGTTGGAGCTCGTTCTACCACATTT CAACATGAGTTTTGTGGTGAAAATACTCGAGAAATGTCATATGCTTCGACTTCTCACAATTGAGAATAACAATGAACCAT CCAAATGGGGAAAACCACCTAGGGCTCCTATTTTTCATCATGTATTACACCTGACCTTTATTCACTATAAAGGATATCAA GGATTCACTGATGAGCTAGAGTTTCTTGCGTATGTTTTACGAGAAGGAATTGTTTTGGAGAGAATGATTATATCTACTGA TAGATTTTTAGACATTCAACAGAAGAACAAAGTTCTCAAAAACTTATTGGCATTACCAAGGTGCTCCAGCATGTGTGAAA TTAAGTTTGATTGCGCTACATCTCCTTAA
Protein sequence (LotjaGi3g1v0152000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMIRAPTLDIPKFRYLHELELVLPHFNMSFVVKILEKCHMLRLLTIENNNEPSKWGKPPRAPIFHHVLHLTFIHYKGYQ GFTDELEFLAYVLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKFDCATSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 68 | 137 | 70 | 1.3E-7 | ||
| Pfam | 70 | 104 | 35 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0152000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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