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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0152000 |
| Transcript ID | LotjaGi3g1v0152000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/RNI/FBD-like domain protein; TAIR: AT1G32375.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375; TrEMBL-Plants: tr|A0A072TR07|A0A072TR07_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0152000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20422211..20430842) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTTCCCAATTCCATACCCTAAACCTTGGTTTCCCACATTCCCAACCGCGTCTGAGTCTGACTCTGAAGGATTCGGAA GCTGGCTGCTTCGATTCCAATTCTGTTACTTCCCATTTCCCCTTTCATATCTCTGTTCTTTGCGCTCTTGCAATTGCAGG ATTTAGCTGGTTTGAGCGTCGCTACCTCCATTTATGCGGTATTTGCTTCTGCTCATAGAAACAAGGTTATATAGTTTTTC TTATTATTTCCCCTTGCTGCATTTGAACCTCTTCGGTGTATGTGCACTCCATTGTAAACCATTACATCCTCTTATACAGA TAGGTCCTTTTAATTTGTTTTTGTTGATTAAGGCCCCTTCTTCTTTCAATCAGCCTCTGCATTTTCTACCTAAATGTGAT TTTAGGTATAACAGAAAGGCAAAGAAGTCTATGAGGATATATTGAATTGAATTCATGATGGTATTTTTTAATGCTGAGAG TATGATAAGAACCTTGGGAGAACCACACCACAAAAGCTAGCTATTGTAATTGGAGAGCCCAAGGCCTTATAAACCCCACA TTAGAATCCCATACCTCCAATGTGGGACTCAAGTCCCATACCTTGCAATTGGGTTCCTAACAAAGTATATCATAGTTAAT GTTTGTGTAGGGCATCATGTGCTGTACTTGTTGTTGGAGCATTTGTAGTTAGTAATACTCATGAGAAGAAAGCAAATGCT TGATAAGATTTTGATTAGCTTATTAACTACTCCCTAATTGACAAGGAGTTAGTTACAAAATTACGTTGGTTAGCTCCCTA GGGAAATAATCCCCTTCTCCAGTGTTATTTAAGTTTTTGCTTTCTAAATTTAAATATGTTTACATGCATTGCCAGCATCT AACTGTTGTCAGCATCTGAACTGCATTTTCGTCATAGGTTTTGCATGAGGCTACTGTTGAAGTACCAAAACCAAGATCAG GAAGTAGCTACTCCTATCTCAGAAGATTTGATCTAGTATCTTTGTCATGGTATGAATGTTTATCTTATAAAGATACATTT TTATTTTGATGAATTGCCTTTTGTATTCTGCCTACCAAATCACCTGCTTTTTTAACTAGTCATGACTTATATCTGTTAGT AGGAACTGAAAAATTTCAGCGTACATGCTTCTATATAACCCTTCAGATAATTTCTCATTTCAGCATGTTTGGTATAGCTT TTTGCACTAACGTCAATGTACTTCACACCAGAAGCTTCACATGGGAGCTTCTATCTAGATGTAGTCTTGGACTCACCTGG GTGGCTACTGGGTTCCGAACACCTTCTAAAATTACCTTGCATCATTTTGGAGAAGCACAGACATAAACATCTTGGAAAAA AAGAGAGGGGGAAAAGTGTAGATAGACTTCCTTATGGCAGAGTTCGAAAAACATAACCTATCTTTAATTTACAGATTGTC TATTCTCCTCTTCATTCACCATCTTTGTGCTAGACTTCTTGTCAACAGTTATCTGTGAAAAATCATTTTTCCCCTGCTTT TTACATCAACCCTTTACTTTCCATTCTCCACTGTAAGGAGAATTTGAGATAAAAGAAAGATACTTTATTATTTGATAGGT AATGAATTTTGGTAACCAAATATCAAAAGCATTGTTGAAATTATTTGTAGTATTCTACATAACTATTGATACTTCAATAA TAATACTTGATTTAGAAGTAAAATATTTATAGATTAGGTTCCTAGAGGTTTCCTAGTCAACTAGTAACTATAAAACAATA AAATCTTATCTTATCCTGGAGAGGTCCCGCCGTAGGGCGTTTCGGGAAGAATGTACCCCCAAGCTGAAGGTGACAGAGAA TAGCCACATGGCGGGCAGACGATTGCAAGGCGATTGGGCCGGGAATAGCGAGCCCCAACTAGCCCATTTAGCTTAAGGAT TAGGGTTTCTATGTAACCACCCTATAAAAGGGAACTCTTGTACCTTGAAAATGGGCTTTTTGACATTTATCTAAAAAAAG CTAGAATATTACCTCACCCTGCTTCTACTACGGTTTGGGGCCTATACCCGTTCTGAGTGTTCATTCCGGAACATGTCCCA ATCTATCATAACAATATAACATCTATCATCCGAGGTTATATGGAGGTTCTTAGTGGTCTTGGTGCTTTGTTTTGGGTGCT TGGTTCATTGGTTTGATCCTGGTTGCGGGTTCGAGGGTTTTTGGCCTTGGTCTTTTATTTTATTTTGGGCTTTGGTGTTG TTTAGGGTGGTTTTTGCCCGGGTGTTAGGTTTGTTCTCTTTTGTCTGTTTGGGCCATTTTGTCATGGTCTTTTTGATGAT TTTCTCTTTTTTCCTGTAGCAAATCAGTTGCGTTTGGCTTTCCTATTCGAGAGGCATGCTCTCAAACCTTGATTTATTAA TATATATTTTCACTTTCTTAAAAAAACGGCGAGGCCTCGCTAAAGCTCCGCTTCTTGAACTTGAAACTCCCTGACATTAG AGAGTGCCCAGTTCTCTCCGCTTCTCCTTTCAGCAATATAAAATCTAATCTTAATAAACCATATCATAACAAATCTATTT CAAGAAAATATTTCATAATAGATATCTCTTATTAGATATCTCAACACTACCCCTCAAGCTAAAGCTTACTTAGCTTTAAG CTTGTAACAAATTGATCTCAACAATATATAGATATCTCTAAATAATGAGGATCTTGACGAATATCTGAATTGCATAGGTC AACTTTTCGATCTTCTGCTAAATCAATGGTTAGACAACAGACAATAACTCATACTTGATCTGGCTGAGATCGGTGCAAGT CAAAAACTAATTCTACCGTAGTGTCGTAGGGTCAGCTGAGCCAGCGAACTACGATGGAAAACCAGCTACATTTACCCAAA TATAAAACTAGGCTGAAGCAACAGCTAACGGCAACAACCACAAAATTTAAAACTCGAGGTTGATCGATTGATGGCATTTG AGACAATGGTGTCAACTTTGTCATCGATAACTGTCGAAAACACGCTAATAGCAGTTGAAGCCCTAAAACCCGAAAACCAA AAATCGATTCTAAAACATACAAAGATGACGTCCCAAGACTAAAAACACTGTAAATAACTCAGAATGAATAATAACAAAGA AAATAATAGATTCAAAAGATTAGAATACCCTCAGGTCATCACGAGGACTTGGTTTGCTTGCTTAATGCGAGTCGGGGAAT AGGAAGTCCTCGGTATCTCTCTGATCTAATGATGGATGAATTGGGTAGAAAAGTCACCCTAGCATGTGATGGATCCATGC ATTAAGGATGGAACCGTGTGAGTACAACTTTGCACAGGGTCGAGAAAAATTTCTGCACATAACTACTCGTGAGCCCTCGA GACAGCTCATTTCATTTTTGAAGGTGTTAAGATTCTCACGGGGATCAAAGTCAACCGTGTAGGATTTAACCACAGGAGCC TTCCGAGTTTTTCATGTATATGTATCGTGGCCAAATTTAGTGGGGATAAGGAAGCGGGAAGGGAAGGAATTCACCTTCGT CGTTGAGGTGTGATATAGCTGTCACTTCTCATGGACGACTTCCTCTAGAATCCCGACTCATGTTGTGGCTAAGTTCAGGG ATTTCCATTTGTGCTCCTTCATTAAGGAATGGAATCAGGGGTTCCAGATCTTCAATGTGCCTTTGGAAGACTGCAGTTCT TATAGGACAGAAGGCGGTTGCAATGGATCTTTACCGACAAGGAGAAGGTTTACAACCCTTTGGTTCCGCTCTAATTCACG CGACAGTTGTTGCTCTGACACTCTAATGACGTTGTCGCAAAGTCCAAGCACAACGCGTGCAAGGCTATTGTCGTGGTGGC TGGAATGGTTGGTTGTCCTCTATTTCCACGTGATCACCGTTCTGGTTAACTTCTTCGTTGGTAATAATTGCATGGCCCTC TCGCGAGGGGTACAACTTTCTTGCTTTCTTCTAGTGGTCACCATAAGAGATTTGAATGGGAGTACAATTTGAATTTTCCC ACACACGGTGCCTTTTTTCGGGTTATCGAACTTGATAATGTGGCTTAGGCCTAGGTTGATATGATTTGTATTCTGAAAGG CTCCTTGTGAAGGGTCTCATTCTTCTCGTATTCAGGTATCAGGATGGCACTAGAGGCAGGTACCTACAAGGCACTGTGAA GCTAAGGTCAGCAAGACTAAGAATGAAATAGGATTTAAGTTAGGTAGTGTGTGCCTGAGATGTGTCTTTGTATCATGTAT ATATACATAGAGTTGCAACAAACCTTAGGAGAATGAATTGTAGATATGACATAATCATATTACATATATAGTTCGGTATA CTTGATATTACCTTAATTAGTAATCCTTATTTTCACAATATGTAGGACCTTGTCAATACTAGGCCAATTCATTGGGCCTA TGATTTTATTTCGTCCAAGAAATAAAATTTTAAACAAAGAAATAAGTTAATGCACCGCCATGCGGTTGTGTTTGAATCCT TGAGGAATTCGGTCCATGCTTTTATTCATCATTAAGTATTGCCTATTAAAAAGCTTTATCATTTCATAAAAAGAAGTATA CTTTCGTATCAAAATCGTACACGTGTCGTGAAACATAAATTATGAATTTTTCCCTATTATTCGTAGTCAAATATCTATCA ATTCAACTTCCCCATATTAAATCTATTTACTGTGTTCAACGTTGACAATTCACTACATTTAATTTTGATACATGTAACGG ATACACATATTAAAAGCTTTTAATTGCAAAAATAAATGTTCTTTGAATTTTTTTATCGACAATCTTAGAATTTTATATAT ATATATATATATATATATATATATATATATATATATATATAGAGGTTGTCAGAGCACTACTTCGTTGTTGGTCAAGAAAT GGATCCAACAACACAGAACGAAGAAGACACAGGGGGTATTGATAGAATCAATAGTCTATCAAACTCAATTTTGTGCCACA TCTTATCATTCCTCCCGACCAAAACGTGTGTGGCGACAAGCCTTGTGTGTCGCAGGTGGCGCAACCTCTGGGAGCACGTC AAGGTGCTAAACCTTTGTGATGATGCTTTTAAGGCTTATGGGAACCTAGACTTGTTCGAACGCTTTGCCATTTTTGTGAA CGGAGTGCTCGCTCTAAGAAAGTGTCGTGAAATTCAAAAGCTATGTCTCAAATGTGAGTACTCACTTGTAGACATGCTCT CCTCCATCTCTATCACCACATGGGTTCGCGCCGCCATTGGACCCCAACTCGAGGAGTTGCGCCTCGATCTCTACCCTATG GATGGACCTGAGTTTGTGGTCCCTCGTACCCTTTTCACTTGCACCAATCTCGTCTCTCTCTATCTCTGTGGTCCGATCAA CATTCATAATCTTTCTTTAGTTCAGTTGCCATCCTTGAAGGTCTTGCAACTCAACATCGTCTCTGTGGATTCCATTCAGG CACTTTTGTATGGTTGTCCAATCCTTGAAACTCTTGATCTCTCTTTCTCGACCACAAGCTTCCCCATGCTTCGTTTCCCT CCTTCTTTAAAGAGGTTGAATTTTGTGGTTTACGACAAGTCAGGGACTTACCTTGAATTTGACACCCCTTGTCTTAACTA TCTCAGAATCGGCCAAAGCTTTGCCCCCTTCAAGTGTTCCTATTGTCACTTACACAAAGTGGTGGAAGCGAATCTTGATG TTTATGTCGCATATGAGTATATGTTTCGCAAGCTTTTACATGCTCTTTCTGGAGTAAAGCATCTAGTCTTGGGTTGTTCT ACAACAAAGGTACAATGGAGTTTATAATTTTGCCATAGTTCATACATAATACATCAAGTTATTTAGTTTTGTGCTAATAA TGTCTTGTATGTGTAAACAGAACATGATTCGTGCCCCTACTCTTGATATTCCAAAATTTCGCTATTTACATGAGTTGGAG CTCGTTCTACCACATTTCAACATGAGTTTTGTGGTGAAAATACTCGAGAAATGTCATATGCTTCGACTTCTCACAATTGA GAATAACAATGTTAGTTGAACTCTCAAGTTTAATTATATTTACCTTTGCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATCATTGTTTGAATATGCTTCTTATATGAACCTT GTTGGTGCCAGGAACCATCCAAATGGGGAAAACCACCTAGGGCTCCTATTTTTCATCATGTATTACACCTGACCTTTATT CACTATAAAGGATATCAAGGATTCACTGATGAGCTAGAGTTTCTTGCGTATGTTTTACGAGAAGGAATTGTTTTGGAGAG AATGATTATATCTACTGATAGATTTTTAGACATTCAACAGAAGAACAAAGTTCTCAAAAACTTATTGGCATTACCAAGGT GCTCCAGCATGTGTGAAATTAAGTTTGATTGCGCTACATCTCCTTAAGGTATATACTCTCATCATAACTATTATATATGG CTTGCTAATTCAAAGATGACTGGAATTTGATTTTCTCCATATGGAAATGACCTAGTGATTCTTTTCTATCTCTTCATGAC CCTTCCATAGTAATTTATTTATGTATTGTCCTAAAGTTGTGTTATCTATTTTATTGCTTAGTATTGCGCTACTTCAATAT TGTGTATTGTTTTGGTTTTTGCTATAAGATGTTAGTCAATTCCTGTAAGTTTTAACTGACAAGGTGTGATATTTAAATAG AGGTTATATTTCAAAGATTTTTTTTTTAAGTTATACTACAATAAAATTTGTAGTAGATTTATTTGGCTACTTATACATGT AACTTGGCCATTTCAAAGTTTGTTAAAGGAAGAAAAGCAATATTTTTTTATAAAATGGGCCTAGTTTTTTAGTGTTCTTC AAGAGGATAGTTGTTATCTATGATACTTTTAAACTAGTAACCCTTTGTATGATTCTACCATTTTGAATTTTTCCTGTAGT TTTACTAAATAAGTAGTCTGATTTGAATTTTTAGTTAATAGTTAATACTAACTAAATGGAATGATTTGTAAATCCTAATT ATATATTGATTGAATCTGACTATCTGAGTAAACTATTAGTCTAAAATTTATGATATAGTAGCGTAGATTAGGCATTTGCA AAGTTCTCGTTATCTAGGCTTCCTTGTTGGTGATATATTTAGTGGAATATGATGACTTTCTTCTGCTTGACTTGTTCCTT TGTATGTTGTGTAGTACTTGTTTGCCTTACTACTAGTAAGGCAAACAAGTACTACCAAACATAAAAAGGAAACATAAAGA AATCTAGGGGTGTTCATAACCAAACCAAACCAAACTGAACTAAACCGCTCAAACCAAACCAAAAAACCAAAATATGAACT AACTGATAACCCAAAAAAACCGAAACCTTGAAATCTGCTATTCTGTTAATGGATTGGTTCGGTTTTCAGTTGTCATGTCC AATGCCGAACCAATCCAAACTGAACTGAACGTATTATATATACTAATATACTTGTATTATCGTATATAAAATTACATCTG CGCCCATATTTCATACTACTTTTCACTTATGTCCCATAGTTTGAAGTTTAAACCTAATTTGAAGAGCGAACTGTGGCTGT GATTCTGAATGTGTTACCTCCCCTGCTCTCCGAACCTCTCTGTTCGCCACTCTGTCCTTTCTACAATTTGAAGAGGCAAC CTGGTCATCGATTGACCTAGGTCCTCTTTTGCCATCATGAGCTCAAATCTGTGAAGAAAGGGTTTGCACCTATTTGTTCC TGGCTTTCTACTATGGGAGTGCTCTTTGCTGCCTTTGTTGCCTTGGTGTTATTGATTCTGATTGCTAACTTTGTTGGTTT TTTAACTTTGTTGTAAATGACTTTACGCTAATGGTTAAACAATGGACAACAGAGGCGGAAAACTGTTTATTGATTGATTA GTAGCATTTTGGCACAACAGGGTTGAAATTTGTGCTTTCCAAGTTTCAAGTTTCCATTATTTGTTTTGAAGCAATCAAAC CCACTTTCCATTTGCATTCTAGTTGATGTATGCTTTCAAAAAATACCCAATGATGTACAATTAACAACTGTTAAAAATGT TGTATATTCATTCTGATACATATTTCTTTCTCTGTTTCCATTTTTGTGTTTGGTAGTACTTGTTTGCCTTACTGCCCAGT TAATAGGTTACTCCTTCTAGAGCAAAATAGATATCATAAATATATTACTTCACTTGTTTGCCTGCTAATTAATAGGCTAC TCTTTCTAGAGCAAAATAATTTTCAAAAACCTGCTGAGTAACTTGTTTGTCTTACTGCCCAGTTTTAAAGGAATCATCTA TTTCTTTCTCAAGATGATTCTTTTTCATGTCTTCATATAGTAATATTTTTTATCTGCTATATGTTGATTATCTTTAGTTT TGCAGACAAAATATGCTGGAAGAGTGAAGTTTGAACGAAGTGAAAGCTAGCTAACACCAAGGAGCTACAACTGATTACTT GATTTAGTTGTTTTGTCTTTGAGATGAAGTATTAAACTATTAAGGATTGGATTTGAGTTGTATTGTCTCTGTTGGATGTT GTCCGTTTGAGTTTTTGGATTTATTGGTGATATTTTATATTTGTCTTGACTTTTTAATTTCAAACATAAAAT
CDS sequence (LotjaGi3g1v0152000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATGATTCGTGCCCCTACTCTTGATATTCCAAAATTTCGCTATTTACATGAGTTGGAGCTCGTTCTACCACATTT CAACATGAGTTTTGTGGTGAAAATACTCGAGAAATGTCATATGCTTCGACTTCTCACAATTGAGAATAACAATGAACCAT CCAAATGGGGAAAACCACCTAGGGCTCCTATTTTTCATCATGTATTACACCTGACCTTTATTCACTATAAAGGATATCAA GGATTCACTGATGAGCTAGAGTTTCTTGCGTATGTTTTACGAGAAGGAATTGTTTTGGAGAGAATGATTATATCTACTGA TAGATTTTTAGACATTCAACAGAAGAACAAAGTTCTCAAAAACTTATTGGCATTACCAAGGTGCTCCAGCATGTGTGAAA TTAAGTTTGATTGCGCTACATCTCCTTAA
Protein sequence (LotjaGi3g1v0152000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMIRAPTLDIPKFRYLHELELVLPHFNMSFVVKILEKCHMLRLLTIENNNEPSKWGKPPRAPIFHHVLHLTFIHYKGYQ GFTDELEFLAYVLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKFDCATSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 68 | 137 | 70 | 1.3E-7 | ||
| Pfam | 70 | 104 | 35 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0152000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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