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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0152300 |
| Transcript ID | LotjaGi3g1v0152300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TAF RNA polymerase I subunit A; TAIR: AT1G53200.1 TAF RNA polymerase I subunit A; Swiss-Prot: sp|Q9H792|PEAK1_HUMAN Pseudopodium-enriched atypical kinase 1; TrEMBL-Plants: tr|K7M292|K7M292_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0152300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20482445..20488114) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAGCCTAATTTTAATTAATCTAATCTATTTTCCCCATCAATCAAATGTGATTTAAATCATCGCAGAGAGAGATTGAG CTTCGCTTTATGCCGCCAAGCAGCGGTCGTGTTGGTCTCGCCCTAGCTCCGCCGTCCAGATTCGCCGCACCGGCTGCCCC TAAGGCGGCAGAGCGTACCAAACACCTGGCGGCGGACATCGTTTTGTGGCCGAGGTACCAGAAAACCAGGGGTTTTTCCT GAGCTGCCAAGTGAGTTTGTTATCTTTTTTACTTTTCATGCCCGACCACTGCAACTGGACACTGTTTTTCACATCAGATT GCTGCTTGTTCAATGTCTTTCAGTTTTGTTTAGGTTCTATAATTCTACTTTTGTGGTCTAATATCCTGTTATAGTTTTGG ACCATGCCTTCAATTACTATGTATATGTTATAAGTTGTAATCATGATTGTTAGTATCTAATTTAGTTAGCTTAAGTTTCA TCATACTGACCGATGCGTACGCGCAATAAAATCGTAAATCTGTTGTGCATTGTTGCGCAGGTAGCTAGGTCAATGGACAT TGAGGTGTTAGACATAGAAGACGAGAAGGTGTTGGACATAGAAGGCGAGAACAACAATGGCCGTGCCACCACCAAGAAGT CGAAACACCGCAAGAGAAAGGAGTATATGCATGATGATGGTCACGTGGAAACTCGAGAGAAGCTTGCGAAGAGGATTCTC TTGTCGCTGACCAGGCCATCCTACGTTCTTGAACTTGGCCCCAAGCCTTTTAGGTTGGAGCACCGTAGGAGATTATGCTA CCTGCTTCAGAGGCTTGTGAGGCAGCACAACTGGGTTGAAGCCAGCGGTGTTCTCAGTGCGTACTTGCAGGGAACCCTTA ATGACACCTCTCCCTTCAAGAATCGTTTTAAGTTTTGGGTATTCTCCTTAGTGATACTTATGTTCCCTTTTGCGCTCCTC CTAAAACTGTTATACTTTTTGCTGTAATTTGTTCTATCACTTATATCCTGCATTAGTTTCTGAACATCAGCATGTATGCT GGTATGTATGTAGGTTTTATTGGAGCTTCTGAAGCATATGGAAAGCCAATCTATTAATCCAACGAGGATCAAGAATATCT ATGATGTTTGGGCAAAGAAGAATGGATCAAAGAAGAATTGTCCATTAGAGGTATGCTTCAGAAAAGAAAACTTCCCCTAA ATGCTTTATAACAGTTACCTTTATGTTAAATGTCTACTCATTTACTTCATCATCTACGAACTAATTATGACTGGTACCTT GTTGTCAAGTCCCTAGAGGGTATCTCATTATTTTTCTAATTGAAATGGGACGCTTAAGGTTTAAGCCTGAGAAAAGTTGT AATGAGTGACAAAGAAACAGAGACAGAAGTACAATAACTTCAGTAAAAGATTAGAGTCTTCTAGATCACATGCATTTTCT TTTTACTTAGGGTGTAGCTCTATACTTTACGGAATATTTTCCTGTTTGTAGGGATGACAAGTTATAAATAATCTTCTAGT GCACTAAAAAGTTTCTAACAAATTATTAGTACTATCACATTGTTATAAGCTATAGTAGAAGAAGTGAACAGAAAAGTCAG TAGAGAGAGAGAGACATGCAGTATTCACTAGAGAGAGAGACATGCAGTATCACTAGAGACATGTAAATCATAAATTAACA TTCTGAAAACTCTTATAGAAAGAGAGGGGGAGGTAAGAGAAAAGATCTAGCCTGATGGCTGAGTTTAGTCCTAACCATCT AATACTCACTAGTTTATTATTATGATGAAGAATTTGCAAGCTTGATTGTTTAGTCTTCTGTTCTTGATGTATAATTTTTT TGTCAAGTAGAGCAGATATGCAGTTAATTTGGAGTTCATGTTATTCTGTCTTTCACAAGGCAATGCTGGGGATGCATATC AGCTTGCTCTGTGGTATGTAATATAGTTTTTAATGCTTAGTCCTTTGCCTCAGTAGAGATTCATGTGTTGCATGCATCAT GATGTCAAGTAACAAATTATTCCATAACTCATCATTGCTAGGTAACGTGCTCAACTGGTTGTATGGCATCATAACATGAC ATCAAATGCAAACTTTCCATTGAAAATGCTATCTTTTTATTTATTAATGATCATTTTTGCTTAACATTGTAGGGTTTGAG AAATAGTGTGATAACTAAGTTACTGGGATTGAGGGATCTAATATTTTTACTCTTCCTCTACTTTCCTTTATTCTCTCCTC TCTCTTTTTTATTTTGTCTTTTGGTTTCTTCTTTAGCCTCGAGCAAGAAAAAGTTGATATTGATCCCGTGTCAAAGATAA TGATGGGCTTGACATTCTATGAGCTTTGGTATTCTTCTATCCCCAAAGAATTTCAGTGGATAGATTCTGACCAATTTGAC TTACAAGAGAACTCACATGTGGATGAAACCTCATTCAGCAATGAAGTTGGACAGTCAGAGTGGCATGATTCAGTTGAAAC CCACATGGCTGACTCTCAATATCAATGTGATTCAGATGCCTCTGTCATGAATGATAGGAAAATTTCTAGGGATGTTGGCT TCAATGAAGATAGGGGAGTTTTCATGGAGGTTGATGTTAACCATAATAGAGAAAAACCGGATCAGAACTTTCATTCGCAA GGTTTTTACTTGAATTCTGAAGAACATGAAGGAATGGGAGACCCTTTTCCAAACAGTGGAGGTCATACACAAGATACCTT GTATGATCTTGGTAAGTTTTTTTATTTCCTGATTAATCATGTACAGGAGAAAATCTGTTCTTGTGGCTGCATACCTGCAC ATACATAATAGTCTGATTTTTTTTTTCCTCTTGCCCTTGATTACTTTTTATTTGGAAACCTCTGATTCAGACTCAGTGTA TATTACTCAGTGATTCTAGGTTTGGATTGTTATTAGTCTTTTACTCAACCGTAACCTTTATATTGATCTTCTTTTGCATT CACTTAGGGGGACTTGATTTGTGGTTATTGCCCTTGCGTTTTTCCAATGAGAACAGTTTAGAGGAGTTCATGTACAGGCA AAGAAATCAGCTTAATGACTATTATAAAAATGCAGTAAAATATTTGCAACTAGCTCTCAACTCAAAGCCCTCCGGATCAG CAGCATTACTTCCATTAATACAGGTATGGAGCATACCTATCAAATAATTGCCTTTATGATGAGTGATTAGGAGCTCAACC CTCCCAATCCCCATTGATCATCATTAAATTAAATTTCAGCACAACACCCAATTTTCTTCTTGTATGAAAGGGTGTATTAG AGATTTAAAAAAAAAGTATTCCCAAGTCTCCTCTCAACAATTTAAGCCTTTAGGATACTTGGTCCATTTCACATGCTATT GCTATTTGCCTATTTGGCCCTTTCTTCTACATGTACACACAATGTGAAATATCAGTAGCTTGGATTATTTGAAATCACTT TTCCTTAACTTGCACAAAGCAACTAATTGTGTTTTGCAATCTTATAGCTGATTTCCTTTCTTGTATGCACATGTTTGCAT CTTCTGTGAACATTAAATTACATGACAAATGTTTTCTAAATTGAATAATTTCTGGAAGCAAAATATCAAATTCCTTCTAT CATTTTTTATCAAGTTCTCCAATCATGTAGTGACATGTTTATAATTTTCTAAAATTTAACAATAAAGTTTTAATAAATGT CATTTAGTGTTTGAAATAAAGTCCATTTGTCATTGTTTGAATGGAGAACTTGAAAAAAAGATATAACTTGAGGTAAGTTT TTTCCTAATTTGTGAGATATTAGCAATTGCTTCAACTTATTTTATGTTGCCAGCTGCTGCTGATTGGAGGTCAAGTTGAT GAGGCTCTAAGTACGCTTGAGAAACAATGCTATGATTCATCCTCTATACTCCCCATTAGGTACACATCCCTTATATCTTA CGATTATTGATGAACATGTAGTCCTTAAACCAGCAATATGTGATCAGCAAGTTGTTGTATTTTACTCAAAATACCATTTT GTTATGTTCATAAAGTTGCTGATGTACAAAATTGCAGATTAAGGGCTGTTCTCTTGCAGCGTTTTGATCGAAACAACTCT CTCTTGCTTCATAGTTGTTTTGAGGATATATTAAAGAAGGATCCAACATGCCATGATGCTTTAGCAAAACTTAACAAGAT GCACCAAAATGGTACTTTCATTCTTCATAATTTTATTTATTTATATTATTTGGATAATTTTGGTATATCTGTCTCTCTCG CGTTGAGACCAATCTTTATCTTGAAAGGGAGTTGAAATAGATTCATGTGATGAAGAAAAGGGGGAAAGAAGAAGGAAACA TGATCTTCAAAGAGTTGGATACTGGAGTTCATTTTGGAATTACTGAAGAACTTCCTGCTTCAAAATTTTTCCTTAGCTGA CATATTCTATCATAACCTCTTAGAATACAAATAATTGAAGTTGTAATTTGATTGGATGTCACACGACTCACACCTTGGCT CTGCCTATCGTAGCCTTAGAGTTATTTGCTAATGATAACTTAATTGTTCTGATAAAGACAGAAATATCTATGCGAATGAA GATAACCTTTGCATAGTTCATTAATTGGTTTGTTCCTGATATTTTGTAGGAGACTATGCTCTTGAATCTCTTCTGGAAAT GGCTGCTTTACATTTAGATGCTACCGAAGCAGAACACAGTACATGGAGGGTGTTCTCTTCATGTTTCTATAAACTGTCTC TCATTGAAGAAGACTGCATGTCTATATGCTCTGTTCAAAATGAAAATGGACAGGGGCAACATTGTTCCTTTAACAGAACC CCAAAAATATTTACAGAGGGTGTATCAGGAAAATCTTGGAGACTTCGCTGTAGGTGGTGGCTAACAAGACATTTCAGCAA TAGCAAGCTTGAATCAGATATTGAAAATGGTAAATATTTTGTTTAGTTTTGATCAAACCATTTTACAATATTATCCAATC ATATTTTCCAATGATTCAAAGAGTTGGACTAAGATGATAACTACCTAGGAGGTTAAACTCTTTTAATGATGCTGCTCACT ATAAGATAACATGTGTGAACTTTTTTAAGTTCACTAGACATATTGTAACACATTTGTGCGCTATGTTTTATCCTAGCCAT GTTAATTTGCTTTACCAAATTTTATATGGTGCAGGTGATTTGCAGTTACTCACATGCAAAGCAGCATGTGCATCCTATAT GTATGGACAGGAGTTCAGCTATGTTGCCAAGACTTATTCACATTTAGAAAAGGAAAATAATAAGGACTTGCTCGTGTTCT TGGATGAGCATAAAAGATGTTATTTTGGATTTTATCAACAATATCAAAAGAAAACAACATATATAAGATAATGATGATAT GTTTTTGCGCTGTGAGTAATTATTATTTGCTTTCTTTATCTCAGTTTGGGTGGCTTTTATTTTCAACATTATTTACTCTG CAATTTGTAAGCATTCACATGTAACAGGGAAAAAATTACCTTCTAAAAAAATGGAGAATGAATGAAGAATGGGGTAAATA GAAAAATGCTGAGGAAAAAAAAAACAACAAAAGGCATTTTATTTTTCCCATCAGATTTATTTGAGGACAAAATTTGTGTA TGATTTAATTGTTTCCGATTTACCATTTTCAATGGCCTCTTCCTTTGTCTATATTTATTCCCCATATATA
CDS sequence (LotjaGi3g1v0152300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATTGAGGTGTTAGACATAGAAGACGAGAAGGTGTTGGACATAGAAGGCGAGAACAACAATGGCCGTGCCACCAC CAAGAAGTCGAAACACCGCAAGAGAAAGGAGTATATGCATGATGATGGTCACGTGGAAACTCGAGAGAAGCTTGCGAAGA GGATTCTCTTGTCGCTGACCAGGCCATCCTACGTTCTTGAACTTGGCCCCAAGCCTTTTAGGTTGGAGCACCGTAGGAGA TTATGCTACCTGCTTCAGAGGCTTGTGAGGCAGCACAACTGGGTTGAAGCCAGCGGTGTTCTCAGTGCGTACTTGCAGGG AACCCTTAATGACACCTCTCCCTTCAAGAATCGTTTTAAGTTTTGGGTTTTATTGGAGCTTCTGAAGCATATGGAAAGCC AATCTATTAATCCAACGAGGATCAAGAATATCTATGATGTTTGGGCAAAGAAGAATGGATCAAAGAAGAATTGTCCATTA GAGAGCAGATATGCAGTTAATTTGGAGTTCATGTTATTCTGTCTTTCACAAGGCAATGCTGGGGATGCATATCAGCTTGC TCTGTGCCTCGAGCAAGAAAAAGTTGATATTGATCCCGTGTCAAAGATAATGATGGGCTTGACATTCTATGAGCTTTGGT ATTCTTCTATCCCCAAAGAATTTCAGTGGATAGATTCTGACCAATTTGACTTACAAGAGAACTCACATGTGGATGAAACC TCATTCAGCAATGAAGTTGGACAGTCAGAGTGGCATGATTCAGTTGAAACCCACATGGCTGACTCTCAATATCAATGTGA TTCAGATGCCTCTGTCATGAATGATAGGAAAATTTCTAGGGATGTTGGCTTCAATGAAGATAGGGGAGTTTTCATGGAGG TTGATGTTAACCATAATAGAGAAAAACCGGATCAGAACTTTCATTCGCAAGGTTTTTACTTGAATTCTGAAGAACATGAA GGAATGGGAGACCCTTTTCCAAACAGTGGAGGTCATACACAAGATACCTTGTATGATCTTGGGGGACTTGATTTGTGGTT ATTGCCCTTGCGTTTTTCCAATGAGAACAGTTTAGAGGAGTTCATGTACAGGCAAAGAAATCAGCTTAATGACTATTATA AAAATGCAGTAAAATATTTGCAACTAGCTCTCAACTCAAAGCCCTCCGGATCAGCAGCATTACTTCCATTAATACAGCTG CTGCTGATTGGAGGTCAAGTTGATGAGGCTCTAAGTACGCTTGAGAAACAATGCTATGATTCATCCTCTATACTCCCCAT TAGATTAAGGGCTGTTCTCTTGCAGCGTTTTGATCGAAACAACTCTCTCTTGCTTCATAGTTGTTTTGAGGATATATTAA AGAAGGATCCAACATGCCATGATGCTTTAGCAAAACTTAACAAGATGCACCAAAATGGAGACTATGCTCTTGAATCTCTT CTGGAAATGGCTGCTTTACATTTAGATGCTACCGAAGCAGAACACAGTACATGGAGGGTGTTCTCTTCATGTTTCTATAA ACTGTCTCTCATTGAAGAAGACTGCATGTCTATATGCTCTGTTCAAAATGAAAATGGACAGGGGCAACATTGTTCCTTTA ACAGAACCCCAAAAATATTTACAGAGGGTGTATCAGGAAAATCTTGGAGACTTCGCTGTAGGTGGTGGCTAACAAGACAT TTCAGCAATAGCAAGCTTGAATCAGATATTGAAAATGGTGATTTGCAGTTACTCACATGCAAAGCAGCATGTGCATCCTA TATGTATGGACAGGAGTTCAGCTATGTTGCCAAGACTTATTCACATTTAGAAAAGGAAAATAATAAGGACTTGCTCGTGT TCTTGGATGAGCATAAAAGATGTTATTTTGGATTTTATCAACAATATCAAAAGAAAACAACATATATAAGATAA
Protein sequence (LotjaGi3g1v0152300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIEVLDIEDEKVLDIEGENNNGRATTKKSKHRKRKEYMHDDGHVETREKLAKRILLSLTRPSYVLELGPKPFRLEHRRR LCYLLQRLVRQHNWVEASGVLSAYLQGTLNDTSPFKNRFKFWVLLELLKHMESQSINPTRIKNIYDVWAKKNGSKKNCPL ESRYAVNLEFMLFCLSQGNAGDAYQLALCLEQEKVDIDPVSKIMMGLTFYELWYSSIPKEFQWIDSDQFDLQENSHVDET SFSNEVGQSEWHDSVETHMADSQYQCDSDASVMNDRKISRDVGFNEDRGVFMEVDVNHNREKPDQNFHSQGFYLNSEEHE GMGDPFPNSGGHTQDTLYDLGGLDLWLLPLRFSNENSLEEFMYRQRNQLNDYYKNAVKYLQLALNSKPSGSAALLPLIQL LLIGGQVDEALSTLEKQCYDSSSILPIRLRAVLLQRFDRNNSLLLHSCFEDILKKDPTCHDALAKLNKMHQNGDYALESL LEMAALHLDATEAEHSTWRVFSSCFYKLSLIEEDCMSICSVQNENGQGQHCSFNRTPKIFTEGVSGKSWRLRCRWWLTRH FSNSKLESDIENGDLQLLTCKAACASYMYGQEFSYVAKTYSHLEKENNKDLLVFLDEHKRCYFGFYQQYQKKTTYIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 633 | 612 | 1.6E-233 | – | |
| Pfam | 88 | 600 | 513 | 3.4E-103 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0152300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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