Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0159700.1

Overview

Field Value
Gene ID LotjaGi3g1v0159700
Transcript ID LotjaGi3g1v0159700.1
Lotus japonicus genome version Gifu v1.2
Description Replication factor-A carboxy-terminal domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|I3S126|I3S126_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0159700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:21782092..21784516) extracted from Lotus japonicus Gifu genome v1.2.

TGAAGGCAGTGTTTATAAGATTACATATTTCGTTGTTGTGGACAACAATGGTGCATATCGTGCTGCTGAACATGAGTACA AAATTATGTTCAATAGCAAAACAAAGATTCAAATTGATCAGTGTGATGACATTCCTAGATTTGGTTTAACATTGAAGGAT ACAACAGAAATTCAGAGTACAATGGGGGAGTCTGACTTCTTGCTTGGTAAGTTTGTTATGTTAATTTTGTTTTGCACTTT GAGATTTTTGTCACTGTGATATTTGTAGTTGTTGTGAAGTAAATCTATTAAGTAGTTGATATCTGATGTTAATTACTATA ATTTTTAGATGTTATTGGTTTGGTTACTGGTGTTTCTGATGAGCAACAATTCTCTAAATCTGGAAATGTTACTAGAAGGA TTGAGTTGGAGATTACTGATCACAAGTATGTTTTTTCTAACATTCCATATAATTGATATTGATTACTACCTTCTTTGATT TTCTGTCTGTTTTATTTTTTCTGCAGGGGAAAGATAAAAATGGCTTTATTTGGAAACTATGTTGATGTTCTTAAAGGGTT TCTTGCTACTGATGGAGTTGGACTTGCTGTGATTGTTGTGCAGTTGGCCAAAGTTAAAACATACAGAGGTATAATACCTT ATTTCACTCTGAGATCATTAGTTAGGTCAATTTTTATTCTTAGTGTTATCAGACATTCATACTTATTTAGTTTTCTTTGA CCAATGTGTAGGAGAAGTTGTTATTCAGAATGTTATGCATGCTACCAAGTTATTGTGGAATGCTGAGATTCCAGAAGTTG CTGCCTTTCGTGATGGGTAATATTAGTTTTCTTTGACCAATGGGTAATATTGTTTCCTGCACTGTATTAGTCATATAGTT GTGAACTAATTTTATTTGTTTTATTGTTGTCAAGTTTGGCCTTACATGGTCTTGATGCTGATATTCCTATTGGGCAAATT GGTGGTGGCTTCCACAACATGCCTGCCAATGAGGAGTTCATTACAATGTTTCCTAGGAAGAACATTGTGGAGCTTCATGA CACAGCTGAGGTAATTTCCAGAACTCTGTGTTAACCCATTTTTTTTTCTTTGCTGGGTAGTATCATTAAAATTAATTTCT TTCAATGTAGGAGGGTTTGTTTTTAATCCTAGCAGAGATTAGTGGTTTAGTTGATGGCGAAAAGTGGTGGTACACTTCAT GTCACTGCCGCAGATCTGTTACTATTGAGGATGGAATTTATTTCTGTGCTTCTTGCTCCACTCATGTTATTGATGTTACT CCTAGGTGTGTAGTTCTTAGAATCAAGGATTATTTTATCCCCTTTGTTTTGACATTAAATAGTGATGAACTTTATTTATT TTTGTTCAGGTTTCGCATAAAATTTGAGGTTTCTGATGGAGATGAGGTTGCTACCTTTGCAATCTTTGACACTGATTGTG AGAACATGCTAAAGAAGAGCTGCAGGGAGTTGGTTCTAGGCTCAAAGGTGAATATTGGTTTTTAAATTGCAACACAATTT TTCATTTCATTCTGTTGCCCTGCACAAATATGTTGGAATGTCATTTTTTATTTTTGTCTATTTCTCTAAATATACTTCAG GGAAAATCTGTTGAAGAATACCCTGATGAAATAAAGGCATTGATTGGGAAGGAAGCTATTTTTAAAGTTGAAAAGTCAAT TGATCATGGTATGAAGTATGATGATTCATACAAAGTCAAAAAGATTTGCGATGATTTGTCTATTATTCAGCTCTTCAAGG ACAAGACAAAGATTCAAACACCAACTACGGTATCTTATGTCTTGAAGTTATTCAATCTCACTATAGTTTTCTGTTATCTA TGTGAACTGCATTAATTTATTTCCTTATTTAACTATACTTATTTGAATTATTTTTAATTTGGTCTTATTTCTGCAGCTTA TTACTGATCCATTTTGTTCCAAATCTGCATCTGATGACCAAGAATCTGTATTCAGTGATAAATCCATTGGTTCTTCTAGC CAAATATCTGCAGTTCCTAAAAGCACTCTCTCTCTTGATGATCTTTCACAATTTACAGAGTCATCAGTTACTTCTGCAGC TTCCAAATCTGATGGTGATGGTGCAACCATCTGCAAACCTCCAAGGAAGAAGAGGTTGGTGCAAGTAAAGGCTGAGAAGT GAAGCCGCTTAGTGATTTATTAGGGACATCTTTAGATTAATTTTGTGCCTGTGCCTTGATGCTTATCAGATTATATTTTT TGTGTATGACTATTATGAACTCCTTCGACTATGTTTGTTTACTAACTATCATAGTCTGCCAATCATTTATGTGGTTGGCT ATTATGTAATATAAGAATATTAGATGTCCCTGTATTTGAATTATGGAGTTTATGTTGTGTAATATCCTAGACTCATGTTG TTCTTAACTTATTCTAATATATGTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0159700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCAATAGCAAAACAAAGATTCAAATTGATCAGTGTGATGACATTCCTAGATTTGGTTTAACATTGAAGGATACAAC AGAAATTCAGAGTACAATGGGGGAGTCTGACTTCTTGCTTGATGTTATTGGTTTGGTTACTGGTGTTTCTGATGAGCAAC AATTCTCTAAATCTGGAAATGTTACTAGAAGGATTGAGTTGGAGATTACTGATCACAAGGGAAAGATAAAAATGGCTTTA TTTGGAAACTATGTTGATGTTCTTAAAGGGTTTCTTGCTACTGATGGAGTTGGACTTGCTGTGATTGTTGTGCAGTTGGC CAAAGTTAAAACATACAGAGGAGAAGTTGTTATTCAGAATGTTATGCATGCTACCAAGTTATTGTGGAATGCTGAGATTC CAGAAGTTGCTGCCTTTCGTGATGGTTTGGCCTTACATGGTCTTGATGCTGATATTCCTATTGGGCAAATTGGTGGTGGC TTCCACAACATGCCTGCCAATGAGGAGTTCATTACAATGTTTCCTAGGAAGAACATTGTGGAGCTTCATGACACAGCTGA GGAGGGTTTGTTTTTAATCCTAGCAGAGATTAGTGGTTTAGTTGATGGCGAAAAGTGGTGGTACACTTCATGTCACTGCC GCAGATCTGTTACTATTGAGGATGGAATTTATTTCTGTGCTTCTTGCTCCACTCATGTTATTGATGTTACTCCTAGGTTT CGCATAAAATTTGAGGTTTCTGATGGAGATGAGGTTGCTACCTTTGCAATCTTTGACACTGATTGTGAGAACATGCTAAA GAAGAGCTGCAGGGAGTTGGTTCTAGGCTCAAAGGGAAAATCTGTTGAAGAATACCCTGATGAAATAAAGGCATTGATTG GGAAGGAAGCTATTTTTAAAGTTGAAAAGTCAATTGATCATGGTATGAAGTATGATGATTCATACAAAGTCAAAAAGATT TGCGATGATTTGTCTATTATTCAGCTCTTCAAGGACAAGACAAAGATTCAAACACCAACTACGCTTATTACTGATCCATT TTGTTCCAAATCTGCATCTGATGACCAAGAATCTGTATTCAGTGATAAATCCATTGGTTCTTCTAGCCAAATATCTGCAG TTCCTAAAAGCACTCTCTCTCTTGATGATCTTTCACAATTTACAGAGTCATCAGTTACTTCTGCAGCTTCCAAATCTGAT GGTGATGGTGCAACCATCTGCAAACCTCCAAGGAAGAAGAGGTTGGTGCAAGTAAAGGCTGAGAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0159700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFNSKTKIQIDQCDDIPRFGLTLKDTTEIQSTMGESDFLLDVIGLVTGVSDEQQFSKSGNVTRRIELEITDHKGKIKMAL FGNYVDVLKGFLATDGVGLAVIVVQLAKVKTYRGEVVIQNVMHATKLLWNAEIPEVAAFRDGLALHGLDADIPIGQIGGG FHNMPANEEFITMFPRKNIVELHDTAEEGLFLILAEISGLVDGEKWWYTSCHCRRSVTIEDGIYFCASCSTHVIDVTPRF RIKFEVSDGDEVATFAIFDTDCENMLKKSCRELVLGSKGKSVEEYPDEIKALIGKEAIFKVEKSIDHGMKYDDSYKVKKI CDDLSIIQLFKDKTKIQTPTTLITDPFCSKSASDDQESVFSDKSIGSSSQISAVPKSTLSLDDLSQFTESSVTSAASKSD GDGATICKPPRKKRLVQVKAEK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23273
2 349 348 2.6E-62 –
PANTHER
PTHR23273:SF37
2 349 348 2.6E-62 –
Gene3D
G3DSA:2.40.50.140
14 151 138 2.4E-18 –
SUPERFAMILY
SSF50249
32 149 118 1.82E-14
IPR012340
CDD
cd04481
41 140 100 3.3163E-11 –
Gene3D
G3DSA:2.40.50.140
156 334 179 3.6E-15 –
SUPERFAMILY
SSF50249
177 319 143 8.05E-18
IPR012340
CDD
cd04476
182 320 139 6.17469E-24
IPR013955
Pfam
PF08646
201 318 118 7.5E-10
IPR013955
MobiDBLite
mobidb-lite
392 422 31 - –
MobiDBLite
mobidb-lite
405 422 18 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0159700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…