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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0164000 |
Transcript ID | LotjaGi3g1v0164000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-directed DNA polymerase (Reverse transcriptase)-related family protein; TAIR: AT3G24255.3 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151U748|A0A151U748_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi3g1v0164000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22332934..22333904) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTCAAAGTCTGTTCTGTTATCCCTTCCGGTCTATACTATGCAAGCGCTTTGGCTTCCGGAAGCGGTTTGTGATCATG TAGACAGGATGGTGAGGAACTGTATTTGGGCCAAAGGTAACAACAGTAGAAGTTGGAACCTTGTTGCATGGCGGGATATA ACACAACCTAAGGATAAGGGAGGTTTGGGACTGAGGAGTGCGCGGGAGAACAACGAGGCTATGCTGAGGAAGATGGTGCA TAGCTTGCTGGCCGAGAAAGATAAAATGTGGGTGCAGGTGCTGGCTGGAAAATACTTGCCGGAAGGGAATATTTTGACAG CAGATCACCAGCGGGGAGAGTCGTATCTTTGGCGTGGAATTTTGAAGGCGAAGGCGGCGGTTGCACACGGTTTTGGGGCT CGATTGGGTGACGGAAATTCTTCATTATGGTATAGTAATTGGCTGGGGACAGGATTGTTAGCGACACAGATTCCATTTCG TTCGTATCTCCGATACAGATTTGCGGGTTGCAGATTTGTGGCAAGGTGGTCAGTGGTGTTTTGATAGGCTCTACACGCAG CTACCTGATGAAATCAAGACGGAGATTGGGATGGTGGCAGTTCCGATACAACCTGAGGGCCCAGACCAGATTCTGTGGAA GGGAGAGAGTGATGGGTGCTACTCGACGTCTTCAGCGTACAACTTGCTGATAGAGACCAATCTTCCAGCGTCGCGAATGT GGAAGCTCATTTGGAAGTGTAAAGCTCCGGAGAAGGTACGCTTCTTCCTTTGGTTAGCTGCTAGGGAGGCTCTCCCCACT AACCAGCGGCGACACCACTGTCATCTTGCGATGTCTCCGTCATGCACGAGATGCGGATCACAGGTTGAGGACGCGGAGCA CATCTTGAGGTGCTGTCCCATTGCCGTGCAGGTATGGGGCTACTTTCGAGCTTTGTTGCCAAGGATGCCAAGCACGCTGA GCTTTCGTGAG
CDS sequence (LotjaGi3g1v0164000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCGCTTTGGCTTCCGGAAGCGGTTTGTGATCATGTAGACAGGATGGTGAGGAACTGTATTTGGGCCAAAGGTAA CAACAGTAGAAGTTGGAACCTTGTTGCATGGCGGGATATAACACAACCTAAGGATAAGGGAGGTTTGGGACTGAGGAGTG CGCGGGAGAACAACGAGGCTATGCTGAGGAAGATGGTGCATAGCTTGCTGGCCGAGAAAGATAAAATGTGGGTGCAGGTG CTGGCTGGAAAATACTTGCCGGAAGGGAATATTTTGACAGCAGATCACCAGCGGGGAGAGTCGTATCTTTGGCGTGGAAT TTTGAAGGCGAAGGCGGCGGTTGCACACGGTTTTGGGGCTCGATTGGGTGACGGAAATTCTTCATTATGGTATAGTAATT GGCTGGGGACAGGATTGTTAGCGACACAGATTCCATTTCGTTCGTATCTCCGATACAGATTTGCGGGTTGCAGATTTGTG GCAAGGTGGTCAGTGGTGTTTTGA
Protein sequence (LotjaGi3g1v0164000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQALWLPEAVCDHVDRMVRNCIWAKGNNSRSWNLVAWRDITQPKDKGGLGLRSARENNEAMLRKMVHSLLAEKDKMWVQV LAGKYLPEGNILTADHQRGESYLWRGILKAKAAVAHGFGARLGDGNSSLWYSNWLGTGLLATQIPFRSYLRYRFAGCRFV ARWSVVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 135 | 131 | 7.0E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0164000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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