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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0168200 |
| Transcript ID | LotjaGi3g1v0168200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication protein A 70 kDa DNA-binding subunit; TAIR: AT2G28105.1 replication factor-A carboxy-terminal domain protein; Swiss-Prot: sp|Q10Q08|RFA1B_ORYSJ Replication protein A 70 kDa DNA-binding subunit B; TrEMBL-Plants: tr|V7BW32|V7BW32_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0168200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22946418..22951594) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTCTCATCCTCAACATAGAGAAGGATTGTTGGTGAGGTGAGTAGCAATGGAAGGAGGAGCAAGAAGAGAAGGGGCTA TACCATGCACCATCCTAAGCATAGACCACAGAGACATGTACTACAGAGTCTGCTCCATTTGTGAAAAGACTCTTCCCTCT CCCAATCTCCTCTGCAACTTCTGCAGCAAAAACAACAACAATGCCTCCTCCAAACGACTCTTCCGAATCCTTGTCTGTGT TTTCCCACCTTTCTTGTCCAAATCAACAATCAAGAACAATCAATAACGTTGTTTGTTTGATTTTGCAGATGTCAATTGCA ACAGACACCAAGGTAGTTACAGTGATTTGCTTCGATAGGGTTGCTAGGGTTCTCTTTGGTTGCTCTGCCGATGAGTTCTT CAACTTCGCCAAGCTTCACCCTTTTTCTGGTAATTTCAATTTTCTTCCTTTTTATTTTGATTTGTTCATCTGGGTCATGC TCAATTGTTGTGAAATGTAATTGGGAATTTTTCACAAACAGGGGTCACTGTGAATGAGATTCTGGAGGGAGAGATGTTCA CTGTGACGTTTTCCAAATCAGTGAGTGGCAATGCACAGCATACAAGGCTTGCTTCTGCTGTTCCCCTCAGCTCTGTGTTT CGTCCAGTAATTCAGGTTTTGAGGGAATGCTATGGATCACAACATGGTTCCTAATCAGTAATCATCAACACCTACTTTGT TTTGTTTATGTTTTTTATAGTTGTATGTTTTGATAGTTTGAAATTTGCTTGCTTGGTGTAAACTGGAAAAGTGAGAGAAT TTGGAAAAAAAATCACTTTCTATTGATACAACACAACAGAAAAAAATCACTTGCTGTTGGTTATTTTTTCACAATGTGTT TGCTTTATTTTACACCTTTCCTCTTTGCACTTATACAAACCATGCATTCCCTTGGTGCCTTATTTCATGAGTTTGGGAAC AAAATATACGGTTCATTTCTCTTAGTAGTAGGGAGGATTTAACTTGATTTAATTTGTTTTCAATTTAATGTCCCTACTTT GAAATTTCCTCTTCTCACTGATTTTTTAGATCAATTTTTACTGTTGATATATAACTAACATAACAAAGAAGCAACAAGCC CTTGTCATTTACTGGGAGTCATGGCATAATGTTCAATATTTTTATTCAAGAATTGAAATTTGCTTGAATAAAATTAAAAA AAATTACAAGGTTGTGTAAGATTTAATAACAAGGATACATGATTTGCTCCAAATCCTCCAGTGCACAGTTTTATGTTATC ACTATCTATTCAACTGGAGGATGATATTGGCTTTGCTCAGTACATCATTTAGGAGAGACATTCTCTCCACCCTTTTTAAT TGTCAGTTTCCCTTGCATCCAGCTTTTTAGCATCTCAAGTGCAGCTTTTGGTTGATCCATAGGGACCATGTGACCAGCCT CCTTCACCTGTTTCAAGAAAATAAAAAGTTAGTCCAAAAATGAATTAACACTGTCATGCTGAAGAAAATGCACCCATGAA CACTAACCTTGAGGAAAGCAAGAGGTCCATGGGTTTTCAGCTCTCCTGCTTTTTCACCATCAACCAAAAATGGGACTATT GGAGATGCCCCAAAATCTTTCTGACCTGACCACTCCATGGCATCAACCCACCTTGAATTCCCTGCCCAATGAGAGGCACA TTACTAGTGTTTTTGATTTAGATTTTAGAAGTCAATTGAGGTTCCAAAATCAATTCTAGCAAGAAGCTAAAAGTGTAGCT TTTGAATATAAGTGCATTGGCTTTTGTGTCATACCATTCCAACAAATACACTTGTGTATGTTTGAAAACTCATTCAAAAA CCACGGTGAAGCGACAGAAGCAACTTAGCTTTCACTTCTGTCCACCATGATTTCGGTTTCGTGGTTTTCAAACAAGTTTC CAAACATTCAAGCATATTTGGACCAGCTTCTTTTTCCAAATCAGTTCTGAAATCTAGAAGCTACTCAAAGAATTGGTTAT GACTTAAGAATGACTTGTCGAAGGATTTATAAACATGCGCTAAGAATGCTAATTGACCAATTTTACTTTTTTTGAACACA AGCAAATTTTTATTTGAACTATTCAAGCTTACCTAGCCAATTGCATATGAGATCTTCTTCTCCAGCATACACAAGCACCT TGATTCCATCCTCAAGAAGAGTAGGAATACCTACTTCCAGATTTCTCATCCAGTCCTGCATCATGGCGGAATACACTGTG CTGCTGCATGAAACAAAGTCCATCTCCCCAACACCTAAAGCATTCCTCACTTCCTTCTTGTTTAAGAATGTCTCCATGTT GGAAAAGTCATAACACAAACTTCCCTCACATTTCTTTCTAATGTCGTAGTACTGCAATTCGGATGACAATGTGCAAGTGA AATCGAACTACATTATTTTCGCATATAATCTTTGACATAATACTGTTCTTATTTTCATATCTTACATTAATGTTTCCAGC AATGGACAAGATCGAGTTGAAAATGCGATTGCAAGAATATAATGCAGATACGCATGTGTCTCCACCATTAGTGCCTGACA AATCAAATACAAATTAAGAATGTGATTGAACAAAAATAACATGTGGCTTGAGTATCAAGTTGGTAAAGTTTTCTCCCATG TGTTTTTCTTTTATAAGGATGAGTGAAAAAGGGAAAAGAAGTCAGGATGTTATACCACAAGTTTTTATGGCCTGCTCACA TGGTGGGATCAACTTGTTGATTCTGTCATAATCAGTCTTGTTAATTAGTCCCATGTCTAATGCATAGTCTGTATATGCCT TGTACTGAATTTCAGGATTGGTTAACCCATTACCAATAGCAAAACCCTGTTCATAATCAATACAATGAAGGCCAATTAAT TCACCTTTCTTAGTTATAATATGTATTATGTGATAGTGTAAGAGTTAAGACCTTCAGATTTATGTGGGTTCCTTCTTTTG CTTTGTTTCCTTGGTGAACTCTGGATGCAAGAGCTGGAATGTAGTGTCCAGCGTATGACTCTCCAGTAATAAAAAAGTCA TTCTTGGTGAACTGAGAGTGCTCTTTGAAAAATGCCTGTCATTGATGTAAAATTTAGCAGATCTTATGAGTGCACGACAG TTTAACATACAATTTGTAATTTAGATAGTATGCAGACCATCTTGCATTTTTCAATTTGTAATTCAATACATGAATTATTT GTTTTAATTTTACTATGAAATTATATTCTTTGACCACTTTTCATAACATATTACCTGCAAAAAGTCATACAAATCATTGC TAACACCTTCTTCATCATGGCGAATGTCACTCTCATCAGTAGTGTAGCTGAAACCTGTCCCAGTGGGCTGGTCTACAAAC AGAATATTTGAAGCCTGCAAAACGAGTATTGATTCCCATAAGATAACAAATTTAGTGCAGCAACTTGATTATGTGAGCCA GTCATAGTCTATAGTATGAGTGAGGGCAGTCATATACATAATATCACTTCATTAAATGAGCAGGGCAAAATAGAGAAAAT TTGCTAGCATTTTTTCTAGGATGGTTATATGCTTAAAACATTAATGCAAAAAAGATATTGAAAATTGCTTGCTAGCATTA CCTTGTCCCATCCATATTCATTCCATACGAGAGACAAGTTCTTGGCAAAATGAAAAGGACCATTTTCATAAAACATAGCT AGCTCACTGCTGCATCCTGGTCCTCCAGTCAACCAGATGACAACAGGGTCATCCTTACTGTTCCTAGATTCAAAGAAAAA GTAGAACAACCTGCAAATGATGGAGAGAAAGATTATTCAATACAAGAATGACCACATAATAGTGCTCAATCATTTACAAA AAGATAAAGTTCAAATTGTTAATATAAGCAACCTAACCCATGGAATAGGAAATCTAGGCTCTTTGAGATTCAAGAAGAAT GATATAACCATGTGAACTTATATCATCAGCTATGATAGCATGCATGTGTGTTGAGTCAATCAAACATGTCATAGAGTGTT TGGATTTCTATTCAGAGTTTAAAAGTACTTTGAATAGAAATCCAACTCTCACAAATGGTTTGAAAAAAAATGGTTTTGTT TTATGTCATTGGAAAGCAATCATAAATTTAGTTGTAGGATTTTTTTATTACTCTTTAAGATTACTCTGCAGTCACTTGAA ATTCAAATCTAGTTCATTTTAAATTGAGTAAATCAAGATTCCAATAGCAGCTTTTTTTGAAAACAGAAAAAAGGGGTGGA AACAATTATTTGACTTTAATCATATAAAGAATCTTTACTTGCACATTTATTCATATGACATGTCTTCAATTATAGGTGGC ATGATATCTGACTTATGTTTCATCTACTTACCCATGCTTTTAACCAAATTATCTCTGTTCTTGGCACTTTACTTTTCCCA CCTAACTTAGTTGAGCAATATCAAACTAAACAAACTCTTTCTAATTCAGACATGATGCAATCATTCTGGAAAAAAACTAA GAAAACCCAATTCTCAAACTAAAAGAAGCATGCCAAAGTTTACATCCTATACCTTGCAGCTTTGGAACGAGGAAGGCTAT AGTATCCTGCACGATGGCCAAGGTCTTCAACAGAAGGTTCAGAAGCAGCAAGACTAGGAAAAGTTAACTTTTTCTCCACA AGGTTTCCAGAGACAACATGAGGTTCATTCTCTAGTGTGTTAACAGAATCTTTTGGGAACAGGTTGAGCGCTCTTATGAG CTTCTCTGCATCAAGTTTTGGAGAAAAGGGAAGATCATCATCATTGGTGGTGGGAAAAGATGCAGAACAGAGAGAAGGTG ATGATGAAATGAAGCAGAGGAAGATCAACATGAAGAGAGACAGAGACATGGTGTTGAGGAACCTTGACGGTGATGATGCC ATGTGTTTTGTGTTCAAAATGCGTGGCAATGGCTGTGAATTTATATTGCTCGCTTGCTACCTGTGCAAACTGCTATGGTC GCTAAAGTGTAATGGAAAAAGGTTGAGTGTTACAGGGTTAACGGTTCCCATTGCTTTTTTGAAAAAATTACATCATTATT GAATTGATCTAAAATTGTTTCTCATAAAACAAATTTGTAACATTTATATGATTAATATACATTACTGTATTTATTACAAA TCTCTTTGTGGTCTTTTTAATTTCAATACTCCATCCATCCCGTTTATAAGTAACTTT
CDS sequence (LotjaGi3g1v0168200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGGAGCAAGAAGAGAAGGGGCTATACCATGCACCATCCTAAGCATAGACCACAGAGACATGTACTACAGAGT CTGCTCCATTTGTGAAAAGACTCTTCCCTCTCCCAATCTCCTCTGCAACTTCTGCAGCAAAAACAACAACAATGCCTCCT CCAAACGACTCTTCCGAATCCTTATGTCAATTGCAACAGACACCAAGGTAGTTACAGTGATTTGCTTCGATAGGGTTGCT AGGGTTCTCTTTGGTTGCTCTGCCGATGAGTTCTTCAACTTCGCCAAGCTTCACCCTTTTTCTGGGGTCACTGTGAATGA GATTCTGGAGGGAGAGATGTTCACTGTGACGTTTTCCAAATCAGTGAGTGGCAATGCACAGCATACAAGGCTTGCTTCTG CTGTTCCCCTCAGCTCTGTGTTTCGTCCAGTAATTCAGGTTTTGAGGGAATGCTATGGATCACAACATGGTTCCTAA
Protein sequence (LotjaGi3g1v0168200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGARREGAIPCTILSIDHRDMYYRVCSICEKTLPSPNLLCNFCSKNNNNASSKRLFRILMSIATDTKVVTVICFDRVA RVLFGCSADEFFNFAKLHPFSGVTVNEILEGEMFTVTFSKSVSGNAQHTRLASAVPLSSVFRPVIQVLRECYGSQHGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 130 | 122 | 7.0E-9 | – | |
| SUPERFAMILY | 11 | 97 | 87 | 5.48E-14 | ||
| Pfam | 12 | 96 | 85 | 7.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0168200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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