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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0172100 |
| Transcript ID | LotjaGi3g1v0172100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RETICULATA-RELATED 1, chloroplastic; TAIR: AT5G22790.1 reticulata-related 1; Swiss-Prot: sp|Q9FGP9|RER1_ARATH Protein RETICULATA-RELATED 1, chloroplastic; TrEMBL-Plants: tr|V7BYG5|V7BYG5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0172100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23680947..23685457) extracted from Lotus japonicus Gifu genome v1.2.
AGGGACTAAAAGTTTATTTAACCCTTTCAATTTTTTTTTTTTCAAATTTTTCATTCTTCTATGATTCCTTCTGATTCCAA CATTTTTCGTTCGTTTTGCAACTCCTTCTCCTTCTCTGGTGGCGGCACTGCAACTGCAAACAACCACCGCCATCACCACC ACCACCACCACCATGCCATTCTCTTCACTCACCTTCACCCTCTCCAACTCCTCCACCACACCCACATGGACCACCGCGAA TCAACCCACTCCACCATTCCACACTCTTCAACCCACCCCACCACAAACCTTCTCCATCTCCCTCCACAAACCGCACCTTT TCAGGATCCACTGCACCAAACCAGATCCACTCGCCCCGTTACCTAAACACGATCCTACGTTTCAGCCCGCAATTGGCGGA AACGACGACAACAACAACGGCGGCGATGGCAGCGGAGGTGGCGGCGGTGATGAAGGGTCAGGAGGCGGCGACGACGGTGA TGAGGAATTCGGACCGTTGTTGAACTTTGAAGCGGTTATGAAGGAAACTGAAGCTCGGGGTGTGAAGTTGCCTTCTGATA TGGCAGAAGCTGCGAAGAGCACAGGCATTAGGGAAATGTTTCTTCAACGTTACTTGGAATTGCAGGTGGGTTTTCTCAAA GTTGAGATTCTTCTTTTTTTGGTTTCATGTTTGAATTTTTGTTCACTGATTGTGTGTGCTTAACCATTTCAGGGTTCTTC TTGGCCACTGTCTTTTCTGATTGAGCATTGTTCTATGCTGAGAAATCGAATGCTAGCTGACCCTTCTTTTCTTTTTAAAG TTGGAACCGAGGTTTGTTTGCGGTTATGGTTATGAATATGAACTTGATCATGTGCTGTTTAGCAATTTTGTGTGTGTTGA GGATTGGATGTGCTGAGCAAATTAGTTGTTTGTCACTGATTTGGCTTGTGCAGATTGTTATAGACTCTTGTTGTGCAACT TTTGCGGAGGTTCAGAAAAGAGGCAAGGATTTCTGGGCTGAGTTTGAGTTGTATGCTGCTGATCTTCTGGTTGGGGTGGC TGTTGATATTGCTTTGGTTGGTCTGTTGGCACCGTATGCTCGAATCGGCAAGCCTTCTGTGTCAAAAGGTTTACTTGGAC GATTTCAACATGCTTGTGCAGCCCTTCCTAGCAGGTCAGTGTCTGCCTGCAAATATGTAGAACGATTGAGAATTATATTA TTTTCTCTATCATTTTTACTGCAATGTTTTTGTTCTCCTTCATTTGGACTAATAAAACAAGTAAAACTTGATCTGATACA CACACTATCATTTTTTCTTCAAACTAAAAAACCTATGAAGATGGTGTAAGTGTAACAGTTTTGGCATATAAATGACTTTA CACCTCAAGTTACTATTGAGCTCTGCTGATCAGCCTGAATTGATGAATTATTTTCCATTGTACTTTTCAAGCCTCAACCA CCTGGAGCCATTAGAACTTTTTTCAATTGACTATTTTAGAGCAGGCCGGGTCAAGCTTTTATAAGAGCAAACTGGTTGGC GGATTGACATATAATTGTTGCCACAACCAGATGCTAAATTTTGGAAAGGATGGAATATGCTTTGAATTCAATAGTGCTAT CCCGATAGATCAAATGTTTCAGACTTTCAGCAATATCCAGCACTCATTATTGGTGTATTTGCTACATCTAGGCTGAATTT TGTTTTCTATTCAATGTCACCATTTTCATTTATCTTTGGTGTATGCAAACCATTTATTCTGTGTAATTGTATGTAGAAGC AGACATTAATTAACAATTCAAGTCTTTAATTGAGATCCCTTGTATTCTTGTTAGTGAAGCTCCTTGTATTCCTGTAATTC TGAAGAATGGTACTACAAGGAAACCCTGGGAATAAGTGAATAACTTTCTCCCGTCCTTAATTTGTGCCTAGCAAATTTTT TGTTGACTTAAAATTGATAATAAACTTCTCCATGCTTTTCAGAGATGAAGATGAATGTGTAATTATTGTGTGATACTAAA TTATAACTTGAATGCAGTGTTTTTGAAGCTCAAAGACCAGGATGTAAATTCTCTGTGAAGCAGCGTATTGCCACATACTT CTACAAGGTGCCGTGTGTTCTGAAACTTCATAATTATTTAATTGTATGACAGAAAAAAGTCATAAAAGTTATCTATACAA CAATAGCATCAAATTTGATTGCATGTGATAGAGACATAGAGTGCTTCCATTTTTTTTGGTGTTAGTTATGTTGTCTTTGT TTAATATTTTACTTTAATTTTGTTTCTAGTCAAAATTTATTCCTGACCTTCTGTGTTCAGGGTGCCTTGTATGGATCAGT TGGATTTGGATGTGGTATAATTGGTCAAGGAATTGCTAATGCAATCATGAATGCCAAAAGGTATGCCTACTCGTGTGTCC GGATAGAGGGCTTCTTTTGTTTAATTTTAGTATAGATATGTCTTATCGACTAATTCCTTGGTTAGCTGCATTATTTTGGT CCTGTTTGGATACGGACCAAATAGCACTTACTGAAGCTTATTCAGCGCATTTTTTTAGTAGAGAAGCTCCAGTAAGCCGT ATCCAAACGGGCTCTTTATCATAATTGCTTGATTTTTTTGTTATAAGATTATGAAAAGAAATATTCAAATGCTTTTTTTA TTATGGGGACCAATTTTTTTTCTTTTGTAAATTACTAAAGGAATATTATATTTAAAACAGGAGCATTAGCAAATCTGAAG AGGACATACCTATACCTCCTCTTCTGCAAAGTGCTGCTCTTTGGGGTAAGTTTCAATCTGTTATTCAAAATTTCTGTCTC CTGTTTTTTTATGCTTTATTCTTCAACATTTGATAAAACATATCTGAATAGTATTCTGTTTTGTTCAGTTTCTTGAGTTA GCTCTGTTTTATTGAGGGACAGGGAATTTATAAAGCACGAATCTTAATTTCAAAATGGCAACAAAAAAACAGTTTCATAT TAATGTTGTTTTTAGCACCTTTTTATTGAAAAAATGTTGTTTCTATAATTTGCAAGGAAGTTTTTCTTTTTCTTTTTCCG ACCTGCTCACAAGAAGCACATAAAGTAGAGCACCATCTTCTGTTGTTATTTACTTGTTGAATAGAAGATATAAACCTTAT TGCCTTTGAGCTTAGTTGTTGCATTATTACCTTTGAGATGAAAGAGAGAAAAAGAAGAAAAGAGGGGCTAGATAATTTGT GTTAGTTTCACATACATGACATAGAGATTTGGCTCCTTTAAAAGTGAGAGGGTCACTTATTGTAAAGTAAGTAGTGATAA ACGTTGATTAAGAAATTAATGGTTGAGATTGTGATTATACACTTACAGATGTATCAAAAACTATGAAGTTCTGTAAATTT CAACTATTAATTTATGAATTAACGGTTGTGATGACTTACTCTGCTATTTAAAGCCACTCATTTACCTTAGAGGAGCTAAG TCTAGTATGCTGGGGTCATCTTAACTGATCCAATAGTAGCTGAGGAATGGAAATAGTGTTAGGGTTATCGCCATGTTATA ATTTGCTTACTTGGTTTTCACCCTATCAGGTTTCTTTCTTGCTGTCTCATCCAACACGCGTTATCAGATTATTAATGGAC TGGAAAGCCTTGTCGAAGCATCTCCGGTTGCGAAGAAGGTTCCACTTGTTGCAATGGCTTTCACTGTCGGCGTGCGATTC GGTAACAACATCTATGGCGGTATGCAGTTCGTAGACTGGGCCAAATGGAGTGGCGTACAATAAGTGCCCTTGTTTTCACT TCCCAGTCATTGTTTGGAGTTTTCATCCAAATTTGGGGCTAGCAAAGGTTCTTATTCAAATTAAGAAGGAAAGCTCCCAT CATTTTTTTTCATCTGTTGAGCATCCGTTGTGTGATGAAAAGAGGATCATAGCCATCCACTCATGCCCGCTTTTTCTTCT CTACAACTTCATTTCTTCTTTTCGATTTTCGACATCATTATTATGTAACTTAGTTGTTTCAGATTTGATCTAGAGGTATT AGGCTTCATTTAACTGGGCATGGTCTTAAGTTATCAAATTCATCTATTTGGGTACTGTTAGCATGGGAAAAGATAACTTC AAAACCCAAAAAAAGCATGGGGAAAGATATTTTGCAATCTTTTTTGGAGTAAAATTAGCCATTATTCTCATCAATGGACA AGCCAGTGGGTTGTTGGTAGCATTAATGCTGCTTATTGTCAACATAAAACATTCGATTGAGGGCTAGATCCTCTTCGTTG GCATGTTCGCCAGAAAGATATCCTAGTCGTCCAAACTATTTTTAATCTTCCACATATTTTGGACAATTGGGGCTTCTTCC CGGTAATCATGTCACTAGACATTTAATATTTAAGATTTTATGGTTGATAATTCTTGTTTTTTTTATAAACCTAATAATTG TATTCAACCTTAGCACAAGGGGTGCTAAACCCAAATACAAAAAAAGAGTTTATGTGAGTAGCTAGATAAGTCACACCAAA GGAAAAACAGAAAGAAAAAAAAACTGAACAA
CDS sequence (LotjaGi3g1v0172100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATTCTCTTCACTCACCTTCACCCTCTCCAACTCCTCCACCACACCCACATGGACCACCGCGAATCAACCCACTCC ACCATTCCACACTCTTCAACCCACCCCACCACAAACCTTCTCCATCTCCCTCCACAAACCGCACCTTTTCAGGATCCACT GCACCAAACCAGATCCACTCGCCCCGTTACCTAAACACGATCCTACGTTTCAGCCCGCAATTGGCGGAAACGACGACAAC AACAACGGCGGCGATGGCAGCGGAGGTGGCGGCGGTGATGAAGGGTCAGGAGGCGGCGACGACGGTGATGAGGAATTCGG ACCGTTGTTGAACTTTGAAGCGGTTATGAAGGAAACTGAAGCTCGGGGTGTGAAGTTGCCTTCTGATATGGCAGAAGCTG CGAAGAGCACAGGCATTAGGGAAATGTTTCTTCAACGTTACTTGGAATTGCAGGGTTCTTCTTGGCCACTGTCTTTTCTG ATTGAGCATTGTTCTATGCTGAGAAATCGAATGCTAGCTGACCCTTCTTTTCTTTTTAAAGTTGGAACCGAGATTGTTAT AGACTCTTGTTGTGCAACTTTTGCGGAGGTTCAGAAAAGAGGCAAGGATTTCTGGGCTGAGTTTGAGTTGTATGCTGCTG ATCTTCTGGTTGGGGTGGCTGTTGATATTGCTTTGGTTGGTCTGTTGGCACCGTATGCTCGAATCGGCAAGCCTTCTGTG TCAAAAGGTTTACTTGGACGATTTCAACATGCTTGTGCAGCCCTTCCTAGCAGTGTTTTTGAAGCTCAAAGACCAGGATG TAAATTCTCTGTGAAGCAGCGTATTGCCACATACTTCTACAAGGGTGCCTTGTATGGATCAGTTGGATTTGGATGTGGTA TAATTGGTCAAGGAATTGCTAATGCAATCATGAATGCCAAAAGGAGCATTAGCAAATCTGAAGAGGACATACCTATACCT CCTCTTCTGCAAAGTGCTGCTCTTTGGGGTTTCTTTCTTGCTGTCTCATCCAACACGCGTTATCAGATTATTAATGGACT GGAAAGCCTTGTCGAAGCATCTCCGGTTGCGAAGAAGGTTCCACTTGTTGCAATGGCTTTCACTGTCGGCGTGCGATTCG GTAACAACATCTATGGCGGTATGCAGTTCGTAGACTGGGCCAAATGGAGTGGCGTACAATAA
Protein sequence (LotjaGi3g1v0172100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFSSLTFTLSNSSTTPTWTTANQPTPPFHTLQPTPPQTFSISLHKPHLFRIHCTKPDPLAPLPKHDPTFQPAIGGNDDN NNGGDGSGGGGGDEGSGGGDDGDEEFGPLLNFEAVMKETEARGVKLPSDMAEAAKSTGIREMFLQRYLELQGSSWPLSFL IEHCSMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVAVDIALVGLLAPYARIGKPSV SKGLLGRFQHACAALPSSVFEAQRPGCKFSVKQRIATYFYKGALYGSVGFGCGIIGQGIANAIMNAKRSISKSEEDIPIP PLLQSAALWGFFLAVSSNTRYQIINGLESLVEASPVAKKVPLVAMAFTVGVRFGNNIYGGMQFVDWAKWSGVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 393 | 393 | 9.7E-221 | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 393 | 393 | 9.7E-221 | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 55 | 107 | 53 | - | – | |
| Pfam | 169 | 347 | 179 | 1.7E-63 | ||
| TMHMM | 210 | 232 | 23 | - | – | |
| TMHMM | 278 | 300 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0172100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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