Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0174900.2

Overview

Field Value
Gene ID LotjaGi3g1v0174900
Transcript ID LotjaGi3g1v0174900.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Aldo/keto reductase family oxidoreductase; TAIR: AT2G27680.1 NAD(P)-linked oxidoreductase superfamily protein; Swiss-Prot: sp|Q27YU7|RSP5_CHLRE Flagellar radial spoke protein 5; TrEMBL-Plants: tr|I1M4E6|I1M4E6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0174900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:24272826..24277594) extracted from Lotus japonicus Gifu genome v1.2.

GTGAAATCAGGTTCACGTTGCTTCGACAAAAAATGCACATAATTCATGCATGAGGTTACACACAAGTCAAATAGTATTAC TTTCCCTAGTTGGTAAACCTACGTCCTACGGGCTCAATTTGGGCTTTTGGTAAATACATTTGGGCTCTTGAGTTTTGAAC CAGTGGCATTATCGTCATTTCACCTTCCTTATCTTCTTCTTCTTCTTCTCTCACACTGAGTCACAGAGTCCACGAGAAAT GGCAGCAGTAGTGAGTCACAACCATCTATTCACGCGGTTCAACTCATCCATATCCACCAGGAGAAGAGTTACCGGCACGA CCTCGATTCGGTGCTCCGATGTGAAGACAAGCACTGAGAATCGGCAGGTGACGGTGAGTAACGGCAACGATTCACTTTCT ATCTGCCGTGTCCTGAACGGAATGTGGCAAGCTAGCGGCGGATGGGGCCGAATCGACCGAGACGACGCCGTTGAGGCCAT GCTCCGGTACGCCGACTCCGGCCTAACCACCTTCGACATGGCCGATCACTGTACGTAATCCCCTCATCTTCTCTCCCTCT CCCTCTCCCTCTCGCGCTTCCTTCTTTGATGACGTGGACTTTTCGGATTCACGTTTTTTTTTTTCCTTCATTTTCACCGC TTGTGATTGAGTATTTGATTAACTAATGATATAAAAATAAAAATCATTTTATCAAAAATAAAAACACATCATATAACATA TGCATAGTTTAAAAATGCTATTCTTTTTTATTGAATATTTGTTCTTTAAAATTTAACTACTTAATAACATAAAACATTGG CCTAAATTTTAATATGTTTGGACTTTGGATAGTAGTGTTTGATAAGATATTGACTAGTTTTAGGTTGGGCCGGGGGTTGT CCAGGCCTAACACAACCGTCATCCTTTATCGGGTTTAGACCGGCTATACTTATAGGCGGAGTTAGAGTATTCACAGTGGA TAGTCGTGAGACTAATTATCGCTTTACACTCGGTGTACTAAGCAATGAGTCTATATAATAATAATAATAATAATAATAAT AATAATAATAATAATAATAATAATAATAATAAGGATCCCTAATAATAATAATAATAAGATATTTAGAAAAAGAAAGAAAA AATGCGACCTCATAAAATAAAAATGAAAAATTATATGGTGGAGAGCAACGGTATGCCAATATAGGATAGACCATTGATGC TGCTACTGCTAGAGAGCTATTATAGACACTTGAGGGGTTTAGAAATGTCGGAGTTACTGCGGCATTCATTGAGCAAATTC ACTTTCACTCCAAACGGAACACCAACTAGGAGAGGAACTGCAACAAGAAGATACAAGCATCTGAGACCATGTCAGTGTGT GGCGACGCAGGATAACCGCCTCATTGTGGTTAAGAATGGCAATGATTCGTTGGATATATGTCGGGTTGTGAATGGGATGT GGCAGACGAGTGGTGGATGGGGCAGAATTGATAGGAATGCTGCTTCTGATGCTATGCTTAAATATGCTGATGCTGGACTC ACCACTTTTGATATGGCTGATATATGTATGCAACTTCCAACATGTTTGGTTTCATGTTAAAAACTTTCAGAATCACTTAT AACATGTTTGAATTAGTTTGTTTTTATTCAGAATCAATTCTGCCACCAGAAGCTACTCCGAGAAGCTTCTTCTCATAAAT GATAGAAGTACTTGTCAAAATATTTCCATACATGCACTTATCCCTTCACAAAAGCTACCAGGAGTAGCTGCCTCCGGTTG CTTTCTGTTTGAAACCATGAACCTGCTTCCCCAGAAAGCAAAATTATTGCCTTCACTTGTGTACTAATAATGTTATCCGC TAGAGGAATAGAGATTGTTCAAATTTGAGTGTGGGATATGATATTTAGATGTTATAGATGTGGATTCTTCTTTTTTAAGT TTTGCATGAAGGGTCATAACTTGTGAAAATTGTGTTCTCATTGTTGTGTTCTTTGGGTTTTGCAGATGGCCCTGCTGAAG ATCTGTATGGGATTTTCATCAATCGAGTTCGTCGTGAGCGTCCACCAGAGTTATTGGAACAGGTCAGAGGGTGAGTTGAT TATGTGACTGGATATTTTTTTTTCTTAACTCTTTTTTTTGCTTGATGAAAATACAGCAACTTTAGACTTGTATTGGCTAT TCAATATCCTATTAGACACTTTTAAATTGTTAGGAAAGAGATAGAGCAAACTATTGTCTTAGCTGTTGTTTCAATTGATT GATGCAGTCTCACTAAGTGGGTGCCACCCCCAGTTAAGATGACAAGTAGCTATGTAAGAGACAGCATTAATGTTTCAAGG AAGAGAATGGATGTGGATTCCTTGGACATGCTTCAGTTCCATTGGTATTTAATCTCTCTCTCGCTTTCGCTCTCTTGTCA TTTGATGTTCTGAAATGGTCAAGAATTACAGTTCTTGCCTAACATTTTAAGTTTTCTGGGAGAATTAAACCATCAACATT ATCCATGATGTGAAACCCATTCATTTTGCTTGCTAGTGCATTACTGAAATAAATGAAGAATTGATTTTCATCATCTAGTT GAACTACTATTGAAGATAACTCTGATTTCACTGAAGTTTAAAATTCTTCTGATAAGTTTCCTCTATCTATAATGGATTTA GGTGGGATTATTCAAATACAGGTTACATTGATGCACTTAAACACCTTACAGACTTAAAAAACGAAGGTTAGTTTTGTTCC TGAGTAACAGTTGATAATCACATGAAAATTCCCATTTCTTGATTTGAAGATGATATCAACCTACTTCAGTTGGCTCTGTA CAGGTAAAATCAAGACTGTGGCTCTAACAAACTTTGATACAGAGAGACTACAAATCATTCTTGAAAATGAGATTCCTGTT GTAAGCAATCAGGTAAATCCAAGTGCTTTAATTTCTCTCTCAACTCTTATTAATTAATGATGGTCCTTGATTCGTATTAG TACCTTCACTTTCAGGTACAACATTCAATTGTTGACATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCTTACAGG AGTCAAACTTATAACGTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC ACACACCCCAACACACAGCAAGAAAACAAGTTATTTAAACCGCAGAAAATAGTTCTCGCGAATGAGATGAAAGAAAGTGA AGTAAAAGAAAAATTAAAATTGTTCTCTTAAGATATCAGTTTGTGATGCAGGTATGGGACAGTAATGGGTGGTCTATTGT CTGAAAAGTTCCTTGACACCAACATAAATATTCCTTTTGCTGGTCCCGCAATAAACACTCCTTCCCTCCAGAAGTACAAA AGGGTATGATATCATGAACTGTTGACCACCATTCTAGTGATAGTTTGAGAAACTTTCATAGAAAGTTTGTATCCCCTCTG GTTTCATTATATTGGAAAACTGGTTTAGGTAAGACAAAAGAGACTGATGGTGGATGCTTAGGAAGGGTGGAGTTTGTTAT ATTCATTTGACATAGGCTTTGTTATGACATAAGTTGTTTTGAACTTATTTCCATAAACTGCTCAGATTAACTTCTAAATA AGCGTTTATACCTACTACCTGGTTATAATCTGTTTTGAGTTCATTTCATTAAGGTTATCAAGTTAGTTTATGAATAAGGG CTCATGCGAGTTAATTGTTATAAGCGCCTAAATAAGTTGTTCACCCAAACTCATCCATAGTTACATTCATGTTTTTTGCT ATATTTTGGATGGTGTGGCAGATGGTAGATGCTTGGGGAGGATGGGGTTTGTTCCAGGGACTACTTCGGACTCTTAAACA AGTAGCTACTAAACATGGTGTTTCGATCTCAACTGTTGCTGTGAAGTATGTGCTAGATCAGGTGAAGTTGATTTCTACTC ACTTACAAAAATTTGCTATTCTAATGGATTAAAATCTCATATTACATTGGACAAGCCCTGGTGGATATTCCTTTTATTTT GGTTCTGGTCAAACTTGCAGTCTGCAGTAGCAGGATCTATGGTTGGTGTAAGACTGGGCTTGTCGGACCATATTCGAGAC ACGAATGCTATCTTTTCACTTGTTCTTGATGAAGAGGATGTGAACAGCATAAAAGAAGCTGCAGGGAAAGGAAAGGATCT GCTTAAAGTGATTGGTGACTGTGGAGATGAGTATAGGCGTGCATGAGTCATGCTATTGCTTGCGTATCAACATGGTGATT ACTTTAGTTTTTACAGGACAAGGGGATGAAAAAAGAGGAAATTGTTCACGCCCAATTTTGTTTCAGCAGAAGAACTTGTG ATACTTTCATATATTCATATATTACTCAATACTGTAAAAAAAAAACAAAAGCAAAGAGGAAATAATTTATTTTGTATTAT GTATCTGGTTAATGTCATATTACGCCAACTCGCAGTAATCGTTCCCAGACAAGCCAGAGAAACCAAATGTATAGGGACTA ATGAAGTCCAATGCTTACCAAACCAAGAAAAACCGACTGAAGAGGTTCAAGAAATGTGGAAGCATATATAGGAGTTATGA CTATGAATTTAGGCTATGTTTGGTTTTGTGTTGGCATCCTTCAAAGTACTTTCAAATTGCATAGAACTCTGCACCCACTT GTTTGGCTATTTTTTCTCTCAGTTAACTCAACTTAGTTTGGGCTCCAAACGTGGGTTTGATGGAAGTAGAGAACTGGTAA CTTCTCTGTTGATTGAAAGTTGGTTGAGGTTCTTTCATAGTAATTTTAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0174900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGCAGTAGTGAGTCACAACCATCTATTCACGCGGTTCAACTCATCCATATCCACCAGGAGAAGAGTTACCGGCAC GACCTCGATTCGGTGCTCCGATGTGAAGACAAGCACTGAGAATCGGCAGGTGACGGTGAGTAACGGCAACGATTCACTTT CTATCTGCCGTGTCCTGAACGGAATGTGGCAAGCTAGCGGCGGATGGGGCCGAATCGACCGAGACGACGCCGTTGAGGCC ATGCTCCGGTACGCCGACTCCGGCCTAACCACCTTCGACATGGCCGATCACTATGGCCCTGCTGAAGATCTGTATGGGAT TTTCATCAATCGAGTTCGTCGTGAGCGTCCACCAGAGTTATTGGAACAGGTCAGAGGTCTCACTAAGTGGGTGCCACCCC CAGTTAAGATGACAAGTAGCTATGTAAGAGACAGCATTAATGTTTCAAGGAAGAGAATGGATGTGGATTCCTTGGACATG CTTCAGTTCCATTGGTGGGATTATTCAAATACAGGTTACATTGATGCACTTAAACACCTTACAGACTTAAAAAACGAAGG TAAAATCAAGACTGTGGCTCTAACAAACTTTGATACAGAGAGACTACAAATCATTCTTGAAAATGAGATTCCTGTTGTAA GCAATCAGGTACAACATTCAATTGTTGACATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCTTACAGGAGTCAAA CTTATAACGTATGGGACAGTAATGGGTGGTCTATTGTCTGAAAAGTTCCTTGACACCAACATAAATATTCCTTTTGCTGG TCCCGCAATAAACACTCCTTCCCTCCAGAAGTACAAAAGGATGGTAGATGCTTGGGGAGGATGGGGTTTGTTCCAGGGAC TACTTCGGACTCTTAAACAAGTAGCTACTAAACATGGTGTTTCGATCTCAACTGTTGCTGTGAAGTATGTGCTAGATCAG TCTGCAGTAGCAGGATCTATGGTTGGTGTAAGACTGGGCTTGTCGGACCATATTCGAGACACGAATGCTATCTTTTCACT TGTTCTTGATGAAGAGGATGTGAACAGCATAAAAGAAGCTGCAGGGAAAGGAAAGGATCTGCTTAAAGTGATTGGTGACT GTGGAGATGAGTATAGGCGTGCATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0174900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAVVSHNHLFTRFNSSISTRRRVTGTTSIRCSDVKTSTENRQVTVSNGNDSLSICRVLNGMWQASGGWGRIDRDDAVEA MLRYADSGLTTFDMADHYGPAEDLYGIFINRVRRERPPELLEQVRGLTKWVPPPVKMTSSYVRDSINVSRKRMDVDSLDM LQFHWWDYSNTGYIDALKHLTDLKNEGKIKTVALTNFDTERLQIILENEIPVVSNQVQHSIVDMRPQQRMAELCQLTGVK LITYGTVMGGLLSEKFLDTNINIPFAGPAINTPSLQKYKRMVDAWGGWGLFQGLLRTLKQVATKHGVSISTVAVKYVLDQ SAVAGSMVGVRLGLSDHIRDTNAIFSLVLDEEDVNSIKEAAGKGKDLLKVIGDCGDEYRRA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43147
19 381 363 7.6E-194 –
PANTHER
PTHR43147:SF1
19 381 363 7.6E-194 –
Gene3D
G3DSA:3.20.20.100
43 368 326 1.1E-56
IPR036812
SUPERFAMILY
SSF51430
48 360 313 1.26E-51
IPR036812
CDD
cd06660
49 360 312 7.16586E-58
IPR023210
Pfam
PF00248
59 360 302 5.5E-60
IPR023210

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0174900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…