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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0174900 |
| Transcript ID | LotjaGi3g1v0174900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aldo-keto reductase, putative; TAIR: AT2G27680.1 NAD(P)-linked oxidoreductase superfamily protein; Swiss-Prot: sp|Q27YU7|RSP5_CHLRE Flagellar radial spoke protein 5; TrEMBL-Plants: tr|K7LVP5|K7LVP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0174900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24273389..24275648) extracted from Lotus japonicus Gifu genome v1.2.
AAATTGTGTTCTCATTGTTGTGTTCTTTGGGTTTTGCAGATGGCCCTGCTGAAGATCTGTATGGGATTTTCATCAATCGA GTTCGTCGTGAGCGTCCACCAGAGTTATTGGAACAGGTCAGAGGGTGAGTTGATTATGTGACTGGATATTTTTTTTTCTT AACTCTTTTTTTTGCTTGATGAAAATACAGCAACTTTAGACTTGTATTGGCTATTCAATATCCTATTAGACACTTTTAAA TTGTTAGGAAAGAGATAGAGCAAACTATTGTCTTAGCTGTTGTTTCAATTGATTGATGCAGTCTCACTAAGTGGGTGCCA CCCCCAGTTAAGATGACAAGTAGCTATGTAAGAGACAGCATTAATGTTTCAAGGAAGAGAATGGATGTGGATTCCTTGGA CATGCTTCAGTTCCATTGGTATTTAATCTCTCTCTCGCTTTCGCTCTCTTGTCATTTGATGTTCTGAAATGGTCAAGAAT TACAGTTCTTGCCTAACATTTTAAGTTTTCTGGGAGAATTAAACCATCAACATTATCCATGATGTGAAACCCATTCATTT TGCTTGCTAGTGCATTACTGAAATAAATGAAGAATTGATTTTCATCATCTAGTTGAACTACTATTGAAGATAACTCTGAT TTCACTGAAGTTTAAAATTCTTCTGATAAGTTTCCTCTATCTATAATGGATTTAGGTGGGATTATTCAAATACAGGTTAC ATTGATGCACTTAAACACCTTACAGACTTAAAAAACGAAGGTTAGTTTTGTTCCTGAGTAACAGTTGATAATCACATGAA AATTCCCATTTCTTGATTTGAAGATGATATCAACCTACTTCAGTTGGCTCTGTACAGGTAAAATCAAGACTGTGGCTCTA ACAAACTTTGATACAGAGAGACTACAAATCATTCTTGAAAATGAGATTCCTGTTGTAAGCAATCAGGTAAATCCAAGTGC TTTAATTTCTCTCTCAACTCTTATTAATTAATGATGGTCCTTGATTCGTATTAGTACCTTCACTTTCAGGTACAACATTC AATTGTTGACATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCTTACAGGAGTCAAACTTATAACGTGCCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACCCCAACACACAGCAAGAAAA CAAGTTATTTAAACCGCAGAAAATAGTTCTCGCGAATGAGATGAAAGAAAGTGAAGTAAAAGAAAAATTAAAATTGTTCT CTTAAGATATCAGTTTGTGATGCAGGTATGGGACAGTAATGGGTGGTCTATTGTCTGAAAAGTTCCTTGACACCAACATA AATATTCCTTTTGCTGGTCCCGCAATAAACACTCCTTCCCTCCAGAAGTACAAAAGGGTATGATATCATGAACTGTTGAC CACCATTCTAGTGATAGTTTGAGAAACTTTCATAGAAAGTTTGTATCCCCTCTGGTTTCATTATATTGGAAAACTGGTTT AGGTAAGACAAAAGAGACTGATGGTGGATGCTTAGGAAGGGTGGAGTTTGTTATATTCATTTGACATAGGCTTTGTTATG ACATAAGTTGTTTTGAACTTATTTCCATAAACTGCTCAGATTAACTTCTAAATAAGCGTTTATACCTACTACCTGGTTAT AATCTGTTTTGAGTTCATTTCATTAAGGTTATCAAGTTAGTTTATGAATAAGGGCTCATGCGAGTTAATTGTTATAAGCG CCTAAATAAGTTGTTCACCCAAACTCATCCATAGTTACATTCATGTTTTTTGCTATATTTTGGATGGTGTGGCAGATGGT AGATGCTTGGGGAGGATGGGGTTTGTTCCAGGGACTACTTCGGACTCTTAAACAAGTAGCTACTAAACATGGTGTTTCGA TCTCAACTGTTGCTGTGAAGTATGTGCTAGATCAGGTGAAGTTGATTTCTACTCACTTACAAAAATTTGCTATTCTAATG GATTAAAATCTCATATTACATTGGACAAGCCCTGGTGGATATTCCTTTTATTTTGGTTCTGGTCAAACTTGCAGTCTGCA GTAGCAGGATCTATGGTTGGTGTAAGACTGGGCTTGTCGGACCATATTCGAGACACGAATGCTATCTTTTCACTTGTTCT TGATGAAGAGGATGTGAACAGCATAAAAGAAGCTGCAGGGAAAGGAAAGGATCTGCTTAAAGTGATTGGTGACTGTGGAG ATGAGTATAGGCGTGCATGA
CDS sequence (LotjaGi3g1v0174900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCTGCTGAAGATCTGTATGGGATTTTCATCAATCGAGTTCGTCGTGAGCGTCCACCAGAGTTATTGGAACAGTCT CACTAAGTGGGTGCCACCCCCAGTTAAGATGACAAGTAGCTATGTAAGAGACAGCATTAATGTTTCAAGGAAGAGAATGG ATGTGGATTCCTTGGACATGCTTCAGTTCCATTGGTGGGATTATTCAAATACAGGTTACATTGATGCACTTAAACACCTT ACAGACTTAAAAAACGAAGGTAAAATCAAGACTGTGGCTCTAACAAACTTTGATACAGAGAGACTACAAATCATTCTTGA AAATGAGATTCCTGTTGTAAGCAATCAGGTACAACATTCAATTGTTGACATGCGTCCCCAACAGAGAATGGCAGAGCTTT GTCAGCTTACAGGAGTCAAACTTATAACGTATGGGACAGTAATGGGTGGTCTATTGTCTGAAAAGTTCCTTGACACCAAC ATAAATATTCCTTTTGCTGGTCCCGCAATAAACACTCCTTCCCTCCAGAAGTACAAAAGGATGGTAGATGCTTGGGGAGG ATGGGGTTTGTTCCAGGGACTACTTCGGACTCTTAAACAAGTAGCTACTAAACATGGTGTTTCGATCTCAACTGTTGCTG TGAAGTATGTGCTAGATCAGTCTGCAGTAGCAGGATCTATGGTTGGTGTAAGACTGGGCTTGTCGGACCATATTCGAGAC ACGAATGCTATCTTTTCACTTGTTCTTGATGAAGAGGATGTGAACAGCATAAAAGAAGCTGCAGGGAAAGGAAAGGATCT GCTTAAAGTGATTGGTGACTGTGGAGATGAGTATAGGCGTGCATGA
Protein sequence (LotjaGi3g1v0174900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLKICMGFSSIEFVVSVHQSYWNSLTKWVPPPVKMTSSYVRDSINVSRKRMDVDSLDMLQFHWWDYSNTGYIDALKHL TDLKNEGKIKTVALTNFDTERLQIILENEIPVVSNQVQHSIVDMRPQQRMAELCQLTGVKLITYGTVMGGLLSEKFLDTN INIPFAGPAINTPSLQKYKRMVDAWGGWGLFQGLLRTLKQVATKHGVSISTVAVKYVLDQSAVAGSMVGVRLGLSDHIRD TNAIFSLVLDEEDVNSIKEAAGKGKDLLKVIGDCGDEYRRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 14 | 268 | 255 | 1.8E-42 | ||
| PANTHER | 26 | 281 | 256 | 1.3E-142 | – | |
| PANTHER | 26 | 281 | 256 | 1.3E-142 | – | |
| CDD | 28 | 260 | 233 | 4.69727E-44 | ||
| Pfam | 28 | 260 | 233 | 6.1E-45 | ||
| SUPERFAMILY | 28 | 260 | 233 | 1.83E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0174900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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