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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0179000 |
| Transcript ID | LotjaGi3g1v0179000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier protein; TAIR: AT5G46800.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q93XM7|MCAT_ARATH Mitochondrial carnitine/acylcarnitine carrier-like protein; TrEMBL-Plants: tr|I3T4H4|I3T4H4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0179000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24936967..24939100) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGACGTGGCTAAGGACCTCGCAGCTGGGACTGTTGGAGGGGCATCACAATTGATAGTTGGACACCCCTTTGACAC CATCAAGGTCAAGCTCCAAAGCCAGCCTACACTACTCCCCGGTCAGCCTCCCAAGTTTTCTGGTGCATTTGATGCCGTCA AGCAGACAATAGCAGCTGAAGGTCCGAGGGGTTTATTCAAAGGTATGGGTGCCCCGCTTGCTACGGTAGCAACCTTCAAT GCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACAACAGTGAGGTCCCATCCTGGTGCTCCCCTCACAGTCAGTCAGCA GTTTATTTGTGGAGCTGGAGCTGGAGTTGCTGTTTCCTTTCTTCGTTGCCCAACTGAATTAATCAAATGCAGGTCTGTTG GTGATTTTCTTGTCATGGCAGTTTTTAATCTCATTTTCTTCCACTTCTTTCTATCAGCTTCTATAGATTTTGAAGAGGAC ATTGTGGGCACCAAGGTAGTCAACATCGGGATCCCACGTAGGATCGAGAGTGGGGATAAGAGATCGAAGATCGGAGGATC GGGATCTGGATCGTAAGATCCTAAAAAAAACGCAAATATTTATTTAATAAAATACACATATACAAAAAGTTACATATAGA ACAAAAATTATTCATGATCAACCATAAGAAACACAAATTCTTATGTTTCTTAAAATATGAGTAAAGACATAATGATATAT CCACATAAGTTAATTAAAATAACATAATAGTATAAGACATATCCAAAACATTACTCTTGATTCACCATAAGAAATTTAGA ACACGGGTGGGTAAATGATTATTGACTATTTCTAATTTAAAGTAGAACTAAGGTTTGGAATGAGTGGGTAAATGAGTATT GACTACTGGGTAAATTAGTGGGCCAAACCAGAAAATATAAAAAATAAACACAATTAAAATCTGATCCATTAAAAGTAGGA TCGGATCGAGATCCGAAGATCCTACTTCAAAGATCTCAATCCTAATACGATCCACTAGATTTACGATCCTGATCACGATC CAGATCAAAATTGCCCTTGCAGATCGTAGGATCTTACGATCTTACGATCCAGATCCCGATCCTTACTACCTTGGTGGGCA CATGAAACTTGAAGGACAAGGACCAAGAAGGCCAAAGAAGCATTGAAGGTGATATAAAAGACCGGTCCTTGCCCTTCGAT GTTCATGTACTCCCCTATGTCCTCATACGATTGGGGCTCCTTTATAAAATGTCATGGATTCAGACTTCTATGAAAAACAA CAAATTATTCAACTAGCATGTAAATAATTGCTTCCAATACATTTGTTTTTGTTCATTTCCCTACAAAGCATCTCTTGTCT AGGTTTAACAAACAAAATTCTTTCTCTCACTAATAACATAAACCACACTGCCATGAGAATAAGCTGAATGAATTCCTTCT GCAGATTAGTCTTGATGACATAGAGCAACTTCGGGTGCAGACTAAAGAGCACTTGTTAAAGTTTATTCTGTGCATTTTTT AGTAGATAGGCTCTAATAAGTGTTCTTTAGCCTGTATCTAAACAGGATCATATCTGTTACTCAAAATATGTGTTGATCTT AATATTTTTTCCATGATGAATATCATCATCAGGTTGCAAGCACAAAGTGCACTTGGTGGCTCCGGAGCAGCTGATGGGGC TGTTAAGTACGGAGGATCCATGGATGTGGCCAGGCAGGTTCTCCGGTCAGAGGGAGGCACAAAAGGTCTTTTCAAGGGCT TGGTTCCCACCATGGCACGTGAGATACCTGGAAATGCTATCATGTTTGGTGTATATGAAGCAATAAATCAATGGATTGCA GGAGGCACTGATACTTCTGGACTAGGTAGAGGTTCTCTGATTGTTGCAGGAGGCTTGGCTGGAGCTTCCTTCTGGTTGCT GGTTTACCCAACTGATGTTGTTAAAAGTGTGATTCAAGTAGATGACTACAAAAACCCAAAGTTTTATGGCTCATTAGATG CTTTCAGAAAGATTCAAGCTACACAGGGGTTCAAAGGCCTTTATAAAGGTTTTGGTCCTGCAATGGCCCGAAGTATTCCT GCAAATGCAATTGTCTTCTTAGCATATGAGATGACAAGATCAGCATTGGGATGA
CDS sequence (LotjaGi3g1v0179000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGACGTGGCTAAGGACCTCGCAGCTGGGACTGTTGGAGGGGCATCACAATTGATAGTTGGACACCCCTTTGACAC CATCAAGGTCAAGCTCCAAAGCCAGCCTACACTACTCCCCGGTCAGCCTCCCAAGTTTTCTGGTGCATTTGATGCCGTCA AGCAGACAATAGCAGCTGAAGGTCCGAGGGGTTTATTCAAAGGTATGGGTGCCCCGCTTGCTACGGTAGCAACCTTCAAT GCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACAACAGTGAGGTCCCATCCTGGTGCTCCCCTCACAGTCAGTCAGCA GTTTATTTGTGGAGCTGGAGCTGGAGTTGCTGTTTCCTTTCTTCGTTGCCCAACTGAATTAATCAAATGCAGGCAGGTTC TCCGGTCAGAGGGAGGCACAAAAGGTCTTTTCAAGGGCTTGGTTCCCACCATGGCACGTGAGATACCTGGAAATGCTATC ATGTTTGGTGTATATGAAGCAATAAATCAATGGATTGCAGGAGGCACTGATACTTCTGGACTAGGTAGAGGTTCTCTGAT TGTTGCAGGAGGCTTGGCTGGAGCTTCCTTCTGGTTGCTGGTTTACCCAACTGATGTTGTTAAAAGTGTGATTCAAGTAG ATGACTACAAAAACCCAAAGTTTTATGGCTCATTAGATGCTTTCAGAAAGATTCAAGCTACACAGGGGTTCAAAGGCCTT TATAAAGGTTTTGGTCCTGCAATGGCCCGAAGTATTCCTGCAAATGCAATTGTCTTCTTAGCATATGAGATGACAAGATC AGCATTGGGATGA
Protein sequence (LotjaGi3g1v0179000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDVAKDLAAGTVGGASQLIVGHPFDTIKVKLQSQPTLLPGQPPKFSGAFDAVKQTIAAEGPRGLFKGMGAPLATVATFN AVLFTVRGQMETTVRSHPGAPLTVSQQFICGAGAGVAVSFLRCPTELIKCRQVLRSEGGTKGLFKGLVPTMAREIPGNAI MFGVYEAINQWIAGGTDTSGLGRGSLIVAGGLAGASFWLLVYPTDVVKSVIQVDDYKNPKFYGSLDAFRKIQATQGFKGL YKGFGPAMARSIPANAIVFLAYEMTRSALG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 5.8E-154 | – | |
| PANTHER | 1 | 131 | 131 | 5.8E-154 | – | |
| Gene3D | 2 | 134 | 133 | 2.3E-29 | ||
| ProSiteProfiles | 2 | 93 | 92 | 20.496 | ||
| SUPERFAMILY | 3 | 263 | 261 | 1.02E-68 | ||
| Pfam | 4 | 93 | 90 | 4.0E-16 | ||
| ProSiteProfiles | 102 | 171 | 70 | 12.795 | ||
| Pfam | 131 | 172 | 42 | 3.3E-8 | ||
| PANTHER | 131 | 270 | 140 | 5.8E-154 | – | |
| PANTHER | 131 | 270 | 140 | 5.8E-154 | – | |
| Gene3D | 135 | 270 | 136 | 2.7E-38 | ||
| ProSiteProfiles | 181 | 268 | 88 | 23.006 | ||
| Pfam | 187 | 269 | 83 | 3.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0179000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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