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LotjaGi3g1v0182800.1

Overview

Field Value
Gene ID LotjaGi3g1v0182800
Transcript ID LotjaGi3g1v0182800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease H; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A1B5Z9M8|A0A1B5Z9M8_TRISU Uncharacterized protein; Found in the gene: LotjaGi3g1v0182800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:25610122..25615140) extracted from Lotus japonicus Gifu genome v1.2.

AAATATTAGTCTCTAATTGTAAGTCATTTTCATCACTCCTCAATAATCATTGATAGTAGTCAACCTAATTTTTATCTGCG TTCACTCCTCTATTGATCATTCAATTGTCGATCCATTCTGCAAGCCCCCATCATTCTTAGTGGTGCTACACTGCTACCCT TCAAACAATATGGTTAGTTTTTTCTTTTTACTTTTTCTTTCCTTGTTGGTAGAGTTAAATTTTATTGTATTCATAGCGAA TTTCCATATTGTCTGTGCTCGTAACATAAGAAATCTTGAAAAGCTTTACAATTTAATTTTGTAAAGCTTTTTTTCCTAGA AATTTGTATTTCTTTTTCGGGTATATCTAAAAATTGTGTTCTTGGACATAATTAGAGGAATAGAAGTTTCTTGTTGGCTT TAATTTGAACTATTCGTTTTTGTTTTTCTTGCATTTTTTGTTATTCTGAAACTAAAACAATTGTAGAATTAGCAACCTGC AAAGAATCTATGAATATTTGTCTCAGCGTGGGCTGAGTATGACATGATTTCTTAGATAATAATATTGATATATATTGGGT GTTACTAAAAGAAAATGGTAAATGTCTTCCAAAAAAAAAAGGATAAATAATATGTTCGCACATCTTGCAATGAAGGCAGA GTTGCCTTGTGTTCTGGCTGAGGTTATTGCATATTTTATTTTGGTTCTATATAAGTGTGGGGACACATAGAAATTAAATA TGCTGGAACTAGAATTGGGTTCATAGGATATTTTAAACAAAATTTTTTGGAGGTTATTGAGATTGTTCCAGTTGGTTCCA GGTTAATTGATATAGGGGAAGGGGAGGAAGTTTGTGGCTTGTATTAGCTAGTTACTTCAAAGTTGCTCATTTTTATCCCT TTCTTGAGATGGTTTTTCTCAAGTTTAAATTTTGAATAAAATTTCTTTAATTTATTTGAAAAAGAAAAAAGATTATTCTG ACATTTCTAACTTTTCTTTTTGAAGTTACGTTATTTTTAATTAAGCACATGGTTTTATTTTTTTAAATAAATCACATGGT TAAGTTTTTTTTTTTTTTGGTAATTCACATGGTTAAGTTTGACAAAATATATGATTATCAAAATAATTTTTTTCACTTTT TATATATAGTGACTTTTTTTTTACATTTATAATGACTATTTATATTGTTTAATTCTTTTATCACGATAAGAACTTTGTTT ATATTTAACACTTGTTATATTTTTTTGTATTCTTAAATTGTTGAAATTCTTTTTTGATATTTTTATTTCTTATTTCTCTT GAATATGTGTTTAATTTGTTTGTTCTAATATATCTTTCATCTTTACTTTTATGAATAGTTGGTTTCTTGGCCCCGTCCTC ACCCACCCCAGGTGGCCCTTAGGGATGGCAATGGGTCCGAGACCTAGTGGGTACCCGCAAAAAATACCCACGATGGGTAG GGTAAAAACCCGCTATATGAGTATGGGGTTGGGTATGGGTAATTACCCGCAAAATTTAGTGGGTACGGGTGCGGGTAAGG GTACTATGGTACCCACCCCGCCCCATACCCGCACACATTATATACATATATAATATACATATATAATATATATATATATA TTAATAAAACCTATATACGTAAACCTTTCTCTATAAATTTAAACTTTTGTTTAAAAAAAAACAATACCTTTAAAATTTTA TTTAAACTTGTGGAGTGTTGACATTTCAGATTTTATTATAAAAGAAATAAAATATTAGAAACTGGTAAATTAAAAGTATA TCTTAAATTTAAATTTGGTTAGAAACTGAAAATCTTAACTACTATGAGATTATGATAGGAAAAAAATATAAATAAATCTG ACTTTTGGTTGATATAATCATAGCCTAGAAATGAAAACAAAAATAGTTTTAATTGATTAGTAATTACCAAGAAACTTATT GGAAATTACCAACCTAAGATCATACATTTTCAACCTGCCACTAATTCTTTTCAACTTCAGATACAAACCCTATTTCATCA TCATCAGGCCGTTTCTTTCTCATACACTATTTCTTTCTCATACATACGTTATATTATGTTATATTTTGAGTTTAAGGTGT TGAATTTATACTTAATGTATTTGGATGATGTTTTGTATTTTTAATTAATGTGTTTCCATTTTATAATAGCAATCATGTTC TTTTTTATTGAAAAATGCAAATACGGAAAATTATATTTTATTTAAGTAAATTGCGGGTATTGGGTACGGGTACGAGCATA TATGTACCCATAGGGTACGGGGATGGGCACTGAAGTTGTTACCCACACGGGTATGGGGACGGGTACGGGTATGTTTTTAA AATACGGATATGGGGATGGGTACTATAGTACCCTACCCAAACCCTACCCATTGCCATCCCTAGTGGCCCTCAATGTTGAT GGAAGTTCTTATGGGAATCCCGGTCGAGCAGGTTTTGGGGGCCTTATCCGAAATCACGAAGGCAAATGGATGATTGGATA TAGCCGACATATTGACTTTGCTGACAGCCTAGAAGTCGAACTATTGGCTATATTGCATGGATTGAGAGTAGCTTGGGAGA TTGGTGCTGAAGATGTTAGTTGCAGATCAGATTGCACGGAAGCATTATCTATAATCCTGAGTCCAACATATCAATCTCAT AAATATGCTCACATTATCTTTTGTATCAAAGAATTGATCTCAAGGGCTTGGTCTACTTCATTCTTCCACACTTGTCGAGA AAGCAACCAATGTGCCGACTATATGGCAAAGTTAGGTGCAAATACTACGGGAGATTTGATGATTTTTAGCGAGCCTCTGG ATGCTCTTTCTTCACTCCTCTTAAGTGATGCTAAAGGAACTCCATATGTAAGAATGTACTAGTATTTTACAAGTGTCACT TGCTAGATATTTGTAACATGTAAACAAAAATAGTTCCATTTTGATTAATATGTGGAGAATTTTTTATTAACATGTCATTT TCTATCACCCTTCATCAAATGTATTATTTGTAGCATTGTTTGTGGAATTCCGTATACCCAAGGCTTGAGGCAACATTTCA TACCAAATTCTTAGCTTATCATCAATGTTATTTCTTATCAAGTCAATGATAACTTTATTAGTTTCCTCGGCTTGCCCATT AGCTTGTGCATAATAGGGTGAGGAATGCATCAACTTGATCCTGAATTATTGGACAAATTCCAAAATAATGTACTGCTTGT GAAGGTTGCACCTATGAACTATCTGATTTCTTATAAAGCGATCGAATTACATCATGGTGAGTAACATTCTTCATAGGCCG ACCATACCCACTTAGTGATCGAATATGTGGTTACTAGCTCGAAGAAGCTAGTATTATAGTTCAGATTCAGATGAGTATGA TGGTTTACAAAAAAAAAAAGTGATAATAAGAACCTTTTCCCATATAACTATGAAAATCATTTGTATAATTCCAAAAATCT CTGAGAACAGTCACTTATACAAAAAATCATGAATCATAACCTAATTAGATCATGGATAGAGTGATAGCAAAGGCACAGGA ACACATGGGGAATTCCTCCAAACAGTAGAGTGCAATTTGAGCACCTCCTTGGCCCTCTCCTTTGTCTTGAAACTGCTATC AACTTGAAGCACCAAACACAACTTGGACACAGCCCCAACCTGCAACATTTCATGAAGCACTCTAGAATTTGCAGAGTGCT TACAAATTGAGGCCAAAATTCTAACCCCTCTATCACTTGCTGCATGAGAAACCCTCAGAATTTTCTTGGACACAATGGCC ACTCCTGCACCATGTTTCAATAACTCTGCTCTCCCTTCTGCACAACCACAAAGCTGATCCAAAGCTATCAGAACAAGCTC ACAAGCTCTTCTTTCTGGGACATCAAGAAGGATCTCAATGAGAGATGAAACTGCTCCACCTTCAACTGCTTTGATCCTGT TTCTTCCCCATGGACAGAGCTCCACAATGAGCTTCAATGCAGCCTTTGAAGCCTGATTTGAGATCTGATCACGCAGCACT CTCAGTATTTCCTGAAAAAGCTCTGATTTTACACTGATCAATTGGACTGGATCAGCTACCTCAAATGCTGATTTCATCAG CATAGTTGCATAAGCTCGAGATTGGTAGTTCCCAAGCCTCAAAACATGAAACAAAGACTCAATAAATTGAATTCCCTCGT TGTGGATCAGATTCTTCAGATGGGATTCAGAAGGGTTTAGATGAAACAGAACTTCAATAGCTGCTTCACCCCAAACAGGG GAAACAGGGGAATCTTGCTGGATTTGGATGCTCTTCATGGTTGAAGCCAAAAACTCCACTGCTCCTGCAGATTCCAAGCA TTTCTTATTCCTTTCACCATCAGAAGCAATGGAGCGAAGCCTTCTGAGGCATTTGATTTGCTTCTCTGGGAACCTCTTTG CTTCAGAGATGAGTTTGACAATGTGGGTTCTGTCAATGGGAGGCTTTGGAGTTGGAATGCGCTCAACTCCAAATGAGGCA TTGAGGGTGCACCAACCTTGTATCAAACGTCGCAGAGTGTGGTTTGGAGTGAGATCAGTGTCTAAAAGAGATTGTTTTGT AACAGGGCATGTCTTGTTCTTGCATGAAAATAGCCATTTCTCAATGTCTTCTCTGTCGTAGGTTATTCCTGTGCAAACCG TGACAGGGTCCCTCATGAGTTGCAGGGAAATGGGGCAGAGAAAATGGGGAGGAACTTCAATTTCAGCCATCAAAAATCAG ATTTTGATGATGTTCGAATGATTATCTCAGAGGAAGAATGAGAAAGAATATAGGGAATGGAAAAGGCTTTAGTACTAGCT AGCTAGAGAGTTGAATGAGGATGAGAATAGTAGAATACTCAAATTTTGTTCAAAATTGTGTAGCTGTTTGAGGCACATTT AGTAGTGTCATGAGATTTGTGGTGGAGGAGAGTGCAAATTTTTATACAAGTTGTTGTTCTGAACGATAAAGTCAACACAC GGAAATTGAGAGAGTTGAAGATGGTGAATTAATTAGGGCCTTTCAATTCCAACTTCCAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0182800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCACTGAAGTTGTTACCCACACGGGTATGGGGACGGGTACGGGTATGTTTTTAAAATACGGATATGGGGATGGGTA CTATAGTACCCTACCCAAACCCTACCCATTGCCATCCCTAGTGGCCCTCAATGTTGATGGAAGTTCTTATGGGAATCCCG GTCGAGCAGGTTTTGGGGGCCTTATCCGAAATCACGAAGGCAAATGGATGATTGGATATAGCCGACATATTGACTTTGCT GACAGCCTAGAAGTCGAACTATTGGCTATATTGCATGGATTGAGAGTAGCTTGGGAGATTGGTGCTGAAGATGTTAGTTG CAGATCAGATTGCACGGAAGCATTATCTATAATCCTGAGTCCAACATATCAATCTCATAAATATGCTCACATTATCTTTT GTATCAAAGAATTGATCTCAAGGGCTTGGTCTACTTCATTCTTCCACACTTGTCGAGAAAGCAACCAATGTGCCGACTAT ATGGCAAAGTTAGGTGCAAATACTACGGGAGATTTGATGATTTTTAGCGAGCCTCTGGATGCTCTTTCTTCACTCCTCTT AAGTGATGCTAAAGGAACTCCATATGTAAGAATGTACTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0182800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGTEVVTHTGMGTGTGMFLKYGYGDGYYSTLPKPYPLPSLVALNVDGSSYGNPGRAGFGGLIRNHEGKWMIGYSRHIDFA DSLEVELLAILHGLRVAWEIGAEDVSCRSDCTEALSIILSPTYQSHKYAHIIFCIKELISRAWSTSFFHTCRESNQCADY MAKLGANTTGDLMIFSEPLDALSSLLLSDAKGTPYVRMY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50879
37 167 131 12.559
IPR002156
Gene3D
G3DSA:3.30.420.10
40 168 129 4.0E-20
IPR036397
SUPERFAMILY
SSF53098
41 167 127 1.77E-19
IPR012337
CDD
cd06222
43 163 121 3.77026E-44 –
Pfam
PF13456
44 164 121 1.2E-23
IPR002156
PANTHER
PTHR34023:SF2
50 174 125 4.9E-39 –
PANTHER
PTHR34023
50 174 125 4.9E-39 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0182800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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