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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0182800 |
Transcript ID | LotjaGi3g1v0182800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribonuclease H; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3T7V1|I3T7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0182800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25610125..25613156) extracted from Lotus japonicus Gifu genome v1.2.
TATTAGTCTCTAATTGTAAGTCATTTTCATCACTCCTCAATAATCATTGATAGTAGTCAACCTAATTTTTATCTGCGTTC ACTCCTCTATTGATCATTCAATTGTCGATCCATTCTGCAAGCCCCCATCATTCTTAGTGGTGCTACACTGCTACCCTTCA AACAATATGGTTAGTTTTTTCTTTTTACTTTTTCTTTCCTTGTTGGTAGAGTTAAATTTTATTGTATTCATAGCGAATTT CCATATTGTCTGTGCTCGTAACATAAGAAATCTTGAAAAGCTTTACAATTTAATTTTGTAAAGCTTTTTTTCCTAGAAAT TTGTATTTCTTTTTCGGGTATATCTAAAAATTGTGTTCTTGGACATAATTAGAGGAATAGAAGTTTCTTGTTGGCTTTAA TTTGAACTATTCGTTTTTGTTTTTCTTGCATTTTTTGTTATTCTGAAACTAAAACAATTGTAGAATTAGCAACCTGCAAA GAATCTATGAATATTTGTCTCAGCGTGGGCTGAGTATGACATGATTTCTTAGATAATAATATTGATATATATTGGGTGTT ACTAAAAGAAAATGGTAAATGTCTTCCAAAAAAAAAAGGATAAATAATATGTTCGCACATCTTGCAATGAAGGCAGAGTT GCCTTGTGTTCTGGCTGAGGTTATTGCATATTTTATTTTGGTTCTATATAAGTGTGGGGACACATAGAAATTAAATATGC TGGAACTAGAATTGGGTTCATAGGATATTTTAAACAAAATTTTTTGGAGGTTATTGAGATTGTTCCAGTTGGTTCCAGGT TAATTGATATAGGGGAAGGGGAGGAAGTTTGTGGCTTGTATTAGCTAGTTACTTCAAAGTTGCTCATTTTTATCCCTTTC TTGAGATGGTTTTTCTCAAGTTTAAATTTTGAATAAAATTTCTTTAATTTATTTGAAAAAGAAAAAAGATTATTCTGACA TTTCTAACTTTTCTTTTTGAAGTTACGTTATTTTTAATTAAGCACATGGTTTTATTTTTTTAAATAAATCACATGGTTAA GTTTTTTTTTTTTTTGGTAATTCACATGGTTAAGTTTGACAAAATATATGATTATCAAAATAATTTTTTTCACTTTTTAT ATATAGTGACTTTTTTTTTACATTTATAATGACTATTTATATTGTTTAATTCTTTTATCACGATAAGAACTTTGTTTATA TTTAACACTTGTTATATTTTTTTGTATTCTTAAATTGTTGAAATTCTTTTTTGATATTTTTATTTCTTATTTCTCTTGAA TATGTGTTTAATTTGTTTGTTCTAATATATCTTTCATCTTTACTTTTATGAATAGTTGGTTTCTTGGCCCCGTCCTCACC CACCCCAGGTGGCCCTTAGGGATGGCAATGGGTCCGAGACCTAGTGGGTACCCGCAAAAAATACCCACGATGGGTAGGGT AAAAACCCGCTATATGAGTATGGGGTTGGGTATGGGTAATTACCCGCAAAATTTAGTGGGTACGGGTGCGGGTAAGGGTA CTATGGTACCCACCCCGCCCCATACCCGCACACATTATATACATATATAATATACATATATAATATATATATATATATTA ATAAAACCTATATACGTAAACCTTTCTCTATAAATTTAAACTTTTGTTTAAAAAAAAACAATACCTTTAAAATTTTATTT AAACTTGTGGAGTGTTGACATTTCAGATTTTATTATAAAAGAAATAAAATATTAGAAACTGGTAAATTAAAAGTATATCT TAAATTTAAATTTGGTTAGAAACTGAAAATCTTAACTACTATGAGATTATGATAGGAAAAAAATATAAATAAATCTGACT TTTGGTTGATATAATCATAGCCTAGAAATGAAAACAAAAATAGTTTTAATTGATTAGTAATTACCAAGAAACTTATTGGA AATTACCAACCTAAGATCATACATTTTCAACCTGCCACTAATTCTTTTCAACTTCAGATACAAACCCTATTTCATCATCA TCAGGCCGTTTCTTTCTCATACACTATTTCTTTCTCATACATACGTTATATTATGTTATATTTTGAGTTTAAGGTGTTGA ATTTATACTTAATGTATTTGGATGATGTTTTGTATTTTTAATTAATGTGTTTCCATTTTATAATAGCAATCATGTTCTTT TTTATTGAAAAATGCAAATACGGAAAATTATATTTTATTTAAGTAAATTGCGGGTATTGGGTACGGGTACGAGCATATAT GTACCCATAGGGTACGGGGATGGGCACTGAAGTTGTTACCCACACGGGTATGGGGACGGGTACGGGTATGTTTTTAAAAT ACGGATATGGGGATGGGTACTATAGTACCCTACCCAAACCCTACCCATTGCCATCCCTAGTGGCCCTCAATGTTGATGGA AGTTCTTATGGGAATCCCGGTCGAGCAGGTTTTGGGGGCCTTATCCGAAATCACGAAGGCAAATGGATGATTGGATATAG CCGACATATTGACTTTGCTGACAGCCTAGAAGTCGAACTATTGGCTATATTGCATGGATTGAGAGTAGCTTGGGAGATTG GTGCTGAAGATGTTAGTTGCAGATCAGATTGCACGGAAGCATTATCTATAATCCTGAGTCCAACATATCAATCTCATAAA TATGCTCACATTATCTTTTGTATCAAAGAATTGATCTCAAGGGCTTGGTCTACTTCATTCTTCCACACTTGTCGAGAAAG CAACCAATGTGCCGACTATATGGCAAAGTTAGGTGCAAATACTACGGGAGATTTGATGATTTTTAGCGAGCCTCTGGATG CTCTTTCTTCACTCCTCTTAAGTGATGCTAAAGGAACTCCATATGTAAGAATGTACTAGTATTTTACAAGTGTCACTTGC TAGATATTTGTAACATGTAAACAAAAATAGTTCCATTTTGATTAATATGTGGAGAATTTTTTATTAACATGTCATTTTCT ATCACCCTTCATCAAATGTATTATTTGTAGCATTGTTTGTGGAATTCCGTATACCCAAGGCTTGAGGCAACA
CDS sequence (LotjaGi3g1v0182800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGATATAGCCGACATATTGACTTTGCTGACAGCCTAGAAGTCGAACTATTGGCTATATTGCATGGATTGAGAGT AGCTTGGGAGATTGGTGCTGAAGATGTTAGTTGCAGATCAGATTGCACGGAAGCATTATCTATAATCCTGAGTCCAACAT ATCAATCTCATAAATATGCTCACATTATCTTTTGTATCAAAGAATTGATCTCAAGGGCTTGGTCTACTTCATTCTTCCAC ACTTGTCGAGAAAGCAACCAATGTGCCGACTATATGGCAAAGTTAGGTGCAAATACTACGGGAGATTTGATGATTTTTAG CGAGCCTCTGGATGCTCTTTCTTCACTCCTCTTAAGTGATGCTAAAGGAACTCCATATGTAAGAATGTACTAG
Protein sequence (LotjaGi3g1v0182800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGYSRHIDFADSLEVELLAILHGLRVAWEIGAEDVSCRSDCTEALSIILSPTYQSHKYAHIIFCIKELISRAWSTSFFH TCRESNQCADYMAKLGANTTGDLMIFSEPLDALSSLLLSDAKGTPYVRMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 105 | 105 | 6.0E-31 | – | |
PANTHER | 1 | 105 | 105 | 6.0E-31 | – | |
ProSiteProfiles | 1 | 98 | 98 | 8.636 | ||
Gene3D | 2 | 102 | 101 | 2.0E-10 | ||
CDD | 3 | 94 | 92 | 1.69335E-27 | – | |
SUPERFAMILY | 4 | 98 | 95 | 6.07E-10 | ||
Pfam | 9 | 95 | 87 | 2.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi3g1v0182800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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