Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0188700 |
| Transcript ID | LotjaGi3g1v0188700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin d3; TAIR: AT5G67260.1 CYCLIN D3;2; Swiss-Prot: sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2; TrEMBL-Plants: tr|I3SZW4|I3SZW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0188700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27022087..27026424) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATCTGCAAGGGCCGGGTCAAGGGTCGGGTCTTGGAGCGGTTTTTCCGTGCCCTATGCAGAGATCCGAGACGTACC TCCAAGGTAGGCAGCATCTTCCCTGCAGATTGCTGCAATCTTCCCCTCTTCCCCATTTGCCCCCCTCCTCCACGGATTTC GTATCTCCCCCTCTCCTCAATTATTTTGTTGATAAATGAAATTGTTGGATCTGTTTCTTTACATATTGTCGGCGGGGAAG GTTGTCGGTTGAGAGACCTTCTTCTTTCCACGGCCACAACGCCGTAGCTCCGACTCCGCTCCGCCGTCCGAAGACTGTTC CTGATCTTCTGTCATACTGGAACCACGCCGGAGGGTCTGCCGAGACAGCCACCGAAGCTGCTCCTGAAGGTGACGGTTCT TGGAAGCCTCGGGCCTGTGCAGGTTCTCATGAGGCCGGAATCTACCGTCGGCGAGCTGGTGGTGGCGCGGCAGTACGTGA AGGAAGCTTGCCGTCCAACGATGCCTCTGATTTCGACCTTCATTACTCGCAGTTTAGCCTAGAAAGTGAGGTTCCTGTTT CCCTTCACAATCTCTTGATCTTCATATGAAATCATGAATATAAATTCTGATGATCGTGAAATTGATCTGGTTGTTTTGTT TATCTATGAAGGTTTGCATAGGGAGGAGAAACTGGTAGAACTTGGGTCTAGGAACTTTTTCATGATGCTAAGATGCAGCT TTTGTTTATTTTTTTAGGTGCAAGATGCTAAGTTTGTGTTTGAGGCAAAGACTATTCTGAAAATGGAGCTTCTGGTTCTG TCCACACTCAAATGGAAGATGTATCCTGTGACTCCACTTTCATTTCTGGATCACATTATCAAAAGGCTTGGATTGAAAAC CCACCTTCACTGGGAGTTTCTCAGGCGTTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGGTAAAAACTTCAACTTTTTGA GATTTATAGCATTCTTAAATATTAAAACTTTAACTTTTTCGATCTGTTCAAAGAATCAACAAAGACAAGGTCTTGATTTT GTTACCATTTGCTATGTGTGTTTTTGTTGAGCCTAGATTCAAGATTTGTTGGTGTTCTTCCTTCTGTGTTGGCCACTGCA ACAATGCTGCATGTTATAGACCAGATTGAGAAGAGTGATGAGGTGGAATACAAAAAGCAGCTTCTGGGTGTTCTCAAAAT TAACAAGGTTAGTAGTAATGTTTGGATGTTCATGTGTTTGTTTAAGGAATATTTGTTTATTTAATACACATGAGTAGCAC ATTATTTGATTTAGTTAAGCATCTTAGATTAAATGTACATGAGTAGCATATCATTTGATTTAGCTAAGCAACTTAGATTA AATGCACATCATTAGCATATCATTTGATCTTAGTTAAGCATCTTAGATTAAACAATCACAAATTAAATGCAGATGATTAT TAGCACATGATTTGATTTGATCTTAATTAGTTAGGCCTCTGCATTTTGACAGGGGAAAGTAGATGAATGCTATGATGCCA TGCTTGAGCTTACTAATGCCAATGATTATGATGATAACAAGAAGGTTAATAAGCGCAAGTATGAGGAAATAATCCCTGGT AGCCCAAGTGGCGTCATTGATGCTGCTTTTAACTTTGATGGTTCTAACGATTCGTGGACAGTGGGGTCATCATTGTTTTC ATGTGCCCAAGGAAAAACATGCCGCTACCACCACCCCTGCCGCTGAAGGTGGTGGCGTGACGACGGCGTTTGCGTCAAAT TGCTTTGAGGAAGGGGCGCTTTGATGGAGCGGCGGAATGAGAGGGAAAGCTCGCAAGGTAGGTTCTTTTCAGCCGTTTTT CTTCAATGTTCTGTAGCTGATTCTCTGTTCTTTCACAGGTTACAATTAGTTCTCACAATGTTTCATTCTAATTAAGATTG TGCACACAACATGTTCGATAGTTTGCTTTGCTGAAATTCAATTTGTCAACTGTGTTTTTTGTTTCCTTTCAGGGATCAGG AGATGAGGAGATGTCAAAGTTGCTTCATTCTCAGAAAAAGAAAATGAGACAAAAACAAAGAAAGACAGAAGTAAGAGCTA AGACTATATTGTACTAATTTCTATAGCTTCGTTTGAACTTGGTGCATGAAGGGTACTCATTCAGCCTATTGTTTTATTTT GTTTCACAAATTCAGTTGTATACTAAATATGTTTCAATTTATCATATAGCAGTATTGATTTCATTAAAGGTCTGATTTGT TTTCCTGTTTATGCCAACATATTGGTCTTTTTTGTTTTATTTTTCAAATCTTGCATTAACATAATATTTTATCTGATTTG TTTTCAGATCTTCTTTTTCTTCATGTTCAGTCTCTTGAACAATAATTTATTACATTTACAAAGTTGCTCATTGAATTTTC ATGCATCTTTATTTTTCCTTTTTACAAGAATCACTTATGCCAGTCAATCTTTTGGACCTGCAGATCTGATTCTTGCTTTG TCCTGGAAATGTGTCCGAGAGGTTCTTTTCATGAATCAACTTTGGCTTCCAGTGACGTGGAATTTCATAGTCCAACATTA AAAAATATCATGGAAACTGACAATGAAGTATTTCAAGAATCAAAACAGTGGGAGCAAGAAAGTAGATATATCTCACAAAA ACAAATGGAGTCTCTTGCTGGTGTTATGGATGAGGAGGTGATTGACATCATAACAATGGAGGATGTTATGGAGGAACTAT TACAGGTTATCATTGTGTTTTATGCTATATCTACAATTTTCTTAATTAAAAAAGTAAATGTTGATAATCTGATAATACTT TATTCTCACTCTTGACTATGGGATATGGGATCAGATATTCTTCTTTCTTTTGTTCACAATGCACTTTGTTCCGTTTAGGA AGAAAAAGTAAAAAAGAAAGTGGGTTAAGATGACTTCTATTGAAAATTTGTTCTCATGGTAGTCATAAATGTTCACATAC TGCCTACTGCCACAAAGCTTTTAAAGGAGTTCATAAAAAGACTGTCACATGAGACAAATTGTCTATATTTCAGGTGGGTT TTGATAAACACAAGAATGGTATTTTCTATTTTGAGCCAAGCTTCGGTGTTTTTTAAATTATGTGTGGTATTGACTTTCTG ATCTTTGGTTTTCAAGTTCTTGATTGCCTTTTTAAATGAGATGTATTTAATTTAATCTATTTGCAACATAATAAGAATGA GAATAAATTTCTTTGTGGCTTACACTTGTGATTCACGACATAAGATTCGAGAAGGAAAGGGTGCAATGTGACTACACTAG CTCATGGTCCATTCTTTTCCTTCCAAATCCCAATTAATAAACAAGTTATTTTTTTCTTTTCCATTTGGTAATGGTTTCAA TGGACTGAATGGAGGTTGTTACTGATACTGTTAAATTAACTTGGTGGGATAATCCATATGTACCACACACTCATATAGGA CTCTTAAAGTGAAAATATCATCACTTTATTTCATATGGTGTTGGGATACTACTTCTGATGTCTCTTTGTCAATCATATGG TGTCACACATGGATGTACTTGCGCATCAAAAACACATTCATTGATATGCTTTTGATGGGTCTTCCTTTTTCTCCTTTCCT CCTTATTGCACCAAGGCTAATTTGTTGAATTGGCAAACATATTGAAGATTGTCGCATTCCTTCTCTGCATTTTGGACCCA TAAAAAAATGTTCTTTCTTATTTTATTATTTTCTTGCAGAGCCAAGCTGATTCAAACCGAGTGATTTGAACATTGTGAGC AAATGTGCTGGCTCCTTTTATAATTATTGTATTTCTTTTGGTTATTGTATTTCTATTTCAAATGATAGAAGGCTTGATTC TATGAACTTGGGGTTGCAGCCAAGCTAGGTCTCTCCCTATAGAGAATAGATGTTTTTGAACTATGATAACTCCAATTTAA TTTATTAAATGAAATCAATTTAATTCTATGAACTTGGGGTTGCACACCGCCCTACCTTGATTAACATGGTGTTGCCAACC GGCTATGTTACTGAGTGGTTTTTGAATTGAGACGAAACGAGCTTCCCTAAATGCATGATAGGCATCGAGTGGTATGAGTA TTGCAGGGTAAACAGGTTCAATTTCACCGATCAGTTGAGATTTTTCAAGCTGAAACCGCCTGATACTTTTCAGTTGTAGT TGTTCGAAACCCTTGAGTGTGTGGCGGTTTAATAGTTTCAATTGAAGTATGTAATAACTTTGGTTCTATGTTTCTTAGCG TATTGTATGTGTTGATGGTTCCTGTTTGTGTACTTAATTTTGACATTGTGAAAAAATAATTAATATGAATATATCAGTAT TTGGGATTTGATAAATGG
CDS sequence (LotjaGi3g1v0188700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTCTGGTTCTGTCCACACTCAAATGGAAGATGTATCCTGTGACTCCACTTTCATTTCTGGATCACATTATCAA AAGGCTTGGATTGAAAACCCACCTTCACTGGGAGTTTCTCAGGCGTTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGATT CAAGATTTGTTGGTGTTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAGAAGAGTGAT GAGGTGGAATACAAAAAGCAGCTTCTGGGTGTTCTCAAAATTAACAAGGGGAAAGTAGATGAATGCTATGATGCCATGCT TGAGCTTACTAATGCCAATGATTATGATGATAACAAGAAGGTTAATAAGCGCAAGTATGAGGAAATAATCCCTGGTAGCC CAAGTGGCGTCATTGATGCTGCTTTTAACTTTGATGGTTCTAACGATTCGTGGACAGTGGGGTCATCATTGTTTTCATGT GCCCAAGGAAAAACATGCCGCTACCACCACCCCTGCCGCTGA
Protein sequence (LotjaGi3g1v0188700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLVLSTLKWKMYPVTPLSFLDHIIKRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGVLPSVLATATMLHVIDQIEKSD EVEYKKQLLGVLKINKGKVDECYDAMLELTNANDYDDNKKVNKRKYEEIIPGSPSGVIDAAFNFDGSNDSWTVGSSLFSC AQGKTCRYHHPCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 1.8E-48 | – | |
| Gene3D | 1 | 111 | 111 | 2.0E-21 | – | |
| PANTHER | 1 | 138 | 138 | 1.8E-48 | ||
| Pfam | 16 | 127 | 112 | 1.7E-20 | ||
| SMART | 16 | 135 | 120 | 4.7E-13 | ||
| SUPERFAMILY | 17 | 127 | 111 | 1.59E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0188700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…