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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0193500 |
| Transcript ID | LotjaGi3g1v0193500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-3b; TAIR: AT2G38250.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b; TrEMBL-Plants: tr|K7KD37|K7KD37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0193500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28023838..28025714) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAATCTCTCCTTTTCCTCTTGGGGCCATTCACATCAGCTTCATCATCCTCTTAACCGTGTTCACACCACCCACATAT ATATAACCTTTCTTTTACTTTCTCGTCATTTCTTTCTCCTCCATAACCCCCCAAACAAAACCCATCTTTTTCCTCGTAAT CTTCTAACAACTCCTTCTAGAAAACTTGAAGAAGGGTCAGATTTGATTCGTTCAATTTGAATGGAGGGTCATCACCATCT ACATCTGCAGCAGCAGCAGCAGCATCTTCTTCCTCATCAGAACATCATCACTAACGTGGATGTGACTGATAGGTTCCCTC AATGGAGCATCGCAGAGACCAAGGAGTTCCTGGTGATGAGAGCAGAGCTGGATCAGGCTTTCATGGAGACTAAAAGGAAC AAGCAGTTGTGGGATGTTATTTCCACCAACATGAAGGAAAAGGGTTACCATAGAAGTGCAGATCAATGCAAGTGCAAGTG GAAAAACCTTGTAACCCGCTACAAGGTATTTATCTCTATTCATCTTTTCATAAACCTGATTTCTTATTAAGTAGTTGAGA GGATCCTGAAGTAATTGAGAAAAATTTGGTTCATAAACTAAAATGCGTTTTCTGAAAATTAATTTATTTCAATACAAAAA GCATATTATAAATATATTACATATTAAATATAATTAGTTTTAAAAATATGATTCGTAACTACTAACTAGTTTTTAAAATT GTCCACCATAGAATTATCTTCAAGTTTTGTCTACCGATGATAAAAAAAAATAGTTCAAAAGTTTTTAACATGATGCACAT TAATATATACTAGTTGTAGTTAGTATTTTAAGCTTGATAGTTCATAACTTTCCTTAGATAATGAATAGAAACTTTTTTTT TAATTAATTATTTGAGATGTGAAGGGATGTGAAACAATGGAGCAAGAAGCAGGGAGACAGCAATTCCCATTTTACAATGA GCTCCAAGCAACATTCAATGCAAGGATGCAGAGAATGATGTGGGCGGAAGCTGAAGCTGCAGGTTCAAAGAAGAAGGCTG TGGAGCTCTCATCGGATGACGAAGACGATGTTAATGAAGAGAGTGCTGAAGCAGACCACCAGAAGGCCGGTAACCGAAGA AAGAAGAAGAAGGCTAAGGTGGCTTGTGGAAGTGGTGGTTTGAACAATTTGAAGGAGATTCTGGAGGAGTTCATGAGACA ACAGATGCAGATAGAAGCGCAGTGGATGGAAGCGTTCGAGTCGAGGGAGAACGAGAGGAGATTGAAGGAGATGGAGTGGA GGCAGCAAATGGAAGTCTTGAAGAATCAGAGGATAATGATGGACCAAAGATGGAGAGAAAGGGAGGAGCAAAGGAGGATT AGAGAAGAAGCTAGAGCTGAGAAGAGGGATGCTCTAATCACAGCTCTTCTAAACAAGCTAGAAAGGGAAGAAATGTAGAC TTAAGGTTATATATATATGGTCATAGTAGAGGTTACATCACATATATTGTTTGAAATTATGGAAATTACAAAGTAAATGT GACTGAAACAGCTAGAATTAGGATTGCAACATGGTTGCTGACTTTTCTAAAATCTTTGTGATGTATTGTGGATGCAATTG TGATTGTGTTGACTGTAATATTTTAAGGCCTTACATGTAGTGAAGGTAACTTGCTACTTTTTTTGGCGTACGTTTCTTAT TCTCATATGAAAGGAATTTTAAATTTCTAGAGGTTTTTATACTTGGAATGCTCAACTTCTTGTAGAAAATCAATTTCATG CTTCTTGTGATTTTGTCAAGTTGTGTTCAACTATCTATTCATATTACTTTGCCCACTTGGGGGTTTCTTTAGTCGATATG CAAAATAACATTGTCCATAGGAAGTAATCATGTTTGG
CDS sequence (LotjaGi3g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTCATCACCATCTACATCTGCAGCAGCAGCAGCAGCATCTTCTTCCTCATCAGAACATCATCACTAACGTGGA TGTGACTGATAGGTTCCCTCAATGGAGCATCGCAGAGACCAAGGAGTTCCTGGTGATGAGAGCAGAGCTGGATCAGGCTT TCATGGAGACTAAAAGGAACAAGCAGTTGTGGGATGTTATTTCCACCAACATGAAGGAAAAGGGTTACCATAGAAGTGCA GATCAATGCAAGTGCAAGTGGAAAAACCTTGTAACCCGCTACAAGGGATGTGAAACAATGGAGCAAGAAGCAGGGAGACA GCAATTCCCATTTTACAATGAGCTCCAAGCAACATTCAATGCAAGGATGCAGAGAATGATGTGGGCGGAAGCTGAAGCTG CAGGTTCAAAGAAGAAGGCTGTGGAGCTCTCATCGGATGACGAAGACGATGTTAATGAAGAGAGTGCTGAAGCAGACCAC CAGAAGGCCGGTAACCGAAGAAAGAAGAAGAAGGCTAAGGTGGCTTGTGGAAGTGGTGGTTTGAACAATTTGAAGGAGAT TCTGGAGGAGTTCATGAGACAACAGATGCAGATAGAAGCGCAGTGGATGGAAGCGTTCGAGTCGAGGGAGAACGAGAGGA GATTGAAGGAGATGGAGTGGAGGCAGCAAATGGAAGTCTTGAAGAATCAGAGGATAATGATGGACCAAAGATGGAGAGAA AGGGAGGAGCAAAGGAGGATTAGAGAAGAAGCTAGAGCTGAGAAGAGGGATGCTCTAATCACAGCTCTTCTAAACAAGCT AGAAAGGGAAGAAATGTAG
Protein sequence (LotjaGi3g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGHHHLHLQQQQQHLLPHQNIITNVDVTDRFPQWSIAETKEFLVMRAELDQAFMETKRNKQLWDVISTNMKEKGYHRSA DQCKCKWKNLVTRYKGCETMEQEAGRQQFPFYNELQATFNARMQRMMWAEAEAAGSKKKAVELSSDDEDDVNEESAEADH QKAGNRRKKKKAKVACGSGGLNNLKEILEEFMRQQMQIEAQWMEAFESRENERRLKEMEWRQQMEVLKNQRIMMDQRWRE REEQRRIREEARAEKRDALITALLNKLEREEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 271 | 271 | 1.9E-115 | – | |
| PANTHER | 1 | 271 | 271 | 1.9E-115 | ||
| CDD | 33 | 98 | 66 | 8.50777E-22 | – | |
| Pfam | 34 | 117 | 84 | 1.7E-19 | – | |
| Gene3D | 35 | 96 | 62 | 1.7E-19 | – | |
| ProSiteProfiles | 35 | 91 | 57 | 6.922 | ||
| MobiDBLite | 137 | 170 | 34 | - | – | |
| Coils | 181 | 201 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0193500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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